AMCG00020464


Basic Information

Item Value
gene id AMCG00020464
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20541518 ~ 20559873 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020464
aaaaaTCCTTCCAATGTGTCTTTCTGACACGGCCCCCACTGGCAGGATAATGTGCAGGTTTATGAAGGCTCATGATGATTTACACCCCAGACTCCCACATCCTGCAGTGAGTTTACTAGAGCAGGTGaaaatgaaaccgGACAATACAACATGGGCTATGGAAAGAAATGGAATTGTGAATGCATCTTCAGAACACTTACCATCTTTGGATTACAAAGAATACGAAGATCTCTCAAAATGGCACAAGTATCACACAAGTATGCAACACCTGATTCCGTTCCGCTTCAGTTCAGAGTCTTCCACATCTAACCCTAAAGATGAAGCTGGTTTCTTTTCCTTTACTTCTTTTTCATGGCTCACTCCCCTTTTGTGGAGTGTGTTCAGAAAAAACATAGATGTGAACAATATCCCCTCTTTATCACCTCATGACTGCGCCGATGTTAATGCCAAAAGATTCCAGAGACTTTGGGAAGAAGAAGTTGCCCGAGTGGGTATGGAGAAGGCCTCGATTGAACGCGTGGCATTCCGTTTCCAGCGAACACGAATGATAATGGCTTTTTTGGCTTCTGTTGCTTTCACTACTGCTGTCTTCCTAGGACCTtctgTTCTGGTGTACAGCATTCTTCAGTATATTGAATCTTCTGAGTCGAATCTCTTATATGGAATTGGGCTTTGTGCGGCTCTGTTTGTGTCTGAGTTCTGCAAAGCATTTTTTCAGTCCCTGACCTGGGCTATCAATATTGGTACAGGAGTCAAGCTTAAAAGTGCATGTGCTACCATGGCTTTTCAGAAACTTGTTTCTCTGAAGTCACTCAATGGCATCTCTGTTGGAGAGgtGATCAATGTGCTTTCTAGTGATGGCTATCGGATATTTGATGCAATCATTTTTGGGACCTTTACACTATGCATACCAGTCTTGTTGGTCACTGGTATCATTTATGCCTGCTACATTCTTGGATATACTGCACTCAttggtgtttttatatatattgtcttCATTCCTATACAGTTCACGATGGCAAAGCTGATAAACGGTTTCAGGAGGAAAGCTGTAATTATATCAGACAAGCGGGTGCAAACCATGAATGAAGTGCTGACTTGcattaaactgattaaaatgtatgcttGGGAGGGTTCATTTGAGAAGAATATTATGGGTGTGAGAAAAAATGAGAGGAAAATCCTAGAAAAAGCAGGTTATATTCAAAGCGTCAACAGCTCTGTGACTATCATCATTCCCACAGTGGCCACAATCATAACCTTTGTGGCTCACACGTCTCTGAATTTGAACTTGACATCTTCATCTgCCTTTACCGTGATAGCTATTTTCAACTCAATGAGATTCAGCCTTGGCCTCCTTCCATTCTCAGTCAAATCCTTGGCAGAAGCTAAAGTAGCTTTGGCTCGATTAAAGAAAATTCTCTGTATTGAAAATCCCGAACCATACCTCACTAAGTTAAAAGACTCCCCGAATGCATTAGTCATGGAAAAGGCCTCTTTTTCCTGGGAACGGCCCCTGGACACTCATGAAGCTGCACAGGGTGTCAGAAATGGGCTGAAAGGAGATAAGAATGAAGCAGAAACCCGAAAGAGTGAACATGGAAACAGAGCTGCTTTGAGAAACATCAGTTTTACATTGCAGAAGATGCACCTGCACCACGGATCTGTGGCAGCAGATGGAGAATTTGCCTATGTGTCTCAACAGGCCTGGATATTTCACGGAAGTGTGCGGGATAATATTCTCATGGGAGAGACATTTGATAAAAATAGgTATAACAAAGTAATTCGTGCCTGCTGTCTAAAGCCCGATTTAGCAATTCTTCCATATGGTGACAAGACTGAGATTGGTGAAAGGGGCCTCAATCTCTCAGGTGGGCAGAAACAGAGGATCAGCCTTGCCCGAGCGATCTATTCCAACAGAGACATCTACCTTCTGGACGACCCGCTTTCAGCTGTCGATGCCCACGTTGGGAAACACATCTTTGAAGAATGTATCAAGAAGGAACTCAGGGGGAAGACTGTCATTCTAGTGACTCATCAACTGCAGtacCTGGAGTTCTGCGACGAAGTCCTATTACTTGAAAATGGGGAAATAAAGGAATGGGGCTCCCACGAAGTCTTAATGAGCAATAAAGGAAAATACTCTCAGCTTATCAATAACTTCCAATCAGAACACTCAAATGAACAAAAAGATGATGACAGTAAACCAAAATCAGCATCTATTCCAGAAGAACATCCTCCTCAGGTTGCCAATGGAATAGACAATCCAGcttttgatATGTCAGATGAGATTAATGAATCTGAAGAGCACAACAAGGACACACATGGCAAAAGAGGATCCAAGGATCAGCTTGTTTTGACTGAACTAATGCAGGAAGGTTCAGTTTCATGCAAAGCTTATCATCACTATGTGAAAGCAGCTGGAGgatATTTTCTGGCTCTGTTTGTTGCATTGGTGTTCATTGGCGTACTAGGAGTATCTGCTTTTAGTAACTGGTGGCTGAGTTTTTGGCTAGAGCAAGGATCTGGGCAGAATAGCTCTTTGGTTGCAAATATTTCTGACAACAACACAATGTATTCAGGAGATAGTGGCAATGTTACAGAAAACCCCAGACTTCATTTTTACCAGCTGGTTTATGGGATGTGCATTGTGGGAATGGTTGCACTGAGTGTCGTCAAAGGATATGTGTTCACAAAAACCACCCTGAGGGCTTCTTCAAAGCTCCATGACAAGATGTTTCACAAGatcCTGCGCAGCCCAATGAGTTTCTTTGACACCACACCAACTGGAAGGATGATAAACAGATTCTCCAAGGACCTGGATGAGATAGATGTTGGCACACCCTTCAATTTGGAGAACTGTTTTCAGATCTTCCTGCAAGTTTTATTCACCGTTATCACAATCTCGGCTGTGTTTCCCGAACTCCTCATCGCAGTCGTATTGCTGACTATGTTATTGGGAGTTATTCTATTTATTTTCCAAAGGAGCATTAGGGGGCTAAAGAGATTGGAAAATATCAGTCGGTCGCCATGGTTTTCTCACACTACATCTACAATTCAAGGACTCAGCACCATCCATGCCTACAAGAAGGAGAAACAATATATAGCCAAgtTTATGCAATTGAGTGACATCAATTCTAATCATTTCATGCTGTTCAACACTGGGACAAGATGGCTTTCCTTTAGGCTGGATTTTCTCACCACAATAATCACTCTACTGGTTGCCTTATTTGTTGTTCTGAGCCCTCCAACAATCAATGCAGCATATAAAGGGCTAGCTCTGTCCTACACAATCCAGTTAACTGGTATGCTGCAGTTCTGTGTAAGGCTGGCAACTGAACTGGAGGCAAAATTCACATCAGTAGAAAGGATACTAGAATATATACTGGGCTGTGTCTCCGAAGCACCCACTAAGATTAAGGATGCAAATATCCCAGACGGCTGGCCTCATAAAGGTGCAATCACTTTCAAGGAATACCAGATGAGATACAGAGAGAACACTCCAATAGTCCTGAATAGTTTAAATTTAGAAATTGCTGCAAAGGAAAAAGTTGGAATTGTAGGAAGAACGGGTTCTGggaAATCTTCCCTTGGAGTTGCCCTGTTTAGACTTGTTGAGCCATCCTGTGGTACAATCTTCATTGACAATGTAGATATCAGTAGTATTGGACTGGAAGATCTACGAAGTAAACTGGCTGTAATTCCCCAGGATCCAGTGTTGTTCATTGGTACTATAAGgtATAACCTTGATCCCTTTAACAAATACAGTGATGAAGATATTTGGAAAGCCCTGGAAAACACATATATGAAGGAAACAaTCTCAAAGCTGCCTGAGAAGCTAGAATCCAAGGTGACAGAAAACGGAGAGAATTTCTCTGTGGGAGAAAGACAGCTGATGTGTATGGCCAGGGCCCTGCTCAGAAACTCAAAGATAATTCTGCTGGATGAAGCCACAGCGTCCATTGACTCGGAGACTGACGGTCTGATCCAGCACACCATTCGCCGGGCATTTCAGGACTGCACCATGCTCACCATCGCTCACCGGATCAACACTGTGGTGGAGTGTGACCGGATTCTGGTCATGGACAATGGAAAgGCCGCTGAATTTGACAGACCAGAAGTCCTTTTACAGAGACCAGATTCATTATTTGCATCACTTCTCGCAGCTGCCAACAACATGGAAACGTGAGCAGAGTCGGGAAAGCCTCTGTACTGCTGCTGGCTGCACTCCTCTTTGGCTTTCGACAACAAACAATCTTTGACAACGAACACGCACAGtctttgtgatttatttgtcattgaTGAAGGGGAAATGCAAGGCTTTTGTTGAACAGCGATAGTAACTGGTCTTCAGTAGCGGTAATGGAGGACAGTGAGATGTAGGACAGATTGCAGGTGGGATATGGAATGTTAATaagtaaaatagaaaaatagctGTTCAATTCAATGCACCCATTTTGATGGGTTCGGTCCGTAATATTCCAGAGTGGAATGTTGATAAGAAGATGCGTTTGATGTTGAAACCTCTCATTTATCTCCCCTGTCTGTGCCGTTGAGCTGCAGACAGTAGATTGGAGTGAACTGCCCCCCCTGACGTGGTGCTGGTTGCCCTGTTGTGCTTAGCAGCTGGTAAAACTGCAGCCAACTCATTTcataaaactgatattttttatgaaatattaaaggAATTGGGGAAACTCCTCaactttatatttgttttattctattgatacggtttctttttttattatatttaatagcCATGTAAATGCTGCATCAAAAaggtaacttatttaatttaatatgtttttaacagaCTCAAAATCCTTGATTGTCTTGGCTGTAAGTCACACAATTTGGCAACCCTGAGATGATAAATGACTGAGAACTGAACTTTCCGTTGGCATGgacaatttaattttttctctaGCCAAGAAAGcaagattaattgttttttcgTGTCTTGAAAAATCACCCAGAATATCAGGTTGTAACTAGTGTCACATCTTATTAATCGCAATTGTGGCTCAAACTGTTGTGTGCTCTAAACTTAAGCTAAAGTTGTGACTGGTATTTAACTctttaaacacagaaatgtatgtcttgtctttttttacacatattgtatatttactATTGCACATGTCCTTGactatttgtacatttaaattctgGAGTAAAAATAAAGCTGCTCAGTAAGACTAAGCAAGTATGCAGTGattgtttaaacaaaacaggaagCAAGCTCATTATTTCATCTGCTGTGGGATATGTTAATGCACCCATatggcaaaataataacaaaaatataaacaaacagctGGAGATATTGGTGAAATCACTGTACCTCTTTTACATCACTACAGGAGCATCCCTCCCCCAAAAAAAGCTTTCGAAG

