AMCG00020444


Basic Information

Item Value
gene id AMCG00020444
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20300013 ~ 20310689 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020444
TTTCAATAGGATATGGGCATTGACGTGGATGCACCGTTTATAGCACAGTGAATAGTGCTAGGCTGGAGCTTATACAGTATaagaatatatacacatatatttatttggttaaatCTGTATAGTCTTGAAGTTAACTCTTATTCACCggtaataattaattataagaaAAGCATATCACTTATTTGGGAATAGTCTGCTGCTTCTGTGTACATTGATGttagaatacatattttgtattttattttattgtcctcTCGCAACAAATTAAATCGTGCAAATGCATCGTTCTCCAGCAATTGCCAGGTCACTGGTCGGAGGTGTCTTGGACCGTTATACACCTTGGAAAACCTATCGCTGCTTACCTGCCTTGAGACTTAGACAAGGCACTGAAGTATGTGCAGTGCGCAGGCTGAGTACAGCTGAAGTCTCCGTAGTGAGCAGCGAAAATGGAAAGATCAGAGAAAAAGTATTGACGATGGAGACGCTGAATCCTCACATAGTGGCGGTGGAGTACGCAGTGAGGGGCCCGATTGTCATGAAAGCCGGGGAGATTGAAACAGAGCTACACCAGGGTGTGAAGAAGCCGTTTACAGAGGTCATTAAAGCCAACATTGGCGATGCTCATGCCATGGGACAACAGCCTATAACTTTTCTTCGCCAGGTGGTTGCTCTGTGCACGTGCCCAGAACTACTTGACAGCCCTGTGTTCCCAGAAGATGCAAAGATGAGAGCTCGTCGCATCCTGCAGGGCTGTGCGGGAAAGAGTATAGGATCTTACAGTGCAAGTCAGGGTCTGAGCTGTATCCGAGAGGACATTGCAATGTACATGGAACAACGAGACCAAGGTGTACCAACAAACCCAGACAATATTTATCTCTCCACTGGGGCCAGTGATGGCATTGTGagcATTCTGAAACTGTTAGTGACAGGAGAAGGGACCTCGCGCACTGGGGTGATGATTCCCATCCCTCAATACCCACTTTACTCGGCGGCCATTTCTGAGCTTGGGGCAGTGCAGGTGAACTATTACTTGGATGAGGATCACTGCTGGGCCCTGGATGTGAATGAGCTGCACAAGGCATTGAGTGCAGCCAAAAAGTACTGCAATCCCAAGGTGTTATGCATCATCAATCCAGGCAACCCAACAGGTCAGGTTCAAAGCAAGAAGTGCATTGAGGAAGTCATTAACTTTGCTTATGAGGAGAAACTTTTCCTTCTGTCTGATGAGGTTTACCAGGATAACGTCTATTCTCCAGACTGTCAGTTCCACTCGTTTAAGAAGGTCCTCTATGAGATGGGACCAGAGTATTACAACACTGTTGAATTGGCCTCCTTCCACTCCACCTCAAAAGGATACATGGGAGAATGTGGCTTCAGGGGGGGCTACATGGAGGTGATTAACCTTGATGCAGAGGTGAAAGCTCAGATGGTCAAGCTCCTCTCAGTCCGTCTCTGTCCTCCAGTGTCTGGACAGGCAGCCATGGATGTCGTGGTCAACCCCCCACGGCCTGGAGAGCCTTCTTTTGAGCTGTTCGCCAAGGAAAAGAATAGTGTGCTGAATACACTGGCTGAGAAGGCCAAACTCACAGAGAAGATCTTGAACACGGTCCCTGGGATCAAGTGTAACCCAGTGCAGGGTGCTATGTATGCCTTTCCCAGGATTTTCATCCCTCCTAATGCAGTTGAAGAGGCCAAGACATTAGGAATGCCCCCTGACATGCTGTATTGTCTACGGTTGCTCGAGGAGACTGGAATATGTATTGTGCCCGGCAGTGGATTTGGGCAAAAGGAGGGAACCTaccatttcagAATGACAATATTGCCGCCTACTGAAAAGCTGAAATTGCTCCTAGAGAAAGTCAAAGAGTTCCATATAAACTTTCTACAGCACTATTCCTCCCTGGATGCCACCTCAAGATGAAGAGAATTGGTTTAGTATCAAGTATTAGGGTTTACTCCAAGTTCTAGAAACAAAGGGCTCCTCGGATCAGTCTTGGACTAACGGATGTCAATTTATGTAGGTTAGTCCAGGATGAGTGCTAATCGAAGTTTATGAAACCAGCTAAAATAGTTTTAAGAGAATGCAAGTTATGTGTATTTTCCCTCGAATGTAAATATGAGTTCCATAGAAAAGCTGACACAATAGCTACTTATAATAGGACTTGTGTTTGAAAGACACTTGTGCCTTGTGACAAGGTGGGAAGGGGAAGCAAAAACCtcaagggaaaaacaaacatgcagcaTTTGAAACTGAGaaaccattcttttttttttctctgaagatGGTCTTCAGTTACGTCTGCCAAAACTTCACCAACAATAAGATGTCCATTTTAGTTGCCAACACAAattacaatctttttttttctacttcatATGAATTTGTACTTTAATGATCATGATTTTAAACGGGACCTCAGATAAAATGTGAAAGATGGTAGTGCCAAACAGTGTTCAAAACCTTACAACAATGTCCTTACAGAAGACAACCGTCTGGTGCTAAATctgttatacaaataaatcattgtatttattgatttgagtAACAAAATGAACTGGTTAATAAGAAGGATATTgggcatttttaattaatagtaTATAATGTAGTTCTTTTTCCGATTTATTTAGCACACATTGGTTCAAGAACCAGTCTCATGATGTCTCAGACTTTCATGatgaatacacaaaaacaatactgCACACAAAGTTAACCTCCaaattctattattttttctttgataaTATCCTACTGCAGAAgatgtgaaatacattaataaacaggGGACAGGATGCTTGTGGTTCCACAAGTATATAAGCATATTTATGTGCTGGAAAAAATGCATCCATGTGGTATTTTCTGATCTAaatgacatacagtgagggaaaaaagtatttgaacccctgctgattttgtacgtttg

