AMCG00020440


Basic Information

Item Value
gene id AMCG00020440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19552958 ~ 19570840 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020440
ACAGGTGGTCATTGGCTGCCAAGACCAAATCCAGCACTGGAACAAGGTAGATAGTGACTATGAAGCACTTCAGCAGAGGCTTACTACATTGCCTGACAAACTTTCGTATGATATAATGGTACCATTTGGCCCTCTTGCCTTTATGCCAGGAAAACTTGTTCATACGAATGAGGTCACCGTTCTGTTGGGTGACAACTGGTTTGCAAAATGTTCAACAAAGCAGGCCATTAATCTGGTGGAGCACAGGAAGAAACATGTAAAAAATGCACTTGATGACTTATACAAAGTAGTGAAGAATTTTGAAACCAGAGTTGGATTCACAGAAGACCTTGAAAAACTGTCTGGTGCAAAGGCAGAATTTGTGGACATAAGAGAAGATGTTGAAAATGAAGATATCCTTACCAAAGgaaaacaaagattGGCCCACAAGCCGAATTCCAAACCGAAAATCCAAGATTTTTTTGAGTCCAATGTTGAGGGTGAAGAAGGTGATTCCAAAGGCATGAGTAGCCTCCTGTCTGAAGAAGACCTCTGGGCCAGACTGGATGAACTTGAGGCACAAGAAGAACAGCTGGATCATCAAGATCGAATGTCTGACAATGCAGACACAAATGGTGAAGACACAACCTCTTCCTCTGAGGAAGAGAAGGACTGTCACAGCGGGAATTTGTCCAACGGCCTGCACGAAAAGGAGATTTGGCCTCCAGTGACTCAGGGAGACTCTCGGCTGATCACCTGCCAGGTTAATGGCACAGGGCAGCCTCACAGTGATGATGAGGATGAGGGGAGCTTTGTGCCGACAATTTACTTCTCGCATACTGTGGAGTTAAAAAGGGTCAGGATAAACACGGGGAAGAACACAATGTTGAAATTCAGTGAGAGGAAAGAGGAGGCCAAgcgaaaaaggaaaaacagcaaCGGCAATGGCCATTCAGTCCATGATCTCCCCAAGATCAAAACGCCCGCAGACATTTAcagGGTGTTCGTGGATGTTGTAAATGGGGAGCTTGTCCCTCGAAAGTCCATCCTGAAGTCTCGGAGCCGAGAGAACAGCGTCTGCAGCGACACGAGCGAGAGCAGCACGGCGGATTTTGATGACCGCCGAGGGTTCAGCCGTAGCATGAGCCATGATGAGGCCACACACAGTGACACCAGCGAAGGGATCCTGGAAGAGGAGAGCTCCCCCAGCAAACCTCTGCCCCTGCCAGGGCTCTTCGAAgCATTTTCTGGGACAGTGGTGGAAAAGGACCCCATGTTGCCGTCAATGATTCCTCACCTGACTATTGTTCCCCCGGCCCTCCCCACGATTCCTGAGCGGAAATCTGAGGAGCTGGTCCCTGAAGCTCTGACAGAGCCTACTAAGAGGGTCTCGAAGTTCAAAGCTGCCAGGTTGCAGCAGCAGAAATAACTATTACATGGGCTCAAGCCATTTTTAGGTTTAATTTTTACTGTAACACTTTAAGATGAGCAGGTAACATCTgtctgcactttttttttttctttttctttccccttctgTTTGATCatatcttttttattatcatattttCACAGGTTCGCTTTCTGCTTCTACAGATATGCTATTTTTGTTAGAGCCAGCTGCAATGTTTAAAAGAAGGGTGTTACCCTTGCACTTTCATCATCGTGACACTGTACCTTGTATTCAGGCTTTCATGAAACCGCCAAATGAAAGTGTCATGGTGCAACTTCAGTGCAATCTTTGTACACTGAATATTATAATGCCTAGAATTCCAAGTACATTTTTTGGTGTTGTAACTTTGGCAGCTCATCCTTAGGTTCACAAATGTGATTTAGTCTAGAATTCAGTTCTGTGACTCTCATTtatcagcatttattttctgtgacagCGTGGTGCTTGTACCCAGAGGTTTAAGACCAAAAGATGAACTTGTTGCTGGTTTGTCATTTTTCAGCCGGTGTGCATGGTTTGTGTAGTCAGTCAGTCTCATGTTGATCTCATATTGACTGAATAATCCTTTTAACTGTGAATCGCTGATTGGCTTGAGTTAATTTGCTGGCCTTTTTCAAAGCAatgctaaaatgtaattgatatgaTTTTCTCACatgcttttttctgtttcagcatAGGTCTGAGAAAATGCAAAGTTTGATcttcatacatttaatacatttattttttttgtttatttttttgtgcctGTTCCTGTAATTTCCATCGACCACAGTCTGTGGCTTATTACggcttaaaataaaagaaaccatGTTAGTCAAATGCTATGTcttgaaataactaaataaatgaacttTCTCAAAGA

Function

GO: NA

KEGG:

id description
K17560 URI1; unconventional prefoldin RPB5 interactor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020440 True 2297 mRNA 0.43 10 19552958 19570840

Neighbor

gene id symbol gene type direction distance location
AMCG00020435 LOC107556245,LOC106562015 coding downstream 114521 19323395 ~ 19438437 (-)
AMCG00020437 NA coding downstream 236813 19314795 ~ 19316145 (-)
AMCG00020433 NA coding downstream 637447 18908978 ~ 18915511 (-)
AMCG00020434 NA coding downstream 651397 18874902 ~ 18901561 (-)
AMCG00020423 NA coding downstream 1098301 18438204 ~ 18454657 (-)
AMCG00020441 NA coding upstream 19827 19590667 ~ 19596696 (-)
AMCG00020455 NA coding upstream 30102 19600942 ~ 19606909 (-)
AMCG00020457 NA coding upstream 52345 19623185 ~ 19626136 (-)
AMCG00020456 NA coding upstream 74854 19645694 ~ 19646512 (-)
AMCG00020450 LOC104957704 coding upstream 81983 19652823 ~ 19656766 (-)
G63180 NA non-coding downstream 475200 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1116019 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1154227 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1194048 18357825 ~ 18358910 (-)
G63015 NA non-coding downstream 1366908 18184008 ~ 18186050 (-)
G63257 NA non-coding upstream 63454 19634294 ~ 19636243 (-)
G63346 NA non-coding upstream 685082 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 1512422 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2811524 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2812677 22383517 ~ 22391215 (-)
G62961 NA other downstream 1512998 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 1537096 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 1926769 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 2735191 16794996 ~ 16817767 (-)
G62618 NA other downstream 2759791 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 717730 20288570 ~ 20299843 (-)
G63464 NA other upstream 1741362 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 2560002 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2869952 22440792 ~ 22466767 (-)
G63679 NA other upstream 2973002 22543842 ~ 22544689 (-)

Expression


Co-expression Network