AMCG00020439 (LOC107696663,LOC107556242,LOC107746488,LOC107726063)


Basic Information

Item Value
gene id AMCG00020439
gene name LOC107696663,LOC107556242,LOC107746488,LOC107726063
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19597203 ~ 19602324 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020439
ctttgacccatcaCGTGACGTTAAACAAACTATTccaaaaactaagaaaaaaataaagtcaaaatgAAGTTTCTCAGTTTGTTCGGACGGCTGAAATCCAATGTCATCGGCATGGTTCACGTTAAGGCGTTACCAGGTACTCCGCTGAACAGATTAACAATGGCTGAGATAACAGAAGAAGCCTGTCGTGAAACAGAAATATACAATGAAGCAGGCATTgatGGACTCATTATTGAAAACATGCATGACCTTCCTTATACAATGGCTGTTGGTCCAGAGGTCTGTGCGTCAATGACAGCAGTCTGCACTGCAGTGAGACAGATGTGTCCACTCCTTCCTATTGGAGTCCAGATACTGTCTGCTGCTAATCAACAGGCTCTTGCAGTAGCCCTGGCTTCAGGTCTTGATTTCATACGGGCTGAAGGATTTGTGTTCTCACATGTTGCCGATGAAggtcttttaaatgcatgtgctGGGGACCTCTTAAGATACCGCAAACAAATAGGGGCTGAACACATCCAGATTTTCACTGATATTAAAAAGAAGCACAGCTCCCATGCCCTGACATCTGATGTCAGTCTGTCTGAAACTGCTAAAGCTGCCGAGTTCTTTCTCTCTGATGGTCTCATTGTGACTGGCATAGCCACAGGGATGCAGGCTGATCCTCAGGAGCTCAGAGAAACTGGACAGGCAGTAAGAATCCCAATTCTGATTGGCTCTGGTGTAACCCATGAGAATGTGGAGAACTACCTCGATGCAAGTGGAATGATCATTGGCTCCTACTTCAAGAAAGGAGGGTTTTGGGCGAACAATGTTGACCCAGAGAGAGTCAGGAAATTTATGGGAAAGATGCACAAGCTGAGAGTATGAATCATCAAAATACTCtgatgtttgaaaataaaccatttgtttAAACAACATTTAGCATGGGTTTATTAATACTAGTATTAGTGGTTTGCAGAGagttttaataattgtaaatgtatgccTATGTTCaaatttctataaaaactgcatatatttcatatatcttaggaaataaaatgatagaaatgcataatttcagaccacatttttttttaacaaaaagtgatttatttgtatagtacTCAAAATTTTTATACCACCCCCATTCTATgctaaaaaaagtattgttaacatttttacaaactgATTTTGGAGTCTATAAATATAGTAGAACAACACATTTAAGTAacatccatttaaaatacagtgctattgtaatagaataaaaaaactaaataaccaCAATGTCACAAGTGAAAGCTTTCTCTTCCATTCATATTCCTAACAGCAAATTCAGgcaaaacacatgcactctTGACAGTCTGTCTGTACTATCTAATAGTACAGCAATGATTGCACGCTAACAGctgaagaacaaaaataatattacacgTGCAGCAACATATCAAGGTTTTCTATATGTGAATACAGCTACATTTGAACAATTATGTCCCAAAGAAGAAACACACCTGTACATCTACTTTTaagtatagatatatattattttgttatataccAAACCTACAGTATTGTAATGTAGAATGGTCTTCAGCTCGAAAAACAACTGATAAATGGTACTAGAATGAACCAAAACTATTCTGAAGGGTACTCCCATGTCAAAACTAAACAGTATAAAGTTTTGCTTAGAAAAAAACCAACCTAAAGGGATGTTTTTTCAGTACTATGAATTACAGgactttaaatgtataaatatatgggAATATGCAGGTCTTCTTTAATTTTCATAAATCCTCATAATGCTAGTGTgtaacagattaaaacaattggCAAAGTTGAAAGCCttaatttgcagttttaaaatgcacaaatcatATCTGTGCAATACCTGTTGTAATTTTTATGATACAGCTGGTACACTATAGTTGTGCACACAATCTTCTTTCAGTTGAATTTAATTGTGTCTtgcattgtgacatttaaaaataattgtcaaaATGATCTGTAATTCCTTTGAGGTGCATATCACTTGAGTTCCTGACTGTggtgaaaatgtaaatcaaaatgaaagtgaTGTAGTGAGTCCTGCGTTTGCTGCCGAGCACAATTCCATTCGCCATTTTATACTGATAGAAAAGTGTGCAGAGAAGTTTTGTTCCTGCATCTAAAATCGTGTTAAATATGTGCTATGCTCAATGTGTACAATTAGCATTCCCAATATTCCGTGATGAGACTATtcctaattatttaatgtattaggCACTTTGGATTTCTTCTTGTAGTCAAGAGAccactgaaatggaaaataagacAAGTTCAGCCAGTTGTAGTCAACTACAACACTGAAACATGTTACCTGTTACAATACCACCTGTAGGCAGCACTGTCATTCTTTATCAAGTAATTTCCTAAAACAGGTTGTACATGCAAGTTAGGTAGCAATTTATATGATTCTATAGGTGTAGTTTCG
>TU79166
caaaaactaagaaaaaaataaagtcaaaatgAAGTTTCTCAGTTTGTTCGGACGGCTGAAATCCAATGTCATCGGCATGGTTCACGTTAAGGCGTTACCAGGTACTCCGCTGAACAGATTAACAATGGCTGAGATAACAGAAGAAGCCTGTCGTGAAACAGAAATATACAATGAAGCAGGCATTgatGGACTCATTATTGAAAACATGCATGACCTTCCTTATACAATGGCTGTTGGTCCAGAGGTCTGTGCGTCAATGACAGCAGTCTGCACTGCAGTGAGACAGATGTGTCCACTCCTTCCTATTGGAGTCCAGATACTGTCTGCTGCTAATCAACAGGCTCTTGCAGTAGCCCTGGCTTCAGGTCTTGATTTCATACGGGCTGAAGGATTTGTGTTCTCACATGTTGCCGATGAAggtcttttaaatgcatgtgctGGGGACCTCTTAAGATACCGCAAACAAATAGGGGCTGAACACATCCAGATTTTCACTGATATTAAAAAGAAGCACAGCTCCCATGCCCTGACATCTGATGTCAGTCTGTCTGAAACTGCTAAAGCTGCCGAGTTCTTTCTCTCTGATGGTCTCATTGTGACTGGCATAGCCACAGGGATGCAGGCTGATCCTCAGGAGCTCAGAGAAACTGGACAGGCAGTAAGAATCCCAATTCTGATTGGCTCTGGTGTAACCCATGAGAATGTGGAGAACTACCTCGATGCAAGTGGAATGATCATTGGCTCCTACTTCAAGAAAGGAGGGTTTTGGGCGAACAATGTTGACCCAGAGAGAGTCAGGAAATTTATGGGAAAGATGCACAAGCTGAGAGTAT

