AMCG00020446 (cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775)


Basic Information

Item Value
gene id AMCG00020446
gene name cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20288570 ~ 20299843 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020446
GATTGATGTCGATTCGGCGAGTGTCGGAGCTCCCGGGTCGGATCAGCTGCGCTTCATCCTTGCCGAGAGAGCAGCGGACACAAGTTTCAGTGCAATATTGCTGCTTTTAAATTCATCCATATAGTACTCTAACAAAGAAGCTGAGGATGTCGgcaaataaagcaaagaaagtTAAAATGGCTACCAAATCGTGTCCAGAATGCGATCAACAGATTCCTGTAGCATGCAAGTCGTGTCCCTGTGGCTATGTGTTCATTAGCCGAAAACTTCTCAATGCCAAACAAACCGAGAAATCGCCTCCAGCAATAGATAAATCAGACGCTAAGAGGAGAAGAACAGAAAGGATACGCAGAGAGAAAATCAACTCGGCTTCCACCAAAGACATGGAAAACCGAAAACGCTCTCGTTCAAACAGCCATTCGGAGCACATTCGCAGAGGAAGGGGGAGACCAAAGGCAGCATCCCATAAAaagcaagaagaagaaaaagaaaagcaagaaaaagaaatcGATATTTATGCCAATCTTTCAGATGAGAAAGCCTTTGTCTTTTCTGTAGCTTTGGCAGAAATCAACAGAAAAATCCTTGGTCAAAGACTCATCTTATAATAAGAATTTGTAATGGAGTGACCATGAAATGAAGCTACTCAGGACACATGCTGCAGAGACTTGTGAATGACCACAGAGGACCTAGCAGGGTGAATTGTTACCCACAAACCCCATCGTTATATGAAGGACTCAATCGGCCTACCAGTCTGGGCTGAGTATTTCTTGGGGACACTAACAGTGTGGAAATTGGGTATGCATGTGGATGCATATGGaactactatttttaaatgtttccaaagaATGAATTTAGATGGCATAAGAAatgcaaacctttttttatcagattttatatcaaatatattatgcattcaatatggcaaacacaaaaatggaatggaaccttttaaaaaatatgatgtaCTTGGGGGGGAACTTAATGAGAGTTCTGGTACTATAACAGTTTTAGTACTGataaaaaatcttaaatgtCAGAGGTTTACTCATGTATAAGGCCTTCTGTTTATCTTAAGATATAGATGCAGATGAGTTATGAAGTCTGAGATGCTTTTGTATAATGTTTAGATTTTGGGAATATGCCTTTGACGTTTATATTTATTAAGCCTGTAActtcttaatttaattgcatttttaaaattgttttcacAGTTAATTAAGcatacagattttgtttttaaaatatgtactcTGTACTCAAATAAATTTGAATGTCTAGATGCAATTATGTGAAGTTACCTTTAATGACTTGTAGAATGTCCGTTTGACGACAAGCTAaagttgttgtctttgtttaatCTTATCaacttcaaatatttgaattgtttaCCAAATACTGCCTACAGCAAAATGTTTATAAAGGTCACTGgatgttacagtacagtaccttCTGTAATTTACTTGAAAttccacatttgttttgaacaaaaaaaacaatgaaagaacTGATCATTCTAACTAGCACTTAAGTGCAAAAATCTCTTAATTGTAATAGAAAATCAGTCTTATCAGAAGGTTATGTGAATTTTCTTAGGAAATGcaagtatgtatgtgtatttttaaaccgtgcaacagaaaaaaaaacacatgcattttattattctttagaCAGACATACATTTCTGGCCACACTAAGAATTTTATTTCCCCTTCAcaataaatctgttttaattaaaaagtattctGTAACTTTGCATTcttatgttggtttgtttgcagTTCGCTCAAATTCATTGCTTTTGGTCTTCTGTAAATGTGGCATTCAAATTATATGAAAACATgcctgaataaataaacacaatggtgttatttattttgcagtgtgaAGAACTTAAATTCAATATAACTGTTGGCCAGAATTACTAAAGATGACTGGTCTAGTGTAAACAGCCAG
>TU79287
GGAAAAGGCACCGTCTCAGTAGTTCGACATGCTGCACCCAGGCTGACAGCTGCAAAACAGATGTTTTAAGAGTTTGTTGTGAGAAAAGCGATGCAGCCTCCCTCTGTAGCACGCTGGGGTACAGATGAATATCAAGTCTGCATGGAGTAACACATTTATGCAGAGCCCAGATTCCTGTAGCATGCAAGTCGTGTCCCTGTGGCTATGTGTTCATTAGCCGAAAACTTCTCAATGCCAAACAAACCGAGAAATCGCCTCCAGCAATAGATAAATCAGACGCTAAGAGGAGAAGAACAGAAAGGATACGCAGAGAGAAAATCAACTCGGCTTCCACCAAAGACATGGAAAACCGAAAACGCTCTCGTTCAAACAGCCATTCGGAGCACATTCGCAGAGGAAGGGGGAGACCAAAGGCAGCATCCCATAAAaagcaagaagaagaaaaagaaaagcaagaaaaagaaatcGATATTTATGCCAATCTTTCAGATGAGAAAGCCTTTGTCTTTTCTGTAGCTTTGGCAGAAATCAACAGAAAAATCCTTGGTCAAAGACTCATCTTATAATAAGAATTTGTAATGGAGTGACCATGAAATGAAGCTACTCAGGACACATGCTGCAGAGACTTGTGAATGACCACAGAGGACCTAGCAGGGTGAATTGTTACCCACAAACCCCATCGTTATATGAAGGACTCAATCGGCCTACCAGTCTGGGCTGAGTATTTCTTGGGGACACTAACAGTGTGGAAATTGGGTATGCATGTGGATGCATATGGaactactatttttaaatgtttccaaagaATGAATTTAGATGGCATAAGAAatgcaaacctttttttatcagattttatatcaaatatattatgcattcaatatggcaaacacaaaaatggaatggaaccttttaaaaaatatgatgtaCTTGGGGGGGAACTTAATGAGAGTTCTGGTACTATAACAGTTTTAGTACTGataaaaaatcttaaatgtCAGAGGTTTACTCATGTATAAGGCCTTCTGTTTATCTTAAGATATAGATGCAGATGAGTTATGAAGTCTGAGATGCTTTTGTATAATGTTTAGATTTTGGGAATATGCCTTTGACGTTTATATTTATTAAGCCTGTAActtcttaatttaattgcatttttaaaattgttttcacAGTTAATTAAGcatacagattttgtttttaaaatatgtactcTGTACTCAAATAAATTTGAATGTCTAGATGCAATTATGTGAAGTTACCTTTAATGACTTGTAGAATGTCCGTTTGACGACAAGCTAaagttgttgtctttgtttaatCTTATCaacttcaaatatttgaattgtttaCCAAATACTGCCTACAGCAAAATGTTTATAAAGGTCACTGgatgttacagtacagtaccttCTGTAATTTACTTGAAAttccacatttgttttgaacaaaaaaaacaatgaaagaacTGATCATTCTAACTAGCACTTAAGTGCAAAAATCTCTTAATTGTAATAGAAAATCAGTCTTATCAGAAGGTTATGTGAATTTTCTTAGGAAATGcaagtatgtatgtgtatttttaaaccgtgcaacagaaaaaaaaacacatgcattttattattctttagaCAGACATACATTTCTGGCCACACTAAGAATTTTATTTCCCCTTCAcaataaatctgttttaattaaaaagtattctGTAACTTTGCATTcttatgttggtttgtttgcagTTCGCTCAAATTCATTGCTTTTGGTCTTCTGTAAATGTGGCA

