AMCG00020449


Basic Information

Item Value
gene id AMCG00020449
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20215104 ~ 20226277 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020449
CAGCTTTATAACGTTACACTTACACcgtggaaaaaaagaaataacttAAAACAACTCCTATTGCGGCCGAAGGGCTCGTTTGTGTGAGAATGGAGCACAGTGACGATTCAGAGAGACAGTATGTCAACAGCGACGAAGGACGGGCGGCGACTCTATCGACTGATGATGTTcaacaaatggaagaaaatgttaatttggacACGGAGATGGGAATGGAAGTAAATGGAAACGATGAAATACACGGGGAAGTTGCTGCTTTGAAGCAAGGTCTGGGTCCAGTTGACCAGGGCGGGGACGAGGAGGCCGATGACGGCAGCAGCGACTACGGCAGCAGCGACAGGCCGGGCACACACCTGCAGAGAGCGGCGCGCCGCGGCGACGTGGCCTTCCCCGACACCTTCCAGACCACGCAGCTGCTGTTTTACGAGAGGTTCAAGGCCTATCAAGATTACATGTTAGGTGATTGTAAAACTTCAGAGGTAACAGATTTCACTGCAGACTATCTGGAGAAAGTGTTGGAGCCCTGTGGCTGGCAGGCTGTTTGGTGTACAGAGGTGTTTGATGTGCTGGTTGAGGTAGTTGATGTGGAGTGTGCCAGCTTGAAAGCCAGAGTGGATCTGGTTCTGCCGCTCCTGTGCGAGAGGAAGGGCTGTGAACTCACAGACGAGTCTATGAGGGACCTGTTGGAGGCGAAGGAACATAAAGTGCCTCTGCAGGAGCTCCACGTTGTGTTCGATGAATCGGGGGAATTTGACCAAACTGCGCTTGCAATAGAGCACTTAAGGTTTTTCTTCAAACATATCTGGAGGAAATGGGATGAAgaggatgaagatgatgattttGATTACTTTGTCAGATGCGTTGAGCCAAGATTAAGGCTCTATTACGATATCCTTGAAGACCGCGTGCCGACGGGCTTGGTTGCGGAGTATCATAGTTTGCTCTTGAAATGTGAAGAAAAGTACCAGGAATTCATGAGGCTGAGAAACACCATTAACAGCGACTCGGAGTCAGAACTTGACAATGTTTCAATGGTGGAGGGACTCAGGATGTACGAGGAGATGGAGGGCTTGAAACGTAAACTGAAGATTATTGAGAATCCACTTCTCAGGTATGTGCTGGGTTACAAAGTAAACTCGGGCCTGCAGTCCTGTAGGGCAAAGGGGCCTCGCCCGGGAGGGGAGAGGATCGTACATGTCGTATCTGTCTCCATGACGGTCAGCCAGCTGCAGAacctaatgaaaaacaaactgagtCCAGATTTTTCTGGAGAAGAGTATGAGTTGCAGTTTCACAGTGATCCTCTGGCAGCAGTAAATGCCTGCTATGAAGGTGATGTGGTCCTCATCTGCCCAGGCCATTACTCTGTGAATGGTTCATTTAGTATTCCAGACTCCATTGAGGTGGAAGGATTTGGCTTAACTGATGATGTTGTGATTGAAAAGAAGGGCAAAGGAGATACCTTTGTTGATTCAACAGGTGCCAGTGTGAAGATTTCAAACCTGAAGTTTATCCAGCATGATGCAATTGAGGGCATcttatGTGTTAGACAAGGAAAAACCCTCATGGAAAACTGCGTCTTCCAGTGTGAAACTACTGGTGTTATAGGCGCTGGCATAGAGATCTATCCTGGTAGTACCTGCAGTCTGGTTGGGAATGGTATTCATCATTGCAAGGAAGGAATACTAATCAAGGACTTCACTGATGAATTATATACCATGCCCAAAATTACTATGGTCAACAATGTCATTCACAACAATGAAGGCTATGGGGTCATCCTGGTTAAGCCCAACGATCTGACTCGAGTGAAGAAAACCATGGAAGCGGAATTTGAAgATGAGTTGGAGCATAATGACAAAGGGCAAAAGGAGGAATTGCAAGCAAGTATGAAGACTGAAATTCCCATTATACAGGTGGAGGGATGTTTAGCAGATGaaaatgcacagacagacaagcCAGGTCTCCCCGAGTTCACCGAGGGCaatgatgtaattaaaaatgaactggTGGCCacatctgccaagaaaaggcAGTTACAGAAGAATAAGATGACTGACCTGGGAATCACACAGGCAGATGAGAATTTGATGTCCCAGGACATGTTTGTCTCCATTGAGGGAAATCACTTCAGACGAAACGGCAAAGGAAGTTTTGGcacttttttgtattgaattttgAGGCCCGGATCTGCGATGAAAGCACACTACAAACTTTGCACgcgtctttaaaaaaaaaaaaaaactctacaaAAGTTTgcagattgttgtttttttcttgaagaAAACTGGGCTGCCGTAACATCACTATCTGTTgaatcattgtttttaaacacattttaaaaatgtagctgCTCTTTTTAATCACTTTATAAGATAATGACTTTGAGTAGGAGTTTTTTCTAGAAAATGACTGACAGAATAGCATAATCAGATTCCTActagtcttttatttttcaccctttaatatatattgtttgtatacaTCTATTAATGATGAACTGTAACTGTTTGCATATGGTttgctgaaattattttttaaaaagcttaaatATTCTTTAGCTCTGGGTGGGAGGGTTGgttattcacatttaaatatcgagttcataattcatgtttttgaggTGGGGGAAGTTTGTGTTGGATTGTGTGcacattcaaaaataactttgttGAAGCTACAAGTTGaaaccattttgaaataaaatttgAGTTAATG

Function

GO:

id name namespace
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020449 True 2715 mRNA 0.44 13 20215104 20226277

Neighbor

gene id symbol gene type direction distance location
AMCG00020453 NA coding downstream 507897 19706484 ~ 19707207 (-)
AMCG00020448 NA coding downstream 522429 19689373 ~ 19692675 (-)
AMCG00020450 LOC104957704 coding downstream 558338 19652823 ~ 19656766 (-)
AMCG00020456 NA coding downstream 568592 19645694 ~ 19646512 (-)
AMCG00020457 NA coding downstream 588968 19623185 ~ 19626136 (-)
AMCG00020447 vps35 coding upstream 12050 20238327 ~ 20255216 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding upstream 37018 20263295 ~ 20276469 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding upstream 93402 20319679 ~ 20327023 (-)
AMCG00020451 NA coding upstream 106410 20332687 ~ 20354695 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding upstream 136833 20363110 ~ 20366992 (-)
G63257 NA non-coding downstream 578861 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1137346 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1778165 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1816373 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1856194 18357825 ~ 18358910 (-)
G63346 NA non-coding upstream 29645 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 856985 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2156087 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2157240 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2189058 22415335 ~ 22419743 (-)
G62961 NA other downstream 2175144 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2199242 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2588915 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3397337 16794996 ~ 16817767 (-)
G62618 NA other downstream 3421937 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 62293 20288570 ~ 20299843 (-)
G63464 NA other upstream 1085925 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1904565 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2214515 22440792 ~ 22466767 (-)
G63679 NA other upstream 2317565 22543842 ~ 22544689 (-)

Expression


Co-expression Network