AMCG00020447 (vps35)


Basic Information

Item Value
gene id AMCG00020447
gene name vps35
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20238327 ~ 20255216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020447
CAGGGTTAGCTGACAGTAGTCACATGATAAGGACCGCTGAAAGGGGGTAGTGTTTCCTGAAAGTGAATTGGTAATCATGCCTACCACACAGCAGACTCCTCAGGATGACCAGGAAAAGCTTCTTGATGAAGCAGTTCAGGCTGTTAAGGTTCAGTCATTTCAAATGAAGCGCTGCCTGGACAAGAATAAGCTCATGGATGCCCTGAAACATGCCTCCAATATGCTTGGTGAGCTGAGGACTTCAATGCTATCTCCAAAGAGTTATTATGAACTCTATATGGCCATTTCTGATGAGCTACATTACCTTGAGGTCTACTTGACTGATGAGTTTGCTAAGGGCAGGAAGGTGGCAGATCTGTATGAGCTTGTCCAATACGCAGGAAATATTATCCCAAGGCTgTACTTGCTGATTACTGTGGGTGTGGTGTATGTGAGGTCATTTCCACAGTCTCGGAAGGATATCCTGAAGGACTTGGTAGAAATGTGCAGAGGAGTACAGCATCCACTGCGTGGGCTTTTCCTCAGAAACTACCTTCTCCAGTGCACTAGAAACATTCTGCCAGATGACGGGGAACAGCCTGAAGAGGAGACCACTGGAGACATTAATGACTCGATGGACTTTGTGCTCCTGAACTTTGCGGAGATGAACAAGCTCTGGGTTCGAATGCAGCACCAGGGACACAGCCGAGACCGAGAGAAGAGAGAGCGGGAGCGTCAGGAGCTGAGAATTCTCGTTGGGACCAACCTGGTTCGTCTGAGCCAGCTGGAGGGAGTCAATGTGGAGAAATACAAACAGATTGTGCTGCCAGGGATCTTGGAGCAGGTAGTCAATTGCAGAGATGCCCTGGCTCAGGAATACCTCATGGAATGTATTATTCAGGTCTTTCCTGATGAGTTTCACCTGCAGACTCTCAATCCTTTCCTGCGTGCCTGTGCTGAGCTGCACCAGCATGTGAATGTCAAAAACATTATCATTGCGCTGATTGACAGGCTTGCTTTGTTTGCTCACAGGGAGGATGGCCCTGGTATTCCAGCAGATATTAAACTGTTTGATATTTTCTCACAGCAAGTAGCTACAGTTATACAGTCACGGCAGGACATGCCTTCAGAGGATGTAGTTTCATTGCAAGTGTCCCTCATCAACCTGGCAATGAAATGCTATCCTGACCGAGTAGACTATGTGGACAAAGTCTTGGAGACTACTGTTgaaatctttaacaaattaaacctTGAACAtATTGCAACGAGCAGCGCAGTCTCAAAGGAGCTGACAAGACTATTAAAGATCCCAGTCGACACCTACAACAACATTCTGACAGTGCTGAAGCTCAAACATTTTCACCCTCTGTTTGAGTACTTTGATTATGAGTCTCGGAAAAGCATGAGCTGCTATGTACTGAGCAATACTCTGGACTACAACACGGAAATTATAGCACAGGAGCAGGTGGACGCCATTCTAAACCTGGTGTCGACACTAATCCAAGACCAGCCAGACCAGCCGGCGGAGGACCCTGACCCCGAAGACTTTGCAGAGGAGCAGAGCCTTGTTGGAAGATTCATTCATCTTCTGCACTCTGAGGACCCAGATCAGCAGTATTTGATTTTAAACACAGCCAGAAAACATTTTGGGGCTGGTGGGAATCAGAGGATTCGATACACACTACCGCCTTTGGTATTTGCCGCTTATCAGTTGGCTTTCCGCTACAAGGAAAACTCCAAAGTgGATGACAAGTGGGAGAAGAAGTGTCAGAAGATCTTCTCCTTCGCCCACCAGACCATCAGTGCTCTGATCAAGGCTGAGCTGGCAGAGTTGCCCCTCAGGCTCTTCTTACAGGGCGCTCTGGCAGCCGGGGACATCGGCTTTGAGAACCACGAGACGGTGGCATATGAGTTCATGTCACAGgcATTTTCTCTATACGAGGATGAAATCAGTGATTCTAAGGCCCAGCTGGCAGCAATCACACTGATAATTGGAACATTTGAGCGGATGAAATGCTTCAGTGAAGAGAACCATGAACCTTTAAGGACACAGTGTGCACTGGCAGCCTCCAAACTCTTGAAGAAACCAGATCAGTGCCGTGCTGTGAGCATCTGTGCTCATCTCTTCTGGTCTGGTCGCAACACGGATAAGAATGGAGAAGAGatCCATGATGGTAAGAGAGTAATGGAGTGCTTGAAGAAGGCACTGAAGATAGCCAATCAGTGCATGGATCCTTCATTGCAAGTCCAGCTCTTCATTGAGATCCTCAACAGATACATCTATTTctatgaaaaggaaaatgatgCGGTGACCGTTCAAGTCCTAAACCAGCTCATCCAGAAGATAAGAGAAGATCTTCCAAACCTAGAGGCAAGTGAGGAAACggagcaaataaacaaacactttcacaacaCACTGGAGCATCTGCGCCTGCGGAGAGAGTCGCCTGAGGCTGACGGGCCAATCTATGAAGGCCTGGTTCTGTAGAGGGAAGAGAAATGGCAAACTGCACTAATTAAACTATTCCATCCAGTGGTAACCCTGCCCTTCCTTGCCccatctattatttttttcttttttcttttcttttgaactAGCCATGCCACTCTAGTGTTAGACTCCTAGAGCGTGCCTTTACAAGGTGCCAGGAATAAAAGGTTTCCACTGTACTTACTAGCACTTCTCTCACATCCGCATTCCTTCATTTTAAGAACACACCAGTAAAAGGCTGCAGATGAAAAACGTGTTGCAATCCCCTGCCCCACCCTGCCAATGACAAACTAATTCCAAGATATTCTGGCATAATCTAGCATGAGTAATGGATTTACATGTTTGCCCATCAAGCTCATCCCAATAAGTAGAAGGGTAATGTTTTGATCTAATaaccttttatttgtgttctgtATTGCTTCTGTCCTTCttgtactgtattgttattCCAAGGTGGcagcaaatacacattttagtgTTACTGTGACGAACAGTGACGactgcaaaatataaatgttctggGGAGAACTTCTTTATTAAATCTCATTGCATTCTTCATTTAAGGCAGACATTGTTTGCTAACTGTATTGTCCAAGTTAAAATACATTAgtgcatgtatgtatggatACTTAAAAaccataaaaggaaaaaaaaaaaactggtaaAGAACAGAAGATTTGTGCTGTAAGAGCTGTGTGGTCCATTTGTAACTGGAGTAAATACACCAGCTAGACCTTTTTCTGCAAATATAGTAAGGTCATAACTTTAATCCAAAAAaggttgttttggttttgtttattttattttaatttggactTCCAatctatataatgtatgtataaccTTTATTGtaaatcagtaaaaaaaaatgcatcatcaGTATCACATTtgcacaattaaacaataaattgCTATTAACCATACATTAGTTTcaacaatttacatttattttgcagcagtCTGGCTAATGTTTAAGTTATGTGAATTACATGTTCTATATCCTAGAtgcataattgttttatatacatttagaaTCGTATATATGTTGAAAAATGGCATATGTGTGAATGGCATATTCAAGGATTGGTTTAAAATTGGTTTATAATAACCATATTCTATTCAACATTATAGAGGGTAAGACTGATATAGTTTTTAGTAATTTGCACTTTACCTGTTGTTGTAGGAACAGCATTACTGATCTATGTATGGTTGATAATCAATTGAATCTGACTGGTAACAGCCTGCTCTTTAATACTTTGTCGGGAGAGATCTTGTTTGTAAAGGTAAAGGCTGGGTTAGCCGTTTGTTTAACCTTTTACTCTATTCTTGCATTTGTACAGTATCTTTCTTACCAACATTTACATCCAGAAATCTTCATGTAGAAACTTGTTTAGAGACCTTCAATAGCTAATCAGTGGTGTGGGCGTTACACctgtgtatgtataaataaattaatataaaagttGATATAGTGCAGTATCAACTCAAAGGGAAGACTCCTTACACAATATAGCTAATACACTGGCCCAAGAGAGATGACAACTGCACTCCTGTGTCCTGGAAAACACGTTTAATTTCAgagtgcaaggcaggaatacaagCCGCAGAACCATGGTATTGACAGATCCACAGTCCCGTGGGTACCAAACCATGAGTGTTTCTGCTGCCTGGTAAGCAGAGCATATTCCAACAACTCTATTGTTGCTTGTTCATTTTTACTTTGGACTGGAGCTGGTAGTCCACTCATACCATAACTGCATGTCAGCAGCCTCCAGTGTAAAGAATATATCCTCCACTCTAAGCATGTTGTTTTACTGCCTGACTCACccaaaaataaagcttttattgATAGTTGAGAATTGCATTTGTGTGATAAAGTGTGTTTAGGACCCAATGTCATACATTTTAGAAGGCCACTCAGTCTGTGCtgtgatgaaatgtgcattAATGGTACCATGGGATTCAACTATTTAAATTGGGCTTGATTTGCTAATAAGCACAGTAAATTGCACATTAGACAGAAAAATATCAAGGTGACATTTGGATGATTTTTAACCCAGTGAATGTCCTGAAGGTGGCTGCTTAATCATCCCAGTTAATTTTGGGTTTTGCACATTATCTGTtcaaatatatgcaaattagAATCAATCCTAAAATGGATAATGTAGTTTGCTTAAATGTTCTActtatatttacaatacaattctGGCACTTGTTTATTGTTAAGGTATCTGTTGAAGAACCAAACAtcatttgcattgcttttctaACATTGATATTGGCCAGTAATAAGTTAAGCAAGATTATAATGGGTAACGGCACGATTTCATCTTCTGTACATGAAGATATTGCCTAGTCAGAGCAGCTGACCATCCGTTGCCTAGGAACTGACTTTTATTTGCAGGTCTAGttgggtg

