AMCG00020452 (dnaja2,LOC100286703,LOC106524269)


Basic Information

Item Value
gene id AMCG00020452
gene name dnaja2,LOC100286703,LOC106524269
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20319679 ~ 20327023 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020452
TGCGTGTGACGTTTCCGGCCGgctcctctttctctcctccgCTTCCCTGGCAGAAGGTCCTTCTCCGAGCTCCATCATGGCGAACGTCGCTGATACTAAACTGTACGACATCCTCGGGGTGCCCCCCAACGCGTCTGAAAACGAGCTGAAAAAGGCCTACCGCAAGTTGGCAAAGGAATACCATCCTGACAAGAATCCAAATGCTGGCGATAAGttCAAGGAAATAAGCTTTGCTTATGAAGTCCTGTCCAACCCAGAGAAGAGAGAGCTGTACGATCGATATGGGGAGCAGGGTCTGCGGGaaggtggtggaggaggtgggggaatGGACGATATATTCTCCCACATTTTTGGAGGGGGGCTGTTTGGGTTCATGGGTGGACAAAGCAGGAACCGAAATGGAAGACGAAGAGGTGAAGATATGGTTCATCCTCTTAACTGTAAATGGAAGATGTATTCCTGCATTGGTGCTGCAAAGATTGATATTGGGAAGACGTATAGACGAGAGGCAAACGACTTGCACATGACCCATAAGATCGGCCTTGTTGAAGCACTTTGTGGATTCCAGTTCACATTGAAACACTTAGATGGAAGACAGATTGTTGTCAAGTACCCTCCAGGAAAAGTTATTGAGCCAGgTTCAGTCCGGGTAGTGCGAGGTGAAGGAATGCCACAATATCGTAACCCATTTGAGAAAGGAGATCTGTATATTAAATTTGATGTACAGTTCCCAGACAATAATTGGATCAGCCCAGAAAAACTGAcgGAACTTGAGGACTTGCTTCCAGCAAGAGCAGAAGCCCCAAATGTCTGTGGAGAAGCAGAAGAGGTTGATCTTCAGGATTATGACACCAGTCATGGTTCAGCAGGAGGACACAGGCGTGAAGCCTACAATGATAGCTCTGATGACGAGAGTGGGCATCATGGTCCAGGGGTGCAGTGTGCTCACCAGTAAACACTTGAGAAAAATAAGTTGCACGAAAAAGAGGGTGGTTCAGATTTTGATTGGGTTGGAATTGAAATGAGTTCATGAACAATCCAGATTGGATCAACAAGTAATTTCTTTTTGCTCTaagtgtaactttttttttgtcatagtATTTACAGAGTTAATATAAACTTAACATACAAGCAGAAGTTTTGCTCAAACTCAGAACTTTGTCACAGAGGTCTGAGTAGGGGAGAGAAATCCTAAGATAAGACATTCACCACCACATTTTTAGgtttgtctgtatttgtatctgtgctttttctttttttacattgttttctttgtagatttctttctatatattttaaatttggggagggggggaacaACTTGTGTATGAACAGAAACTATTAAGCTTTATATTGGCTGCAGTCACATAAGCTGCTAGTAAATCGAATAAACAATTTCATAGCTTGTATCTGTCCTTATCCCAGGTGCATGTTAGAAAGAATTGGTTTTCTGCACTGATAAAGTATCATTAAATGAGTGAAGCCATTAAGAGATATAGGGGGAATCCAGATGTAGGAATTTTACTTCTGTGAAAGGTTTCTGAAgttgttaaataaaatctttaaaatcttTGAGCAATACAGCATGTTATTTGAGTAGTCTGTTTGCCCATGGTGCAAGGTACAAAAACATCCATGTTCTGTAGACTATCTAAGCCTTGCCAGTAATGGCTTTTCAAATCTAAAGTGTATCTATTCCAAAATTAGCATGGCTCTCAAGCTGGCACTTCTAGCAGATATTAGTCATTACATCTAATTTGgtaataacaaaaggaaaataaaattgttggaatgtgttcccttttttttcttgtagaaATTGGAGGTAGtgccaaaatacatttcattggaAGCTCTATAGCAACTTTTTCTGATCTGCTAAGTGAGCTGTtgatagaaatgtgtttttcttcatatttgaAGTCTGGAAAACTTCTGAACAGGTGAATGTGTGTGAATTAACTAGATGGGATTATTCTGGGTATTATGACCATGAGGAAAGGTTAACACACTGGCTGTGAGAGGTGACCTTTCACGTGAACAAGAACTTTCCAGCATGGAGGTCAGTTTAAGACTCCTGTTAAGAGTCATGTGCAACCCAGTGACTCTAGATAATTTACTAATGTAATTATTCCTATTGTATTTAAGTTAAATTGAGCAGtttttgaaatagttttctGTTATGTATACAACTTCAAAATGCATAcaccaatttataaaatatacctTGTCCTGAAGGTATCCATTAATGTGTACTGCACTTGTCCTATATTATTTAATGCAAaagctttaaatattaattgccTAGATGCTTTCAATGTCACCTTCCTAGAGATTAGGAATGGTTTTAAACcttataaatgtaatgtggCGTTTCCTTTCCCCACAAGAACAGATCACTTTGTGGCAGAGTTACTGAATTTATCAGCACTTGGACAGACCCTAGTGTAAAGGATTACATTAACCTGAAAATGATTGCAGACTATATTCTGCATTTATCCAAACTTTAGAAGCCTGTTCTGTAGAACATGATCTTGTAATTGATCTAAATTTTCAGTGTTGATGCACatgtttgttcatgtttacttgtacaataaaataaatctgtgacaTGTTGAC

Function

symbol description
dnaja2 Enables ATPase activator activity; chaperone binding activity; and unfolded protein binding activity. Involved in protein refolding. Located in cytosol.

NR:

description
PREDICTED: dnaJ homolog subfamily A member 2

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020452 True 2619 mRNA 0.39 7 20319679 20327023

Neighbor

gene id symbol gene type direction distance location
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding downstream 43210 20263295 ~ 20276469 (-)
AMCG00020447 vps35 coding downstream 64463 20238327 ~ 20255216 (-)
AMCG00020449 NA coding downstream 93402 20215104 ~ 20226277 (-)
AMCG00020453 NA coding downstream 612472 19706484 ~ 19707207 (-)
AMCG00020448 NA coding downstream 627004 19689373 ~ 19692675 (-)
AMCG00020451 NA coding upstream 5664 20332687 ~ 20354695 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding upstream 36087 20363110 ~ 20366992 (-)
AMCG00020462 NA coding upstream 136181 20463204 ~ 20464258 (-)
AMCG00020464 NA coding upstream 214495 20541518 ~ 20559873 (-)
AMCG00020465 cdh8,LOC106561990 coding upstream 781963 21108986 ~ 21132111 (-)
G63346 NA non-coding downstream 63280 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 683436 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1241921 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1882740 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1920948 18397467 ~ 18398731 (-)
G63447 NA non-coding upstream 756239 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2055341 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2056494 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2088312 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 2218745 22545768 ~ 22546057 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 19836 20288570 ~ 20299843 (-)
G62961 NA other downstream 2279719 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2303817 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2693490 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3501912 16794996 ~ 16817767 (-)
G63464 NA other upstream 985179 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1803819 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2113769 22440792 ~ 22466767 (-)
G63679 NA other upstream 2216819 22543842 ~ 22544689 (-)
G63819 NA other upstream 2827669 23154692 ~ 23161900 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_13033698_13034704 NA coding CI01000026 null 13033625 ~ 13035620 (-)