Function

symbol description
zgc:92818 Orthologous to human C16orf87 (chromosome 16 open reading frame 87).

NR:

description
PREDICTED: UPF0547 protein C16orf87 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020446 True 1956 mRNA 0.35 4 20288570 20295692
TU79287 False 1781 lncRNA 0.36 5 20288703 20299843

Neighbor

gene id symbol gene type direction distance location
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding downstream 12101 20263295 ~ 20276469 (-)
AMCG00020447 vps35 coding downstream 33354 20238327 ~ 20255216 (-)
AMCG00020449 NA coding downstream 62293 20215104 ~ 20226277 (-)
AMCG00020453 NA coding downstream 581363 19706484 ~ 19707207 (-)
AMCG00020448 NA coding downstream 595895 19689373 ~ 19692675 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding upstream 19836 20319679 ~ 20327023 (-)
AMCG00020451 NA coding upstream 32844 20332687 ~ 20354695 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding upstream 63267 20363110 ~ 20366992 (-)
AMCG00020462 NA coding upstream 163361 20463204 ~ 20464258 (-)
AMCG00020464 NA coding upstream 241675 20541518 ~ 20559873 (-)
G63346 NA non-coding downstream 32171 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 652327 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1210812 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1851631 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1889839 18397467 ~ 18398731 (-)
G63447 NA non-coding upstream 783419 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2082521 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2083674 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2115492 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 2245925 22545768 ~ 22546057 (-)
G62961 NA other downstream 2248610 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2272708 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2662381 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3470803 16794996 ~ 16817767 (-)
G62618 NA other downstream 3495403 16792866 ~ 16793167 (-)
G63464 NA other upstream 1012359 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1830999 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2140949 22440792 ~ 22466767 (-)
G63679 NA other upstream 2243999 22543842 ~ 22544689 (-)
G63819 NA other upstream 2854849 23154692 ~ 23161900 (-)

Expression


Co-expression Network