AMCG00020458 (phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686)


Basic Information

Item Value
gene id AMCG00020458
gene name phkb,LOC107591034,LOC107723134,LOC107757780,LOC107598686
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20467388 ~ 20489997 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020458
TCTGTCTATGAACCCTTGAAGAGCATTAACCTTCCTCGGTCAGGTGATGAGACTCTATGGGACAAATTGGACAGATACTACAGTGCAGTTAAATCAACAATATTAAACTACCAGAGTCCCACCACTGGTTTGTTTCCCATCAAGACCTTGGGTGAATGCAATGAAGCCAAAGTCCGGGACAGCCTGTATTGTGCTGCGAGCGCCTGGGCTCTTGCCCTTGCATACAGGCGCATTGATGATGACAAGGGACGGACTCATGAGCTGGAGCACTCCGCTATAAAATGTATGAGAGGGATTCTCTACTGCTACATGCGCCAGGCAGATAAGGTAGAACAGTTCAAGCAAGATCCAAGTCCTTCAAAATGCCCGCATGCAGCATTCAATGTGCATACAGGAGATGAAGTATTTTCTTATGATGCATACTGTCACCTGCAGattgatGCTCTGTCTCTGTTCCTGCTATATCTTGTGGAGATGATCTGTTCTGGGCTGCAGATTATCTACAATACAGATGAGGTGGCATTTATTCAGAATCTGGTGTTCTGTGTGGAAAGAGCTTATCGTGTTCCTGATTTTGGAATGTGGGAGAGAGGAAGTAAATACAACAATGGGAGTACTGAGCTTCATTCAAGTTCTGTGGGCCTGGCCAAAGCAGCTCTTGAAGCTATTAATGGATTCAACCTTTTTGGAAATCAGGGCTGTTCTTGGTCTGTCATTTTTGTAGATCTTGATGCTCATAACAGAAATCGTCAGACATTGTGTTCCCTGCTCCCAAGAGAATCAAGATCTCATaatACAGATTCTGCCCTCCTGCCCTGTATCAGTTACCCTGCATTTGCAGTGGATGATGACGCATTATATAATCAGGCCCTAGACAAAATCGTGcgaaaactgaaaggaaaatatggaTTCAAACGCTTTCTGAGAGATGGGTACAGAACATCCCCTGAAGATAAAAACAGGAGGTACTACAAGCCAGCAGAAATCAAGcactTTGATGGAATTGAGTGCGAGtttccattgtttttcatttacatgaTAATTGATGGTGTTTTCAGAGGAAATTCTAAGCAAGTAAAGGAATACAATGAATTACTGGATTCAGTGATTTTTCAGTCTATATATTCCCCAAATATCCCCACAGGGCACGCCATTATCCCAAAGTATTACTATGTGCCGGCTGACTTTGTGGAGGGCGAGCAGAGGAACCACGGGAGCCAAAAGCGCTTTCCTAGTAACAGTGGACATGATGGGAAACTCTTCCTTTGGGGGCAGGCCCTCTATAACATTGCAAAACTGCTTGTGGATGGCCTAATTAGCCCCAGAGACATTGACCCTGTGCGCCGCTATGTGCCCCCAGAGGACCAGAGGAACGTCAGCATGAGATACTCCAATCAGGCAAGTCTTTATCACATCCACTGTGTGGCCAGTCCCTGCCTTGCTGGCcatgaaagaaagaatgaaaggcCAAACAAATACAGCTTTCAGGGGAGCTCAGGAGCTTTATTTGGGTTTTGTTCAGTCTTTGAG

Function

symbol description
phkb Predicted to enable calmodulin binding activity. Predicted to act upstream of or within glycogen metabolic process. Predicted to be located in plasma membrane. Predicted to be part of phosphorylase kinase complex. Human ortholog(s) of this gene implicated in glycogen storage disease IXb. Orthologous to human PHKB (phosphorylase kinase regulatory subunit beta).

NR:

description
PREDICTED: phosphorylase b kinase regulatory subunit beta-like isoform X1

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process
GO:0005516 calmodulin binding molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020458 True 1530 mRNA 0.45 13 20467388 20489997

Neighbor

gene id symbol gene type direction distance location
AMCG00020444 NA coding upstream 156699 20300013 ~ 20310689 (+)
AMCG00020445 NA coding upstream 206727 20255777 ~ 20260661 (+)
AMCG00020443 NA coding upstream 229747 20235596 ~ 20237641 (+)
AMCG00020442 LOC106562006,LOC107565776,LOC105924362,LOC107741896 coding upstream 635309 19826809 ~ 19832079 (+)
AMCG00020436 tshz3,LOC107696607 coding upstream 1294003 19169312 ~ 19173385 (+)
AMCG00020459 phkb coding downstream 11494 20501491 ~ 20526222 (+)
AMCG00020460 NA coding downstream 144869 20634866 ~ 20658252 (+)
AMCG00020461 NA coding downstream 171676 20661673 ~ 20672190 (+)
AMCG00020468 NA coding downstream 1541128 22031125 ~ 22047368 (+)
AMCG00020469 LOC106587286,LOC106561986,LOC107704827,LOC107681497 coding downstream 1604321 22094318 ~ 22097040 (+)
G63360 NA non-coding upstream 154116 20311699 ~ 20313272 (+)
G63334 vps35,LOC107659455,LOC107598694 non-coding upstream 215431 20248832 ~ 20251957 (+)
G63328 NA non-coding upstream 226462 20238830 ~ 20240926 (+)
G63318 NA non-coding upstream 269961 20197177 ~ 20197427 (+)
G63313 NA non-coding upstream 599106 19867785 ~ 19868282 (+)
G63433 NA non-coding downstream 73820 20563817 ~ 20580433 (+)
G63448 NA non-coding downstream 594120 21084117 ~ 21084538 (+)
G63477 NA non-coding downstream 1148999 21638996 ~ 21639656 (+)
G63562 NA non-coding downstream 1717711 22207708 ~ 22208031 (+)
G63564 NA non-coding downstream 1862176 22352173 ~ 22382491 (+)
AMCG00020438 NA other upstream 831167 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 865064 19597203 ~ 19602324 (+)
G63045 NA other upstream 2133356 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 2395337 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 2401599 18058558 ~ 18065789 (+)
AMCG00020470 NA other downstream 1645371 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 1866177 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 2563801 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 2580414 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 3543040 24033037 ~ 24068457 (+)

Expression


Co-expression Network