AMCG00020419


Basic Information

Item Value
gene id AMCG00020419
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18395857 ~ 18398731 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020419
CGCCTCACTCCGCCGCTTCCTGTGGAGCTGCCTGAACCCAATCGAAAAggatttgttcatttttgcaCCTGAGGGCCACCGTACAAGCGTCTGCATGATGGATCCGAGCTCCACGGTGTTGCGGGTGAAGCGGAAGCGCGGTACAGATCCTGCAGATGCCCTTTTGCTGGCTTGTAAACGGCTGAGACCTGAATCCACGTCCACCCAGGTCGCGCAGGATTGCGTCTCCGAGTCCGCTGATGGCGAGATTCACAACTCCGTCTTCAAACTCGCAGCTACTGTCCCATCTAAGGATGCTCCAGTGCAGACGCACCTCCGGGAGGCGTTGTCCCGCCAGCGTGCCGTGCAGGCCCTGCGGCCAACTGCCGGCAGTGCCCAGAGGATTGTGGGAGACCTGCGCAGCGCCAAATGGAGGAGCAGGCGGGAGGAGCGGTACCGTGTGCTGTCCAGCCACCGGCCCAGCATTGCCAGGGACACTGTGGCCTCCACGGGCACAGTGGCTACAGATGCCGACCCTACAGACCCTGCTGCTCTGACGGTGCTCCCTGACATCCAGTCTGTGGCCTCTGATCCGGAGACGATCCTCTGTAACTCGGTGAAGCTGATCCGGGAGAAGCTGAGTGTGTCAGAGGGGGGTGTGGGCTCGGGGCACCGCGAGAGAGAGGAAGAATACGTCTACGATCTTTACTTCCAAGAGACGGCCGCGCCTGGCTGGATCCAGGACATTCTGTCTGTAAAACCTTACATGCAGGAGAGCGAGCTGGTGGCAGAAGAGAATCCCAGGGAGGAAGAGGTGTACGAGGATGAAGATGATGAAAACGAGGAAGGCAACTGGAGGAATGATTATCCTGATGAAGAGGACAGCGAGGAGGACTATGAGAGGGAGCAGCGATGCACAGGGTTTGGTAATGGCAGTgaggaggaagatgaggagGACACTGGCATGGGGAGGAGATCCTGGGAGCGATACCGACGGGACCTGCTGAAGGAGATAGAGAACAAGGATGAGATGAAGGAATTGGATTCTGACTAAAAGATCGACTGGACGTGGAGATTACCTAGGATGTTACTGTATTGTGAGTTGGGGGGGGAACCAGGCTCTGATTTCCCCCAAAGTATAAAGAGCAATGACCTGTACTTCTCGAGGGATGCAAGTTTAGTGACGATATTTCACCTGCCAAGTCTATGGGATTAAAGATTGTGCAGGCCTCAACAGACCACAATTGCAACACCATCCTTGTGTAAAAACATGAGTGGTGCAGTTGAGTAGCGCGGACAAGAAAGCATTTTGTGGTGAGGCTAGAACGGACTAATTAAGTGTATATatgtagatttgtatttatgaataaaGCTATTCTTTGGTAATAAA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04218 Cellular senescence

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020419 True 1369 mRNA 0.54 5 18395857 18398731

Neighbor

gene id symbol gene type direction distance location
AMCG00020420 NA coding upstream 5946 18382143 ~ 18389911 (+)
AMCG00020415 NA coding upstream 37012 18338437 ~ 18358845 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding upstream 200227 18187199 ~ 18195630 (+)
AMCG00020412 LOC107707912 coding upstream 209809 18182076 ~ 18186048 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding upstream 217737 18138887 ~ 18178120 (+)
AMCG00020425 ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291 coding downstream 111732 18510463 ~ 18522856 (+)
AMCG00020426 ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670 coding downstream 131447 18530178 ~ 18536093 (+)
AMCG00020427 LOC106562068,LOC107585958,LOC106903279,LOC106941941 coding downstream 211038 18609769 ~ 18617672 (+)
AMCG00020428 vac14 coding downstream 227237 18625968 ~ 18668640 (+)
AMCG00020430 NA coding downstream 273171 18671902 ~ 18680796 (+)
G63069 NA non-coding upstream 1551 18394101 ~ 18394306 (+)
G63068 NA non-coding upstream 2551 18393066 ~ 18393306 (+)
G63058 NA non-coding upstream 35364 18360275 ~ 18360493 (+)
G62994 NA non-coding upstream 184828 18210769 ~ 18211029 (+)
G62993 NA non-coding upstream 185480 18210138 ~ 18210377 (+)
G63097 NA non-coding downstream 39471 18438202 ~ 18440919 (+)
G63203 LOC101154678 non-coding downstream 884227 19282958 ~ 19283173 (+)
G63208 NA non-coding downstream 927864 19326595 ~ 19329495 (+)
G63209 NA non-coding downstream 963141 19361872 ~ 19363484 (+)
G63248 NA non-coding downstream 1231543 19630274 ~ 19630567 (+)
G63045 NA other upstream 61825 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 323806 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 330068 18058558 ~ 18065789 (+)
G62895 NA other upstream 466953 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 923988 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1198472 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1232594 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3736637 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3957443 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4655067 23053798 ~ 23062149 (+)

Expression


Co-expression Network