AMCG00020426 (ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670)


Basic Information

Item Value
gene id AMCG00020426
gene name ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18530178 ~ 18536093 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020426
ATGGCAGTGGCAGTGCAGTTTGGCATCCTGCCCGAGTGGCGTCTGCTCCTCCTAGACTTCCTCCCTGACCCACATTTCCTCCTGAGTGTGCCAGCGGTGCCAAGGCTCCGGCCTTCAGGCTTCCTGTCCGTGGCCCCCGTCTCCACCGCTCTGCTATCAGATGACACCTCTGCAGAATATCAAGGAGTACAGCTCATCTCACAAGAGTTAGAGCACAATGCGTTCACATGCTTGATTTATTCTCTGCTGGAGCTGGGTGACATGCGGCATGTGCACTCCAAGCTGAAGAAGCAGTACCAAGAGAAGATGGCGGAGCTCGCCCATGCAAACAGGAGAGTGGAGCAGCACGAGGGCGAGGTGAAAAAACTGCGGTTACGAGTGGAGGAGCTGAAGAAAGAGCTGGCCCAGGCAGAGGATGATCTCGACGAAGCTCACAATCAAACGAGAAAGCTGCAGAGATCTCTGGATGAGCAGGTGGAGCAGTCGGAGAACCTGCAGGTCCAACTAGAGCACCTGCAATCCAGGTAA

Function

symbol description
ccdc102a Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A).

NR:

description
PREDICTED: coiled-coil domain-containing protein 102A-like

GO: NA

KEGG:

id description
K16759 CCDC102; coiled-coil domain-containing protein 102

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020426 True 528 mRNA 0.55 6 18530178 18536093

Neighbor

gene id symbol gene type direction distance location
AMCG00020425 ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291 coding upstream 7322 18510463 ~ 18522856 (+)
AMCG00020419 NA coding upstream 131447 18395857 ~ 18398731 (+)
AMCG00020420 NA coding upstream 140267 18382143 ~ 18389911 (+)
AMCG00020415 NA coding upstream 171333 18338437 ~ 18358845 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding upstream 334548 18187199 ~ 18195630 (+)
AMCG00020427 LOC106562068,LOC107585958,LOC106903279,LOC106941941 coding downstream 73676 18609769 ~ 18617672 (+)
AMCG00020428 vac14 coding downstream 89875 18625968 ~ 18668640 (+)
AMCG00020430 NA coding downstream 135809 18671902 ~ 18680796 (+)
AMCG00020429 LOC106562044,LOC106587150 coding downstream 171713 18707806 ~ 18727969 (+)
AMCG00020432 NA coding downstream 229425 18765518 ~ 18769425 (+)
G63097 NA non-coding upstream 89259 18438202 ~ 18440919 (+)
G63069 NA non-coding upstream 135872 18394101 ~ 18394306 (+)
G63068 NA non-coding upstream 136872 18393066 ~ 18393306 (+)
G63058 NA non-coding upstream 169685 18360275 ~ 18360493 (+)
G62994 NA non-coding upstream 319149 18210769 ~ 18211029 (+)
G63203 LOC101154678 non-coding downstream 746865 19282958 ~ 19283173 (+)
G63208 NA non-coding downstream 790502 19326595 ~ 19329495 (+)
G63209 NA non-coding downstream 825779 19361872 ~ 19363484 (+)
G63248 NA non-coding downstream 1094181 19630274 ~ 19630567 (+)
G63259 NA non-coding downstream 1117131 19653224 ~ 19654272 (+)
G63045 NA other upstream 196146 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 458127 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 464389 18058558 ~ 18065789 (+)
G62895 NA other upstream 601274 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 1058309 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1061110 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1095232 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3599275 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3820081 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4517705 23053798 ~ 23062149 (+)

Expression


Co-expression Network