AMCG00020463 (itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136)


Basic Information

Item Value
gene id AMCG00020463
gene name itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20363110 ~ 20366992 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020463
GGACAGCTCAGTCAGTCAGCCCATCACGCTTTACAGCTGCCCTACACAGTGCTGGGATTGGGCCGCAGTGCCAACTTCTTGGATCATCTTTATGTTGGCATCCCTCGTCCTTCAGGAGAGAAGGATATACGCAAGCAAGAGTGGACGGCAATTATTCCCAACTCTCAGCTGATTGTCATTCCATACCCTCATGACAACCCTCGCAGcTGGAGTGCCAAACTTTACTTGACCCCCAGTAACATTGTGTTACTAACCGCCATTGCACTAATTGgagtgtgtgtatttatccTGGCTATAATTGGCATATTGCATTGGCAGGAAAAG

Function

symbol description
itfg1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1).

NR:

description
PREDICTED: T-cell immunomodulatory protein

GO: NA

KEGG:

id description
K17257 ITFG1; integrin alpha FG-GAP repeat containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020463 True 324 mRNA 0.48 3 20363110 20366992

Neighbor

gene id symbol gene type direction distance location
AMCG00020451 NA coding downstream 8415 20332687 ~ 20354695 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding downstream 36087 20319679 ~ 20327023 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding downstream 86641 20263295 ~ 20276469 (-)
AMCG00020447 vps35 coding downstream 107894 20238327 ~ 20255216 (-)
AMCG00020449 NA coding downstream 136833 20215104 ~ 20226277 (-)
AMCG00020462 NA coding upstream 96212 20463204 ~ 20464258 (-)
AMCG00020464 NA coding upstream 174526 20541518 ~ 20559873 (-)
AMCG00020465 cdh8,LOC106561990 coding upstream 741994 21108986 ~ 21132111 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding upstream 1273662 21640654 ~ 21659803 (-)
AMCG00020472 tk2,LOC106587284 coding upstream 1754677 22121669 ~ 22128173 (-)
G63346 NA non-coding downstream 106711 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 726867 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1285352 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 1926171 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 1964379 18397467 ~ 18398731 (-)
G63447 NA non-coding upstream 716270 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 2015372 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 2016525 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 2048343 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 2178776 22545768 ~ 22546057 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 63267 20288570 ~ 20299843 (-)
G62961 NA other downstream 2323150 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2347248 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2736921 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3545343 16794996 ~ 16817767 (-)
G63464 NA other upstream 945210 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1763850 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 2073800 22440792 ~ 22466767 (-)
G63679 NA other upstream 2176850 22543842 ~ 22544689 (-)
G63819 NA other upstream 2787700 23154692 ~ 23161900 (-)

Expression


Co-expression Network