Function

NR:

description
PREDICTED: uncharacterized protein F13E9.13, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06971 K06971; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020439 True 2455 mRNA 0.36 6 19597203 19602324
TU79166 False 833 TUCP 0.45 6 19597238 19600737

Neighbor

gene id symbol gene type direction distance location
AMCG00020436 tshz3,LOC107696607 coding upstream 423818 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 733930 18783271 ~ 18863273 (+)
AMCG00020432 NA coding upstream 827778 18765518 ~ 18769425 (+)
AMCG00020429 LOC106562044,LOC106587150 coding upstream 869234 18707806 ~ 18727969 (+)
AMCG00020430 NA coding upstream 916407 18671902 ~ 18680796 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding downstream 224485 19826809 ~ 19832079 (+)
AMCG00020443 NA coding downstream 633272 20235596 ~ 20237641 (+)
AMCG00020445 NA coding downstream 653453 20255777 ~ 20260661 (+)
AMCG00020444 NA coding downstream 697689 20300013 ~ 20310689 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 865064 20467388 ~ 20489997 (+)
G63209 NA non-coding upstream 233719 19361872 ~ 19363484 (+)
G63208 NA non-coding upstream 267708 19326595 ~ 19329495 (+)
G63203 LOC101154678 non-coding upstream 314030 19282958 ~ 19283173 (+)
G63097 NA non-coding upstream 1156284 18438202 ~ 18440919 (+)
G63069 NA non-coding upstream 1202897 18394101 ~ 18394306 (+)
G63248 NA non-coding downstream 27950 19630274 ~ 19630567 (+)
G63259 NA non-coding downstream 50900 19653224 ~ 19654272 (+)
G63313 NA non-coding downstream 265461 19867785 ~ 19868282 (+)
G63318 NA non-coding downstream 594853 20197177 ~ 20197427 (+)
G63328 NA non-coding downstream 636506 20238830 ~ 20240926 (+)
G63045 NA other upstream 1263171 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 1525152 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 1531414 18058558 ~ 18065789 (+)
G62895 NA other upstream 1668299 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 2125334 17459144 ~ 17471869 (+)
AMCG00020438 NA other downstream 29001 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 2533044 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2753850 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 3451474 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 3468087 23070411 ~ 23074945 (+)

Expression


Co-expression Network