AMCG00020424


Basic Information

Item Value
gene id AMCG00020424
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18398834 ~ 18415770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020424
CTGAGCGCCCGAGTGACGACACGACGAGGTTTGATTTTCTGCCCAGAACACGTGACCGATTTTGAAGCCGCTGTGTTGCCGGCATCACGTGGTCTGTCTGGCAGCTCGCCTCTCTAACCTCAGCGCGCATCCCGGCTCACCGAGACACAGGGTGATGAGCAGCACCGACGGGCTGTAGCTTCGGCTTTCTGCACaagaacagacacagacagACCCAGCTTCCTGGAGGGGACAGCAGGAGGGACAGGTATGAAGAGGGGTCCAGGAGAGAACAGGCTGGCGAATGGCAGCATGGCAGCATCTGGGGAGGACAAACAGGGCAGCCAGGGGGGCCAGGAGACAATGCAGCTGAAGAAGGAAATCTCCCTGCTGAACGGGGTGTGCCTGATCGTGGGCAACATGATCGGCTCAGGGATCTTCATATCCCCCAAGGGCGTGCTGTTCTACAGTGCCTCCTATGGCCTGTCTCTCGTGATCTGGGTCATCGGGGGCATGATCTCCGTTGTGGGTGCGCTGTGCTACGCCGAGCTGGGCACCACCATCCCTAAGTCGGGCGCCAGCTACGCCTATATCCTGGAGTCCTTTGGGGGCTTCAGCGCCTTCATCCGCCTGTGGACCTCCCTGCTCATCATTGAGCCCACCAGCCAAGCTGTCATCGCCATCACCTTCGCCAACTACCTGTGGGGTACCAAAGTGCAGGACATTTTCACCTACGCCAAGGTGCTGGCTCtgatcgtcatcatcatcactggGATTGTCAAGCTGTGTCAGGGTCACACGGCGCACTTCGAGGCGTCTTTCCAGGGCTCATCTTGGAACCCTGGAGACATCGCTCTGGCGCTGTACTCGGCCCTCTTCTCCTATTCCGGCTGGGATACGCTGAACTACCTCACCGAGGAGATCAAGAATCCCCAGAGGAATCTCCCACTGTCCATCGCTATCTCCATGCCAATTGTGACCGTCATCTACATCCTGACCAATGTGGCTTACTACGCTGTGCTGGACATGGGCGCCATCTTGGCCAGTGATGCTGTTGCTGTGACTTTCGCTGATCACACTCTGGGGGTGATGAGCTGGACCATCCCTATTGCGGTGGCTCTGTCCTGCTACGGCGGCCTCAATGCCTCCATCATCGCAGCCTCCAGACTGTTCTTCGTGGGCTCTCGAGAGGGACACCTGCCTGACGCGCTGTCTATGATTCACGTTGAGCGATTTACACCTGTCCCTGCACTGCTCTTCAATTGTGCCATGGCGCTGATATACCTGGCCGTAGAGGACGTCTTCCAGCTCATCAACTACTACAGCTTCAGCTACTGGTTCTTCATGGGGTTGTCAATTCTGAGCCTGCTGTTCCCGATTGTGTTCTGCCTGTGCACTGTGTTCCTGGTGGTAGTGCCCCTGTACAGCGACACCATCAACTCCCTCATCGGCATTGCCATCGCCCTCTCCGGGGTTCCCGTCTACTTCCTGGGCATCCACCTGCCCGAGTCCAAGCGGCCGCCCTGCATCACCAAACTGCTGCGAGCCCTGACCCACATCACTCAGCGCACCTGTTTCTGTGTGCTAACAGAGATGGACCTCAGTGAGTAACCCCCCAAGCCTGTCAGCAGACGTGTAGGACAGCACAACCGCCCACCCACCCTCCTGGACAAACACCGCACTGAGCAGCACCTCGGACTCCTACAGCTCCCACACAGGCTTATAACCTGTTGTCCATCCATGGACTGCACTGCTATTGAAGAGAGCTGTCGACTTGAACTACTGAGAGGGTTTATCTTGATATCTTCATTTCTAGGATACACTACATGCACAAAGGATCCCCCGCCCGTGGTCCACAATGCAGTGCCAACTGTTGAAAAATTTATTTCAGTCTAAGTTTGGACTTTGCAAGCAATTTCCCAGTATTGCTCACCCAGAGAGCTGTGGAAACAGTTCAGTGTTGGGAACTGTTTGCCCTGGAGCTCAGCAGCTCTGCATTCTAAATGACCAATTGTGtcagtagtggtcagggctctggactttaccgagattgctccagtaaaaagcAAGCCGTACAAagagtaaaatatatgtaaaaataatgtgattgtgCAAGGCACCCTACATCTAGGCATctgttaagaaatgtaatttgggaAAATAATGACAAGCAATACTGGGTGCTGGGAAGGCAAACACCACTGCAGCTCTTTCCAACAGAAAAGTGTTTCTTCCGGTTTCTATTCTACAGAAGACATGTCAGTGACACTCCTCCTTACCAACGGTCATTCGTTAAAGCATTTTTCACATGTATTGTCATACATGTGGTATAATCTTGGCACATACACAAAACCTGTGGACTCAGCCCATACCAATCCTGCAGACTGCCCTGCCCATCTCAACGCACTGTTTCACCAGGTTGGCTTAAACTGTACACAGCAAAAAGGAGATTGTGTCCTGCATGTAACTAGtgccttttaaaatgctgaaCTATAAGACAAttcaactttttaattttattttcatatatattattaatcagCCACCACTTAGTGATTTTCACTGAGTTTTTACAACTGATTTGTAAGAATTagctgacattttttttccccttgtaaAATCAAGGGAATGTATATAAAGGGAATATTTTCTATGCACTTTTTCCATACTTAAGGAATTTAATTTTTCCCCCTCCCTTTTCCATTTAATCAGGATTGCCTAAACAAGACACTCTGCATAAGGGAGTGGCTTAGTTGcaccttgtttttctcttctattCAAAGGATCCTTAGAAAAGTGGTGTGGAAAACAACTGGAACTTTGCGAGTATGTGGGGGGGCAGCGATCCCCCAGGAAGATGGCTCATTTCCTTTTGTCTTCCTAGCTGAAACAATGAACATCACTTGTTTTGTATGGCTGTTGAAAGCTTATTATAATGAATTTGGGCCAGTGCATTACCATATATCATGGGTTTAAAAGGAGGCTGGAAGTGCCTTCTTAAGTAAAGACACTGTATTACAGGTTCTATGTTCACATTGTATTGCCTTATTTAGAAATTGTATTCCTCTCTGACACACGGTCACCCCTGCACCATGTCCTCTACACATTAGAGTACCTGTGTTTGACAGGTAATGGCTTCCTTGAGGTGAacattagattattattattaatttgggGTACTTTTACACATCTGTTGCATATTACACTCCTACAAACTTAACCCTCCAACGCCCCTCTGCAGCTGGATTTGTACTCTCAGGTGCCGTTTTTATCTTCCCAACACTTACTAATttatcaacacattttaaaccccagttaaacatttgttttacattgggACAAAAGTTTGCAATACATGTGGTGATGGGCTACGCAaagaaattatgaaataaatagtGGCCCTATTCTTTCTAACGGCAAGTGTTCAGTGTGTGGACATCCTGGCCTCCGCTGCCAAGGACACGGTTCATTCACCGTACTTGACTCCAGCCTGTGATATCAGGGCATCCCCGAGCAAGACTCCAGCAGAGAGCAGAGGGATAGTTTAGTCAGGGTGATGCAACAGACTTCTTGCGATTCAATGTATGGGTCAGATCTACTGTATTTATTCTACGGTTTTAAAAACACTGGATTAAAAGATTCGTTATACTTAAAAACCAA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13872 SLC7A6; solute carrier family 7 (L-type amino acid transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020424 True 3639 mRNA 0.49 10 18398834 18415770

