AMCG00020450 (LOC104957704)


Basic Information

Item Value
gene id AMCG00020450
gene name LOC104957704
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19652823 ~ 19656766 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020450
CTTCCATGGTTGTGATCCGGTTTTCTGTAGTAGTGTGAGTTATATGGATAGATTGCACAATCAACTGTTTGCACTGTATTtcagtaaataatttaaatgttttaaattaaataacatacaaGCAAATCTGGTAATATATTGCCTATACACTATATGTGTAGTGTTTATATGCATATGAGAGAGAAATACGTTTTGCTTTCTAAAATTCTTGTCAGTGAggcattttaaatctgtatattGGTAGATAGACAAAAGCCACACAAGCTACTATTTGCCTTCACCAGCATAATGGCTTGCTAATGGATTTATCCGGATGATTTAACACTCCTTAAAAGCGATTTATCGTTTCTCTACTGCTCTGGTCTGTAGTACGTAACTGCGTGGCGGAAGTCTTTCCCGCAAGCACGTTGTGTGGAGTAACTTTACGTGTTTAGTGGCTGAAGTAAAGGGGCGAATAAAGCAATGGAGCGTTTAATACAATCCGGTTTACCAGAGGATCAGGCTCATATTCTGGAAATCCAGTCTCAGGATGTCAATCAGGCACAAGCCTTCACGGatgcttttctgaaaaacaGCATGCCGCTCAAACAAGAGgaaatccagcaggttttggttCACAAGGCGGTAGTACTTGAATATTTCgtcaagaaaacacagaagaaaaagatgAAGAAGGCAAAGGGTCTCAATGCCAAGCAGAGAAGGCAAATGAAGATATTTGATCTAAGGCCAGAGCAACAGAAcaatCCTCAGATGATACAGAATAAGTTACTAAAGGCAGATTTCCACGGTGCTATTATTACAgtGGTCAAATCTAAATGTCCATCTTATGTGGGCACAACAGGAATCCTTTTACAAGAACTGAAGCATGTGTTCAAAATTATTACTCAAGAGGACAAAGTAAAAGTTATCCCAAAGCGCAACAGTGTGTTCAGCGTGGAAATTGATGGTTTTGTGTCCCATATCTATGGCAGTAAGTTCCAGCTCAGATCAAGCGAGCGCTCTGCGAAGAAATTTAAAGTGAAAGGAACCATAGACCTTTAATTAAGAGCCAATGTAGCTGAAGAAGCTCCTTCAGAAACATCACCAGTTGCTCCACAGAGACTAATGGGAAGAGTTTTGCAGCTGCCAGATAGGATATAAAAGGAGTTCAGCTTCTCGGAAAAGCCTATTGATTAGCTCGTCTCTGGAGAAAcatcttcttttcctttttttttatatagaaagTCATTCAGTTCCtttatgcttttaatttctcCAGTTTAATGCTAATCAGATTATATCTAACGAGGATGCATTGGCAAATAGGCATTACTGTTCAGACCATTTAAATTAACTCTGcctctttcaaaatgtactgGCGCAGGGGTTTTGAGAAAAAACGTGAACTGCTTGTAAGTAGTTAAGTAGGTCACGTGAAATCTGACCATTAGATCTGGATTGATTTATGTCGTATCCTGCTCTAATGTTTTGAACTctttacttgtgtgtgtgtgtgtgtgtaaatattattttttggaagaggtttatattttactgtttacAATCACTTCCTTGGTTGttcagttacaaaataaaagtgtaacaATCCACAATGATCCTAAGGAGAGACCTGTTCTAAGGAGTCTTACATGTCAGAATGCTTATAAAACttgaaaaactgtaattttgtttttaataaaaatgcttaCTACTCAATAGTAAAGTATTCCAGCTTTTCTCATTTACAGAATgtacacagcaaaatctgtagttttgaaatcccagtgttaacaatatagtgttaaaatcagtgttgtttcaacactaaaaagattcagttgacactttgagagttaaaccatcttgagagtcagtgttaataccgggtgtcaaattaaagagtgttgattttacactgtactggtgtaaaaccaaagaatttaccatacccacaatgcattgtggtagtttcctgaataattgtttttttatggttttattttttttcttaataattgtataaataaatgttaatgttaatgattgtacattaattattgtttgagggtaaaatgtacccaccaatgtatttatatttgtgttg

Function

NR:

description
PREDICTED: ribonuclease P protein subunit p29-like

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0030677 ribonuclease P complex cellular_component

KEGG:

id description
K03538 POP4, RPP29; ribonuclease P protein subunit POP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020450 True 2086 mRNA 0.36 6 19652823 19656766

Neighbor

gene id symbol gene type direction distance location
AMCG00020456 NA coding downstream 6311 19645694 ~ 19646512 (-)
AMCG00020457 NA coding downstream 26687 19623185 ~ 19626136 (-)
AMCG00020455 NA coding downstream 45914 19600942 ~ 19606909 (-)
AMCG00020441 NA coding downstream 56127 19590667 ~ 19596696 (-)
AMCG00020440 NA coding downstream 81983 19552958 ~ 19570840 (-)
AMCG00020448 NA coding upstream 32607 19689373 ~ 19692675 (-)
AMCG00020453 NA coding upstream 49718 19706484 ~ 19707207 (-)
AMCG00020449 NA coding upstream 558338 20215104 ~ 20226277 (-)
AMCG00020447 vps35 coding upstream 581561 20238327 ~ 20255216 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding upstream 606529 20263295 ~ 20276469 (-)
G63257 NA non-coding downstream 16580 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 575065 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1215884 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1254092 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1293913 18357825 ~ 18358910 (-)
G63346 NA non-coding upstream 599156 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 1426496 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2725598 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2726751 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2758569 22415335 ~ 22419743 (-)
G62961 NA other downstream 1612863 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 1636961 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2026634 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 2835056 16794996 ~ 16817767 (-)
G62618 NA other downstream 2859656 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 631804 20288570 ~ 20299843 (-)
G63464 NA other upstream 1655436 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 2474076 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2784026 22440792 ~ 22466767 (-)
G63679 NA other upstream 2887076 22543842 ~ 22544689 (-)

Expression


Co-expression Network