AMCG00020455


Basic Information

Item Value
gene id AMCG00020455
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19600942 ~ 19606909 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020455
ATGGCCAGGACAGACCCGCTATCTGCCGAAAAGAAAGATCCACTGGAGCAACCAGAGATCAACCCCTTGGAGAACCTACTGATTGAGCATCCTAGTATGTCGGTGTACAACCTGAGAGACTGGGGAAGTGATGAAGAGGACCTGAACTCtgaggaggaagatgaagatTCATCAAGACTTGTCCAGGTGGGACGTTTCATTCCGTGGCGGTTGAGCATGTGGGAAGTTTCTGTGGAGAAAGACAGTCCCCTGCACTGTATCCGCAGGGCCAGGCAGCACAGTGAGCACAGGAAGCTGAGCCGCGGTCACCTCTGCAGGCAGAATCGCTGCAAGAAGCGCTACTCTCCAAGAGAGAAGCACTACGGCTGCTTCAAGCAACCCTGCCAACGCATTTATAACTACTGAGAACTGGAGCTGGGAGAGAAATTGGGGATTTAGATGAGACGGCAATGtataattgatttgtttataaatgcatataaaccTGTATATTTTCAACAAAAGTCATAAATCATGTTCATACTTTCTGTATTCCAAGGTACAGTGTAATTtgcctgttttgtgtttgaactAATGCAAAATATACTGTACCATCTGTACAGTTTCATAACTACTTGATATTACTGACAAGCTTAGAGAACACATGGCCACTAAGAACTAAAAccagaaaaaattataaatattcagtgttgactctctctatctatacacaataaatatatatatatatatatatatatatatatatatataaacttattttattattacatgtgAAAACGAAACTACACCTATAGAATCATATAAATTGCTACCTAACTTGCATGTACAACCTGTTTTAGGAAATTACTTGATAAAGAATGACAGTGCTGCCTACAGGTGGTATTGTAACAGGTAACATGTTTCAGTGTTGTAGTTGACTACAACTGGCTGAACTTgtcttattttccatttcagtggTCTCTTGACTACAAGAAGAAATCCAAAGTGcctaatacattaaataattaggaATAGTCTCATCACGGAATATTGGGAATGCTAATTGTACACATTGAGCATAGCACATATTTAACACGATTTTAGATGCAGGAACAAAACTTCTCTGCACACTTTTCTATCAGTATAAAATGGCGAATGGAATTGTGCTCGGCAGCAAACGCAGGACTCACTACAtcactttcattttgatttacattttcaccACAGTCAGGAACTCAAGTGATATGCACCTCAAAGGAATTACAGATCATtttgacaattatttttaaatgtcacaatgcaAGACACAATTAAATTCAACTGAAAGAAGATTGTGTGCACAACTATAGTGTACCAGCTGTATCATAAAAATTACAACAGGTATTGCACAGATatgatttgtgcattttaaaactgcaaattaaGGCTTTCAACTTTGccaattgttttaatctgttacACACTAGCATTATGAGGATTTATGAAAATTAAAGAAGACCTGCATATTcccatatatttatacatttaaagtcCTGTAATTCATAGTACTGAAAAAACATCCCTTTAGGTTGGTTTTTTTCTAAGCAAAACTTTATACTGTTTAGTTTTGACATGGGAGTACCCTTCAGAATAGTTTTGGTTCATTCTAGTACCATTTATCAGTTGTTTTTCGAGCTGAAGACCATTCTACATTACAATACTGTAGGTTTggtatataacaaaataatatatatctatacttAAAAGTAGATGTACAGGTGTGTTTCTTCTTTGGGACATAATTGTTCAAATGTAGCTGTATTCACATATAGAAAACCTTGATATGTTGCTGCAcgtgtaatattatttttgttcttcagCTGTTAGCGTGCAATCATTGCTGTACTATTAGATAGTACAGACAGACTGTCAagagtgcatgtgttttgcCTGAATTTGCTGTTAGGAATATGAATGGAAGAGAAAGCTTTCACTTGTGACATTGtggttatttagtttttttattctattacaatagcactgtattttaaatggatgtTACTTAAATGTGTTGTTCTACTATATTTATAGACTCCAAAATcagtttgtaaaaatgttaacaatactttttttagcATAGAATGGGGGTGGTATAAAAATTTTGAgtactatacaaataaatcactttttgttaaaaaaaaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020455 True 2163 mRNA 0.35 3 19600942 19606909

Neighbor

gene id symbol gene type direction distance location
AMCG00020441 NA coding downstream 4246 19590667 ~ 19596696 (-)
AMCG00020440 NA coding downstream 30102 19552958 ~ 19570840 (-)
AMCG00020435 LOC107556245,LOC106562015 coding downstream 162505 19323395 ~ 19438437 (-)
AMCG00020437 NA coding downstream 284797 19314795 ~ 19316145 (-)
AMCG00020433 NA coding downstream 685431 18908978 ~ 18915511 (-)
AMCG00020457 NA coding upstream 16276 19623185 ~ 19626136 (-)
AMCG00020456 NA coding upstream 38785 19645694 ~ 19646512 (-)
AMCG00020450 LOC104957704 coding upstream 45914 19652823 ~ 19656766 (-)
AMCG00020448 NA coding upstream 82464 19689373 ~ 19692675 (-)
AMCG00020453 NA coding upstream 99575 19706484 ~ 19707207 (-)
G63180 NA non-coding downstream 523184 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1164003 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1202211 18397467 ~ 18398731 (-)
G63057 NA non-coding downstream 1242032 18357825 ~ 18358910 (-)
G63015 NA non-coding downstream 1414892 18184008 ~ 18186050 (-)
G63257 NA non-coding upstream 27385 19634294 ~ 19636243 (-)
G63346 NA non-coding upstream 649013 20255922 ~ 20256399 (-)
G63447 NA non-coding upstream 1476353 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2775455 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2776608 22383517 ~ 22391215 (-)
G62961 NA other downstream 1560982 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 1585080 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 1974753 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 2783175 16794996 ~ 16817767 (-)
G62618 NA other downstream 2807775 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 681661 20288570 ~ 20299843 (-)
G63464 NA other upstream 1705293 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 2523933 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2833883 22440792 ~ 22466767 (-)
G63679 NA other upstream 2936933 22543842 ~ 22544689 (-)

Expression


Co-expression Network