AMCG00020448


Basic Information

Item Value
gene id AMCG00020448
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19689373 ~ 19692675 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020448
atggaaaaacgGGGACTCTACGGCGTCCTGTATTATCTGATGCTCAATGCGCCCctgttaatgtatgtaaatgCGACATTTACTGAAGTCCCCAAAGATGTGAGTGTCGGTGAGGGAGAAGATATTGAGATGCCTTGTGCCTTTCGGGCCACCGGATCCACGTCTTTCTCCCTGGAGATCCAGTGGTGGTATCTTAAGGAACCAGCTGCAAGGGAACTTGCACATGAACTGCAAATTAGTGCCCCTGCCAACAGAGCAAAGGTCACTCCCAGAGATGCCACGAAAATAAGTACTGTCCGGGTGCAAGGCAATGACATCTCTCACAGGCTGCGGCTCTCCAATGTCAAGAAGGTGGACGAGGGGGTCTATGAGTGCCGGGTATCGGGCAACAGTGGCGACGAGACTCAGGAGCACAAAGCCCAGGCCACGCTGCGGGTCATCCCCCGCGACGGCATGGTGGCGGAGGAGGCTGTCTCTCATATTCAGAACCGATGGCCCCTTAGGAGCAATCCATCCAGCAGAGCGACTTCTGAGCCCGGCCAGGGCAAGCGCCGTGTGCCGCCCCCGGTAGGAGCTGGTCCGATCTCTGCCTCGACAACAACCGCAGCTGCAACGTCCTCAGCTTCGCCCCAGCCCGGCAATGCGGCCATCCTCCGGCAGGAGCACACGACT

Function

GO:

id name namespace
GO:0050803 regulation of synapse structure or activity biological_process

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020448 True 672 mRNA 0.57 4 19689373 19692675

Neighbor

gene id symbol gene type direction distance location
AMCG00020450 LOC104957704 coding downstream 32607 19652823 ~ 19656766 (-)
AMCG00020456 NA coding downstream 42861 19645694 ~ 19646512 (-)
AMCG00020457 NA coding downstream 63237 19623185 ~ 19626136 (-)
AMCG00020455 NA coding downstream 82464 19600942 ~ 19606909 (-)
AMCG00020441 NA coding downstream 92677 19590667 ~ 19596696 (-)
AMCG00020453 NA coding upstream 13809 19706484 ~ 19707207 (-)
AMCG00020449 NA coding upstream 522429 20215104 ~ 20226277 (-)
AMCG00020447 vps35 coding upstream 545652 20238327 ~ 20255216 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding upstream 570620 20263295 ~ 20276469 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding upstream 627004 20319679 ~ 20327023 (-)
G63257 NA non-coding downstream 53130 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 611615 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1252434 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1290642 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1330463 18357825 ~ 18358910 (-)
G63346 NA non-coding upstream 563247 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 1390587 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2689689 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2690842 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2722660 22415335 ~ 22419743 (-)
G62961 NA other downstream 1649413 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 1673511 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2063184 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 2871606 16794996 ~ 16817767 (-)
G62618 NA other downstream 2896206 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 595895 20288570 ~ 20299843 (-)
G63464 NA other upstream 1619527 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 2438167 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2748117 22440792 ~ 22466767 (-)
G63679 NA other upstream 2851167 22543842 ~ 22544689 (-)

Expression


Co-expression Network