AMCG00020431


Basic Information

Item Value
gene id AMCG00020431
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18783271 ~ 18863273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020431
ATGGCAGATATGTCAGGCCAGGTCTGCTGTAAGGTATATAAGGCGGGCCTGAgcgagagagaagagagagacaatAGGGGCGAAGGTCTGGATTGGTACCTGACTCGAGTGGAGCTCATTGTGACTGATGTCAATGACAATGCTCCAGAATGGGCCATGGTGCCTGTCCCTTACTTGGCGGTTGTGTCTCTGGAGGCCCTTCCTGCTACAGTTGTCTATAAGCTCCTTGCTCGCGATGGCGATGAGGGCCTGAATGGAGAGGTGGAATACTTCCTGTCAGATGGCGGTGATGGGCGTTTTGATGTGGATAGGAAGAGCGGCCTGATTAAAACAACGGGGCTGCCCCTACAGAAGGACAAGGAGTATCTTCTGAATGTGTTTGCAGCTGACAAGCTGGGAAGCAGGAGTCTGCCGGCCGTGGTGTCCATTGTAGCAGGACCCAGGGCCCCGCAGTTTACCAGTGCCTCTTACTCCATCTCCATCCCAGAGAATACTCCTGAGGGACAGACATTCCTGGCTGCCACGGCCGTGTCCTTCCAGAAACAAGTCCTCAGCTACAGCCTCCTCATCAACCCCAGCAGCCTGTTCAGCATCCAGCAGGACACAGGGGAGATCAGCTTGACTCGCACCATCGACTTTGAGAGTGACCAGCACCGGTACCTCCTGCTCGTGAGAGCCAGCGAGAACCAGGACTCTCTCAGCAGTGCTGCCGAGGTTCTCGTTGTAATTACCGATGAGAATGACTGCGTACCAGAATTCCTGCAGTCTATCTACAGCAAAGACAGTGTCCCTGAGACTGTAACCACAGCAACATCCCTGTTACAAGTTTCCGCTAATGACTGTGACTCCGAGCTGAACGCGGAGCTCTCCTATTACACGCTGAGCCCGGACTTCACCATCTCTGCTCACGGCACCATCTTCCCAGCGAGACAGCTGGACTATGAGAGGCCTAACCACCTGTACGAATTTGTAGTCATGGCAGTAGACAAGGGAAAGGTCCCCAGAACAGGCACTGCCACAGTCAGGATACGCATGTCCAACGTCAACGATGAACCCCCGGAGTTTTCACAGAATGTCTATCGGACATTTGTCTCTGAGGATGCAGGGCCCAACACTTTGGTTGCCACAGTACTCGCCAAGGACCCTGATGGAGATGGAATCACCTACAGGATCACGACAGGAAACGAGGAGGGCAATTTTGTCATTGACAGCCAGAAAGGATTAATACGACTCCGTTCGAGCCCCCCGCCCAAGCTACAGGGAGTGGAGTACATTCTTAATGTCACGGCAACAGACGACAATGCTTCAGGTGGGCCACACCCTCTCTCAAGCATGGCTCAGGTGATTGTGGGAATCGATGATGTGAACAACAACAAGCCCGTGTTTGAGAAGTGTCAGCTTTACCGGGAGCATGCATCTGTGTTGGAGAACCAGCCGGCAGGAACCTTTGTCCTGCAGGTGCACGCAGTCGATGCTGATGAAGGAGCCAATGGGAAGGTGACTTATGGATTCATGCACAAAGATGGGACTATACCAGCTTTCACTATCCACCCAGAGACAGGGGTGATCGTCACAGCCAGGAGGTTTGACCGCGAGCAGCAGAGGGAGTACGCCATCACCGTCACGGCAACAGACCAGGCTGCAGAGCCTCTCATTGGGATCTGCCAGCTCAACATTTTCATTCTGGATGAAaatgacaatgacccgaagTTTGAAAACTTGCATTATGAGTATTTCCTGAGAGAGGACACTCTGATAGGCACGAGTTTTTTGCGTGTTGCTGCACATGATGATGACTACAGCACCAACGCAGCCATCATGTACTCCATGTCAACAGAGCAGCCCGAGTACCTCCGTGTCAACCCCCTCACCGGCTGGGTCTACGTCAACGAGCCCATATCCCAGAGGTCCTACATCTCTCGGCGGATAATAGCCACGGACGGTGGGAACAGGAGCAGCTCCGTGGAGTTGGCTGTTACCATCACCAATGTTAAGAACCAGCCACCACAGTGGGAGAGGGACAGCTATGAGGTGGTCATCCCCGAGAACACCATGAGAGACACGCCCATCGTGACCATCAAAGCCATTTCCCCACTGGGTGACCCACGAGTCACTTACAACCTGGAGGATGGGCTTGTTCCAGAGACCAACATGCCTGTGCGCTTCTATCTGACACCCAACCGAGAGGACAGCTCAGCCTCCATACTGGTGGCAGAGCCACTGGACTACGAGACCACAAAgaacttcatattgagggtgcGAGTGCAAAATGTAGCAGCTGTGCCCCTGGCTGCCTTCACTACTGTCTACATCAACATCACAGATGTGAACGACAATGTTCCTTTTTTCACCTCATCCATTTATGAGGCCACAGTAACTGAAGGAGCTGAAATAGGGACCTTTGTGCTCCAAGTGTCAGCCACTGACCTGGACCTTGGTCTGAATGGAAAAATTTCTTATTCCTTGCTGAATGACCGCAGTGGAGATTATATGGTTTTCCGTGTCGACCCTGAAAATGGGGCGATTTACACAGAAGCAGTGTTTGACAGGGAAATGAAGGGCTCCTATCTTCTGGAGGTGAAATCTATGGATGGCTGGGAGTCTGCCAGACCAGGCAAGCATGGGCAGCCCAATTCAGACACGGCGTATGTGCGCATTTTTATCAGCGATGTGAATGATAACAAGCCTGTCTTCGCTCAGAATGCCTATGAAGTGAACGTCGATGAGGACGCCGATGTCGGCTTTGCCGTTGTCACTGTCAGTGCTAATGACGAAGATGAAGGTGCCAATGCAAAACTGCGTTACCAGATCACTTCTGGCAATACCGGGGGAGTGTTTGATGTTGAACCTGAGGTTGGTACCATCCTCATTTCACAGCCACTCAACTACGAACAAGTGAAGAAGTACAGACTCTATATCCTGGCCTCTGATGGCAAATGGGAAGACTACACTGTTGTCAATATCAACGTGATCAATAAGAATGACGAAGCTCCGATTTTCTCAATGAATGAGTACTATGGCAGTGTGACAGAGGAGCTTGATGGATCCCCAGTGTTTGTGCTTCAGGTAACGGCCACAGACCCTGACAAAGATGCTGACCAAAGTGCCTTGAGATATTCTTTGCATGGACAAGGAGCTGAAAGTGAATTCATAATTGACGAGGTGACTGGGAAGATCTACGCGCAGAAGACGTTGAATCGGGAGGAGCGTGCAGTCTGGCGTTTTGTTGTCTTGGCTACTGACGAGGGCGGGGAGGGGCTCACTGGCTTCACTGATGTCATCATCAATGTGTGGGACATCAACGACAATGCTCCCATTTTTACCTGCATGCCTGATAACTGTAATGGGAACGTGCTGGAGAATTCCCCTGCGGATACGTCTGTTATGGAAATGACTGCCACAGATCTCGATGACACCACCGTTGGCCAGAACGCTGTGCTCACTTACAGAATAGTGGGCAATGCCAAGAATGGTATCAACATCGATTTGTTCAACATCAACCCCACCACAGGAACAATATTTGTAGCCCTTGGAAACCTGGACCGGGAAAAAGTGGATAAGTACTTTCTTGTTGTTGAAGCAAAAGACGGGGGAGGGATGACAGGAACCGGAACTGCAACCATCTGGGTAACCGATGTTAATGACCATGCTCCAAGGTTTACCAGTAATTTGTGCAATGCCAGAATCTCAGAGAACAGAGAGCTGAACTCTGCTGTCATGGATGTTTTGGCTACAGATGCAGATGTAGGAGAGAATGCCCAGTTGACTTTTAGCATTATTGGAGGTGACCCGGAGCAAAAATTCTACATTGAGAACCACAAGAAGGAACAGCATGGAACCCTCAGATTGAAAAAGAAACTGGACTACGAGAAATCGAATGAGCAGCACTTTAATCTGACCATCAAAGTGGAGGATCTTGATTTCTCCAGCATGATCCACTGTATTATTGAGGTTGATGACTACAATGATCATGCTCCTGTCTTCATTCCCCATTTTATAGTGCTCCCCCCCTTGCTAGAAAACATCCCAGTTGGCACTAGCATTACCAAGGTTACAGCCAGCGATTCAGACTCTGGTCTGAACGGAGACATTACATATAGCATCCTTCCAGATTCAGACCCATATGGGCAGTTTTCTATTGACCAAGCAGGTCAAGTCATAGTTGCAAGCCCATTGGATCGAGAAACTGTGGCTCAGCTTTATTTAGTCCTGTTGGCTACTGATCAAGGAAGTCCTGCACAGACAGGCAGTGCCACTGTGCAGCTGGCCTTGATTGACATCAATGATAATGGCCCAGAGTTTGAAGCTGCTTACATGCCAGTGGTTTGGGAGAATGTTCCTGGGCCTCAGATTGTAAGGATGAACCAGACTTCCCAGCTTCTCTATGCAGTTGACAGGGATAGCACAGAAAATGGGCCTCCTTTTTCATTCACGTTGCCTCCACAGAATCGAAACAGCACTGACTTTGTCCTCAGAGACAATGGTAACAACACAGCAACTGTGACAGCGCTGAGGACATTCGACCGGGAGAAGCAGAAGGAGTTTTATCTGCCAATCATCCTGAAAGATAGTGGGCACCCTCCAAAGAGTGCGACCAACACTCTCACTATCACCATTGGAGATGAAAACGATCATCCCCACCTCTCTGGAGACAAGGAGATTTACATCAACAGCCATAGAGGCAGAATGCCGACGACTGTTCTGGGGAAAGTGTACGCTCCAGATCCCGATGACTGGGACAACAAAACATATGCTTTTGAAGGATATGTTCCCAaGTATTTCATTCTAAACAAAAGGACTGGCTTCCTCATAATAAAGGAGAATGCCCCTCAGGGTACTTTTGAGTTGAAGGTGCGCGTGTCCGATGGCATCTGGCCTGATGCCGTGTCGAGTGTGAAGGTGCACGTGAAAGAGCTCAGGGACGAAGCCATCTACAACTCAGGCTCTATGCGAGTAGCAGATATGACGGCCAAGGAGTTTATTCGTAAAGGAGCAGATGGGAAGAGTCGTTATGCGATGTTCAAGCAGTTCCTGGCGGAGATATTGCCAGCTAACCCTGACAATATCAACGTGTTCAGCCTGATGAACGTGAAGGAGCGAATGCTGGACGTGAGGTTCTCAGTGCACAGCTCTCCCTACCTGAGGCCGGAGAAACTGTATGGATACATTGCTGCCTACAAACAGAAGCTGCAGTTGACTCTCCAGGTGAACATCAGTCAGGTCCACGTCGATGAGTGTGCTGAGACAGACTGCATGGGCAGTGCCGGCTGCACCAACCACCTGACCATCAGTGACACGCCCACCGTGGTGGATTCTGGGAGCATGTCCCTGGTGTCTGTGACAGTGGGGGTCACCGCAGTGTGCACCTGCAGTGGCCGGGAGCACTCACACCAGCCATGCGCTTCGTACCCCCGTAACCCCTGCCACAACGGGGGCGTCTGTATAGACAGCCAGAACGGATACAGATGTCAATGCCCTCCACAATTTGAAGGGCCTGAGTGCCAACAGACCAAGCACAGTTTCCATGGTGATGGCTatgcctggtttcctcccatAAGGCCCTGTTTTGAGAGCCATCTCTCCCTGGAGTTCATCACGGAGGTTGCAGATGGGCTGCTCCTGTACAGTGGCCCTGTGGCTGAGCTCCAGCCCTGGGACCCTGAAGACTTCATGGCAATAGagCTAATAAATGGCATGCCAgccttaaaaataaaccatggcTCAGGCACTTTGGTTCTGCAGTTGCCAAGCAACGTCAATGTAGCAGACAGACGGTGGCATCGTTTGGATGTAAGAAGCAACAGCAAGGAAGTGCACTTTACACTAGACAGATGCAGTGGCTCTGCAGTCATGGAGGTTGAGGGACTGGGCAACTGGCTCTCCTCCGAGGACCACTCTTCCTGCGAGGTCACAGGGGTCACGCCAAACCTGGACAGGCACCTGAATGTGACTCAGGTCTTGCAGCTGGGAGGCGTTAATGAGAAGCTGCCCTACAACTACCCCCAATTACAGCAGAGACACTTCACTGGCTGCATCCGAAACCTAATAATGGATAGCAAGTTCTATGATCTAGGCTCCCCCGCCGAATCCTTCAACAGCTCCCCCGGCTGCTTGATGACTGATGGGAACTGTGTGAACATGGGCTACCCCTCCTGTGGCCCCCGCGGCAGATGCCATGGGGAATGGGGCTCCTTCAGCTGCCAgacattttgtgtttgtctgccagAGGTGCCAGAGTTCTCATTCGATGGCAGGAGTTTTATCCACTACCAGCTGGCTGCTCCACTTCCCGCCAGGAAGACGCAGGTGCAGGTACTGATCAGAACCCGGAAACATGGCAGCTCCATCATCAGCTTCACCTCCAAAGAGCAGAAGGAATATCTCCGAGTAGAGGTATTCCAAGGTTTGCTTGCAGTGTTTTATAATCTGGGTGATGGGGACCACAGCTTCACACTGCCTTCCTACCGCATCGACAATGGGGAGTGGCACGAAATACACCTGGAGCGCCATGACAAAGAGTTCACCCTGCAACTGGATGGAGGAGGGGGCAAGAGGGAGGCCACATCGTCCCAGGGGAGGAACCGGGAGATTGTCATCGACCCCAGTGTGGTGATGCTTGGAAACTTTTTCCCTACCAGTCACAACCGAAGCTTTCAAGGCTGTATGAGGGACCTCCGGCTGAATAACCGATATGTGCCGCTGGACCAGAGTAAAGAGGGGGTGTCTATTGTGAACTCTCAGGGCGTGACGGCAGGCTGCTTCTCAGACGCCTGCAGGAAGAACAAGTGCACCCCACCCTTCACCTGCGTTGACCTCTGGAGGATGCATGAGTGCAGGTGCCCACCTGGTCACATGGTGATGGAGAACTCCACTGGCAAATTCTGTGTCTACACGCTGTGTGCCAACCGTCCATGCCACCATGGCACCTGTGTCGCCCAGTCGCCCTCCAAATTCACCTGCCACTGCCCTGAGGGCTACACGGGCCGGCACTGTGACATCACCCTGGCTATATACCGAGATGACGTGGGGCTCAGTTTCAGCTCCATGTTTGCAATCTGCATTTGCTTCTTGGCACTCCTAGTGCTTCTGCTTGGCATTTTCCTGTGGACCCGCTGGAAGAGCTATAAGGGCCTGAAGGAGGGGGTGTATCACGTGTCGGCTCACCATGATGGCTGGGAGGACATCCGCGAGAACGTGCTCAACTACGACGAGGAGGGCGGCGGAGAGCAGGACCAGAATGCCTATGACATGGCAGAGCTGCAGAAATCCCTGCAGCCCAGCCCGGCCCAGTCCATCTACACAAGGCCCAGAACTGGACACCTCCATCAGGACAAAGCAACGCTTCGGAGGGATGTCCCACCAGCCCGGACCCAGGTTCAGGGGCCTGTCAATGCCTCCCGGAAAAGCCTGTCCTTCTCGAGCCAGGACCTGGCGCGCTACCTCTGTGAAATCATCAGGGATGCCGACCAGCACCAGGAGAATCCGCCCTTTGACTCCCTGCAGGTGTTCTCCACCGAAGGCGGGGGCTCGCTGGCCGGGAGCCTCAGTTCCTTCAGCTCGGCCGGCCTCGATGAGGATAAGAGCTACGATTACCTGAAAGAGTGGGGTCCCAGGTTCGAGAAGCTCAAAGCACTTTATGAGAGAGCAGAGGCCACTGACATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020431 True 7665 mRNA 0.52 35 18783271 18863273