Function

GO: NA

KEGG:

id description
K05672 ABCC12; ATP-binding cassette, subfamily C (CFTR/MRP), member 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020464 True 5398 mRNA 0.42 29 20541518 20559873

Neighbor

gene id symbol gene type direction distance location
AMCG00020462 NA coding downstream 77260 20463204 ~ 20464258 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding downstream 174526 20363110 ~ 20366992 (-)
AMCG00020451 NA coding downstream 186823 20332687 ~ 20354695 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding downstream 214495 20319679 ~ 20327023 (-)
AMCG00020454 mylk3,LOC107598691,LOC107659456,LOC107742117 coding downstream 265049 20263295 ~ 20276469 (-)
AMCG00020465 cdh8,LOC106561990 coding upstream 549113 21108986 ~ 21132111 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding upstream 1080781 21640654 ~ 21659803 (-)
AMCG00020472 tk2,LOC106587284 coding upstream 1561796 22121669 ~ 22128173 (-)
AMCG00020478 LOC106561981 coding upstream 1585920 22145793 ~ 22164159 (-)
AMCG00020476 LOC107564548 coding upstream 1605906 22165779 ~ 22184597 (-)
G63346 NA non-coding downstream 285119 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 905275 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 1463760 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 2104579 18436525 ~ 18436939 (-)
G63092 NA non-coding downstream 2142787 18397467 ~ 18398731 (-)
G63447 NA non-coding upstream 523389 21083262 ~ 21083461 (-)
G63628 NA non-coding upstream 1822491 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 1823644 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 1855462 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 1985895 22545768 ~ 22546057 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 241675 20288570 ~ 20299843 (-)
G62961 NA other downstream 2501558 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 2525656 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 2915329 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 3723751 16794996 ~ 16817767 (-)
G63464 NA other upstream 752329 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 1570969 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 1880919 22440792 ~ 22466767 (-)
G63679 NA other upstream 1983969 22543842 ~ 22544689 (-)
G63819 NA other upstream 2594819 23154692 ~ 23161900 (-)

Expression


Co-expression Network