AMCG00020462


Basic Information

Item Value
gene id AMCG00020462
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20463204 ~ 20464258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020462
atgatattTCTCTCCGGGAATGGGGTTGCCCTAGCCCTCCAGGATGTGACAACGGACTTATTCGGCTCTGAATGTTATGGCACAGTCGCTGCTTTCGGAGATTTCAACTCGGACAAGCAAACGGATCTCTTCATCATCAGACaatCAGATCTGATTATATTCCTAGCAGATTTAAAAGCACCTTACTTCAAGCCAAGAGTGAAGGTGTCGTTAGAAGGGGGCTCTGTCATCAGCAGTGTGGTTCCTGGAGACTACGATGGAGATTCACAGATGGATGTCCTTCTCACAACTCGCACAGATGTAGAGACGTCAGTTTATGTCTACTGGGGAAATAATCAAACTCTA

Function

GO:

id name namespace
GO:0044448 obsolete cell cortex part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0031105 septin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020462 True 345 mRNA 0.46 3 20463204 20464258

Neighbor

gene id symbol gene type direction distance location
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding downstream 96212 20363110 ~ 20366992 (-)
AMCG00020451 NA coding downstream 108509 20332687 ~ 20354695 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding downstream 136181 20319679 ~ 20327023 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding downstream 186735 20263295 ~ 20276469 (-)
AMCG00020447 vps35 coding downstream 207988 20238327 ~ 20255216 (-)
AMCG00020464 NA coding upstream 77260 20541518 ~ 20559873 (-)
AMCG00020465 cdh8,LOC106561990 coding upstream 644728 21108986 ~ 21132111 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding upstream 1176396 21640654 ~ 21659803 (-)
AMCG00020472 tk2,LOC106587284 coding upstream 1657411 22121669 ~ 22128173 (-)
AMCG00020478 LOC106561981 coding upstream 1681535 22145793 ~ 22164159 (-)
G63346 NA non-coding downstream 206805 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 826961 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1385446 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 2026265 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 2064473 18397467 ~ 18398731 (-)
G63447 NA non-coding upstream 619004 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 1918106 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 1919259 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 1951077 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 2081510 22545768 ~ 22546057 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 163361 20288570 ~ 20299843 (-)
G62961 NA other downstream 2423244 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2447342 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2837015 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3645437 16794996 ~ 16817767 (-)
G63464 NA other upstream 847944 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1666584 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 1976534 22440792 ~ 22466767 (-)
G63679 NA other upstream 2079584 22543842 ~ 22544689 (-)
G63819 NA other upstream 2690434 23154692 ~ 23161900 (-)

Expression


Co-expression Network