Function

symbol description
vps35 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 35

GO: NA

KEGG:

id description
K18468 VPS35; vacuolar protein sorting-associated protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020447 True 4887 mRNA 0.42 17 20238327 20255216

Neighbor

gene id symbol gene type direction distance location
AMCG00020449 NA coding downstream 12050 20215104 ~ 20226277 (-)
AMCG00020453 NA coding downstream 531120 19706484 ~ 19707207 (-)
AMCG00020448 NA coding downstream 545652 19689373 ~ 19692675 (-)
AMCG00020450 LOC104957704 coding downstream 581561 19652823 ~ 19656766 (-)
AMCG00020456 NA coding downstream 591815 19645694 ~ 19646512 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding upstream 8079 20263295 ~ 20276469 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding upstream 64463 20319679 ~ 20327023 (-)
AMCG00020451 NA coding upstream 77471 20332687 ~ 20354695 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding upstream 107894 20363110 ~ 20366992 (-)
AMCG00020462 NA coding upstream 207988 20463204 ~ 20464258 (-)
G63257 NA non-coding downstream 602084 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1160569 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1801388 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1839596 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1879417 18357825 ~ 18358910 (-)
G63346 NA non-coding upstream 706 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 828046 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2127148 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2128301 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2160119 22415335 ~ 22419743 (-)
G62961 NA other downstream 2198367 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2222465 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2612138 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3420560 16794996 ~ 16817767 (-)
G62618 NA other downstream 3445160 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 33354 20288570 ~ 20299843 (-)
G63464 NA other upstream 1056986 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1875626 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2185576 22440792 ~ 22466767 (-)
G63679 NA other upstream 2288626 22543842 ~ 22544689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_12934742_12962957 DKFZP468J242, VPS35 coding CI01000026 null 12934742 ~ 12962957 (-)