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020444 True 2921 mRNA 0.42 11 20300013 20310689

Neighbor

gene id symbol gene type direction distance location
AMCG00020445 NA coding upstream 39352 20255777 ~ 20260661 (+)
AMCG00020443 NA coding upstream 62372 20235596 ~ 20237641 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding upstream 467934 19826809 ~ 19832079 (+)
AMCG00020436 tshz3,LOC107696607 coding upstream 1126628 19169312 ~ 19173385 (+)
AMCG00020431 NA coding upstream 1436740 18783271 ~ 18863273 (+)
AMCG00020458 phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686 coding downstream 156699 20467388 ~ 20489997 (+)
AMCG00020459 phkb coding downstream 190802 20501491 ~ 20526222 (+)
AMCG00020460 NA coding downstream 324177 20634866 ~ 20658252 (+)
AMCG00020461 NA coding downstream 350984 20661673 ~ 20672190 (+)
AMCG00020468 NA coding downstream 1720436 22031125 ~ 22047368 (+)
G63334 vps35,LOC107659455,LOC107598694 non-coding upstream 48056 20248832 ~ 20251957 (+)
G63328 NA non-coding upstream 59087 20238830 ~ 20240926 (+)
G63318 NA non-coding upstream 102586 20197177 ~ 20197427 (+)
G63313 NA non-coding upstream 431731 19867785 ~ 19868282 (+)
G63259 NA non-coding upstream 645741 19653224 ~ 19654272 (+)
G63360 NA non-coding downstream 1010 20311699 ~ 20313272 (+)
G63433 NA non-coding downstream 253128 20563817 ~ 20580433 (+)
G63448 NA non-coding downstream 773428 21084117 ~ 21084538 (+)
G63477 NA non-coding downstream 1328307 21638996 ~ 21639656 (+)
G63562 NA non-coding downstream 1897019 22207708 ~ 22208031 (+)
AMCG00020438 NA other upstream 663792 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 697689 19597203 ~ 19602324 (+)
G63045 NA other upstream 1965981 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 2227962 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 2234224 18058558 ~ 18065789 (+)
AMCG00020470 NA other downstream 1824679 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 2045485 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 2743109 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 2759722 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 3722348 24033037 ~ 24068457 (+)

Expression


Co-expression Network