AMCG00020438


Basic Information

Item Value
gene id AMCG00020438
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19631325 ~ 19636221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020438
TTTTTAAAATCTAGTACTGGATGTACAACATGGAGGTAACACAATTTTGCTGTTTCATACTAAGGTTACATTCTCTTGTGATTATCACTTTAGGAAGAAGAATTAAGATGCCTACACTGGTAGATGATGTAATGCGCCTCTGTTGCGAACTCTCCTCTAACCAGCAAATGAAGGCTGCTGTGAAAAATTCTGGGAAAGGGGCAATGATGGCGGGAGCAATAGCATTTGCTGGCGGTTTAATGGGAGGTCCTCCAGGGATTGCTGTTGGTGGTGCAGTGGGAGGATTGCTGGGCTGCTGGATGACTAGTGGGCAGTTTAGGCCACTTCCTCAGATCATAATGGAATTGCCCCCTCATCAGCAAGAGAAGCTTTACAATGATGTCATGGCAATCCTTGGTAACTTAAACTGGACCGACCTGGCTCAGCTGACTGCACTGGTTATGGGGAATGCAACACTGAAACAGCAGGTGGCAGCAGCACTTGTCAACTACGTCACACGGGAACTAAGAGCAGAAGTACATTATAGTGACTGATTATAGAAAAGCATAGTTTGTTTTCTATGAAGaaccatatatatattactaacTGTGTTCTGCTTTAGCCCTTTGTTGGAAAGCATTCAATTTATGAACTACAAGGTAGAAGAGAAGTGTAATCTCGATAGTGTGTAGCATGATGAACAaagactttaattaaaaatgctacACAAGGTATACAAACTGACCAACAATTACAGAAAGTAAGCAACATTGTATCGTTGAATTACCCATTTGATGaatatcaaaaaacaaatgcaagaatCATGTtcaatgctatatatataatcacataaGTGAATATCTGTTTCAGATATTGTGTCcaaaacagaatacaataaaactgtatatatagaaaCACTGCACTGTGGAAGGAAGGTAAATGGGACACTCCATTGATGTTCAGGCTGTGGTGATTGAGATATTTATTATGTCTAGTTCagtttaaaattgttaaaaagaGATGGAATAAAATCTTATACAGTTATAATCACAGAATATTAGAAATTTGgctttctgaaaaaaaatggctttgataaatcactgaaaaatatataacttaaatgaaaagcttaattgttaaatacatataaatacatgtttagaaATTAATTCAGAATTTCTTGGATCTCTAAGCTACTGTTTACATATCTTACAATTGTAAAGTGGATTTTCCAAATACCTTCTAGAAAAGGGGGTCTTTTGTATCCTCAGGATAgtccccccccacaaaaaaacactCATTCATTGTGGACTGGAGTGGCATTTGTTCAATAATTTAATGTgaagtttatatttgtattatacatttttttatttaattatttccagaatGCTGTGCCATTAAGTCACTATAATAATAGTTGTTGGTAGTGTAACTATATAGATACTTAGTGGAAATACTTAAGTGAAAATACCTGGTAGAAAATACATGAACTTGTGAGGAAATGTATGTCTGTAGGTTTTATTGGAATTTCTAGAAGTGAAGGATTTCTTgtttgaatacataaaaaaaaaaaaa
>TU79182
AGTGGACACCGGGCTCTTTTTCCCATGATCCACCGCGACCATGACTGTGTAGTGAAAGtaagaatacaataaaacaagtttGCGACATTGTAACTCAATCTGATGCTTTTAACAACGTTTTAGAGGAGAACATATTCCTGGTAACACGTGAGCGCAAATGAAGGCTGCTGTGAAAAATTCTGGGAAAGGGGCAATGATGGCGGGAGCAATAGCATTTGCTGGCGGTTTAATGGGAGGTCCTCCAGGGATTGCTGTTGGTGGTGCAGTGGGAGGATTGCTGGGCTGCTGGATGACTAGTGGGCAGTTTAGGCCACTTCCTCAGATCATAATGGAATTGCCCCCTCATCAGCAAGAGAAGCTTTACAATGATGTCATGGCAATCCTTGGTAACTTAAACTGGACCGACCTGGCTCAGCTGACTGCACTGGTTATGGGGAATGCAACACTGAAACAGCAGGTGGCAGCAGCACTTGTCAACTACGTCACACGGGAACTAAGAGCAGAAGTACATTATAGTGACTGATTATAGAAAAGCATAGTTTGTTTTCTATGAAGaaccatatatatattactaacTGTGTTCTGCTTTAGCCCTTTGTTGGAAAGCATTCAATTTATGAACTACAAGGTAGAAGAGAAGTGTAATCTCGATAGTGTGTAGCATGATGAACAaagactttaattaaaaatgctacACAAGGTATACAAACTGACCAACAATTACAGAAAGTAAGCAACATTGTATCGTTGAATTACCCATTTGATGaatatcaaaaaacaaatgcaagaatCATGTtcaatgctatatatataatcacataaGTGAATATCTGTTTCAGATATTGTGTCcaaaacagaatacaataaaactgtatatatagaaaCACTGCACTGTGGAAGGAAGGTAAATGGGACACTCCATTGATGTTCAGGCTGTGGTGATTGAGATATTTATTATGTCTAGTTCagtttaaaattgttaaaaagaGATGGAATAAAATCTTATACAGTTATAATCACAGAATATTAGAAATTTGgctttctgaaaaaaaatggctttgataaatcactgaaaaatatataacttaaatgaaaagcttaattgttaaatacatataaatacatgtttagaaATTAATTCAGAATTTCTTGGATCTCTAAGCTACTGTTTACATATCTTACAATTGTAAAGTGGATTTTCCAAATACCTTCTAGAAAAGGGGGTCTTTTGTATCCTCAGGATAgtccccccccacaaaaaaacactCATTCATTGTGGACTGGAGTGGCATTTGTTCAATAATTTAATGTgaagtttatatttgtattatacatttttttatttaattatttccagaatGCTGTGCCATTAAGTCACTATAATAATAGTTGTTGGTAGTGTAACTATATAGATACTTAGTGGAAATACTTAAGTGAAAATACCTGGTAGAAAATACATGAACTTGTGAGGAAATGTATGTCTGTAGGTTTTATTGGAATTTCTAGAAGTGAAGGATTTCTTgtttgaatacataaaaaaaaaaaaacatgaataaaatgatGTTCACATGCCAAAATCTTATACGGGTGCTTTTATCtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020438 False 1557 mRNA 0.35 2 19634387 19636167
TU79182 True 1601 TUCP 0.35 3 19631325 19636221