Neighbor

gene id symbol gene type direction distance location
AMCG00020422 NA coding downstream 3538 18390806 ~ 18395296 (-)
AMCG00020416 NA coding downstream 64802 18314671 ~ 18334032 (-)
AMCG00020418 NA coding downstream 107229 18247657 ~ 18291605 (-)
AMCG00020417 NA coding downstream 151179 18235639 ~ 18247655 (-)
AMCG00020414 NA coding downstream 173204 18195740 ~ 18225630 (-)
AMCG00020421 NA coding upstream 3412 18419182 ~ 18431255 (-)
AMCG00020423 NA coding upstream 22434 18438204 ~ 18454657 (-)
AMCG00020434 NA coding upstream 459132 18874902 ~ 18901561 (-)
AMCG00020433 NA coding upstream 493208 18908978 ~ 18915511 (-)
AMCG00020437 NA coding upstream 899025 19314795 ~ 19316145 (-)
G63092 NA non-coding downstream 103 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 39924 18357825 ~ 18358910 (-)
G63015 NA non-coding downstream 212784 18184008 ~ 18186050 (-)
G62981 NA non-coding downstream 260536 18137480 ~ 18138298 (-)
G62951 cnot1 non-coding downstream 429143 17968233 ~ 17969691 (-)
G63096 NA non-coding upstream 20755 18436525 ~ 18436939 (-)
G63180 NA non-coding upstream 661707 19077477 ~ 19077758 (-)
G63257 NA non-coding upstream 1218524 19634294 ~ 19636243 (-)
G63346 NA non-coding upstream 1840152 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 2667492 21083262 ~ 21083461 (-)
G62961 NA other downstream 358874 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 382972 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 772645 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1581067 16794996 ~ 16817767 (-)
G62618 NA other downstream 1605667 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 1872800 20288570 ~ 20299843 (-)
G63464 NA other upstream 2896432 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 3715072 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4025022 22440792 ~ 22466767 (-)
G63679 NA other upstream 4128072 22543842 ~ 22544689 (-)

Expression


Co-expression Network