Neighbor

gene id symbol gene type direction distance location
AMCG00020432 NA coding upstream 13846 18765518 ~ 18769425 (+)
AMCG00020429 LOC106562044,LOC106587150 coding upstream 55302 18707806 ~ 18727969 (+)
AMCG00020430 NA coding upstream 102475 18671902 ~ 18680796 (+)
AMCG00020428 vac14 coding upstream 114631 18625968 ~ 18668640 (+)
AMCG00020427 LOC106562068,LOC107585958,LOC106903279,LOC106941941 coding upstream 165599 18609769 ~ 18617672 (+)
AMCG00020436 tshz3,LOC107696607 coding downstream 306039 19169312 ~ 19173385 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding downstream 963536 19826809 ~ 19832079 (+)
AMCG00020443 NA coding downstream 1372323 20235596 ~ 20237641 (+)
AMCG00020445 NA coding downstream 1392504 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 1436740 20300013 ~ 20310689 (+)
G63097 NA non-coding upstream 342352 18438202 ~ 18440919 (+)
G63069 NA non-coding upstream 388965 18394101 ~ 18394306 (+)
G63068 NA non-coding upstream 389965 18393066 ~ 18393306 (+)
G63058 NA non-coding upstream 422778 18360275 ~ 18360493 (+)
G62994 NA non-coding upstream 572242 18210769 ~ 18211029 (+)
G63203 LOC101154678 non-coding downstream 419685 19282958 ~ 19283173 (+)
G63208 NA non-coding downstream 463322 19326595 ~ 19329495 (+)
G63209 NA non-coding downstream 498599 19361872 ~ 19363484 (+)
G63248 NA non-coding downstream 767001 19630274 ~ 19630567 (+)
G63259 NA non-coding downstream 789951 19653224 ~ 19654272 (+)
G63045 NA other upstream 449239 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 711220 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 717482 18058558 ~ 18065789 (+)
G62895 NA other upstream 854367 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 1311402 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 733930 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 768052 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3272095 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3492901 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4190525 23053798 ~ 23062149 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035045 si:ch211-186j3.6 coding NC_007118.7 CM002891.2 47417529 ~ 47850702 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_16297047_16419596 NA coding CI01000026 null 16296642 ~ 16419739 (-)