Neighbor

gene id symbol gene type direction distance location
AMCG00020436 tshz3,LOC107696607 coding upstream 457940 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 768052 18783271 ~ 18863273 (+)
AMCG00020432 NA coding upstream 861900 18765518 ~ 18769425 (+)
AMCG00020429 LOC106562044,LOC106587150 coding upstream 903356 18707806 ~ 18727969 (+)
AMCG00020430 NA coding upstream 950529 18671902 ~ 18680796 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding downstream 190588 19826809 ~ 19832079 (+)
AMCG00020443 NA coding downstream 599375 20235596 ~ 20237641 (+)
AMCG00020445 NA coding downstream 619556 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 663792 20300013 ~ 20310689 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 831167 20467388 ~ 20489997 (+)
G63248 NA non-coding upstream 758 19630274 ~ 19630567 (+)
G63209 NA non-coding upstream 267841 19361872 ~ 19363484 (+)
G63208 NA non-coding upstream 301830 19326595 ~ 19329495 (+)
G63203 LOC101154678 non-coding upstream 348152 19282958 ~ 19283173 (+)
G63097 NA non-coding upstream 1190406 18438202 ~ 18440919 (+)
G63259 NA non-coding downstream 17003 19653224 ~ 19654272 (+)
G63313 NA non-coding downstream 231564 19867785 ~ 19868282 (+)
G63318 NA non-coding downstream 560956 20197177 ~ 20197427 (+)
G63328 NA non-coding downstream 602609 20238830 ~ 20240926 (+)
G63334 vps35,LOC107659455,LOC107598694 non-coding downstream 612611 20248832 ~ 20251957 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 29001 19597203 ~ 19602324 (+)
G63045 NA other upstream 1297293 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 1559274 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 1565536 18058558 ~ 18065789 (+)
G62895 NA other upstream 1702421 17928328 ~ 17928904 (+)
AMCG00020470 NA other downstream 2499147 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2719953 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 3417577 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 3434190 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 4396816 24033037 ~ 24068457 (+)

Expression


Co-expression Network