AMCG00020465 (cdh8,LOC106561990)


Basic Information

Item Value
gene id AMCG00020465
gene name cdh8,LOC106561990
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 21108986 ~ 21132111 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020465
ATGTTACACCTGTCTCAGCATGCTTGGTACACGATTGGAAACCTGCATTATGGATTTGGTTTTGTCATCCTTGACAAACTGGTCCAAGGTACTTCGGTCACAACAGTAACAGCCACAGATGCAGATGACCCTGTGTATGGAAACAGTGCCAAGCTGGTCTACAGCATTGTAGAAGGACAGCCCTACTTCTCCATTGATCCACACACTGctgaTATCAAAACTGCCCTACCTGGTATGGACCGGGAAGCCAGAGAGCAGTACCTTGTTGTCATCCAAGCAAAAGACATGGGAGGTCACATGGGAGGCTTGTCAGGGACTACAACAGTCACAATCACTCTGACAGATATCAACGATAACCCACCTAAATTCTCGCAAAGTCTGTATCACTTCTCAATACCAGAGGACCTTGGTGTTGGTCATGTTGGAGGAAGAGTGAAAGCAAATGACCGGGATATTGGAGACAATGCCAAGTCATCATACCGTATTATTGATGGAGATGGAAGAGATGTCTTTGAGATAACTGCAGATCCCCAGACACAGGAAGGAATCCTTCGGCTGAAAAAGCCTCTGGACTTTGAGACCAAAAAATCCTATACGCTGAAGGTGGAGGCAGCCAACATTCGTATCGATCCTCAGTTCAGCAGTGGGGGTCCCTTCAAGGATACAGCGACAGTGAAAATTGCGGTTGAAGATTCGGATGAACCCCCGGTCTTTTCAATGCCTACTTATCTTGTGGAAGTACATGAAAATGCAACTATTAACTCTGTTATTGGCCAGGTGACTGCCCGTGACCCAGATGTTACTGCCAGTCTTGTAAGGTATTTGATTGATCGCCACACAGACCTTGAGAGGCAATTCAATATTAACGTTGATGATGGGAAGATAACACTAGCAAAACCACTTgatagagagacagatacaTGGCACAACATCACTGTGACAGCCACTGAAATCAgGAATAACAGTCAAATATCTCAAGCTACTGTTGCTATTAAAGTTCTTGACATAAATGACAATGCTCCTGAGTTTGCATCAGAATATGAAGCTTTTCTGTGTGAGAATGGAAAACCTGGGCAGGTTATTCAGACAGTCAGTGCCGTTGACAAGGATGACCCAAAGAATGGGCATTATTTCATGTATAGTTTGGTGCCAGAAATGTCCAACAACCCTAATTTTACCATCAAGAACAATCAAGACAACTCTATCAGTGTTCTTGCCAAGCATAATGCCTTCCGGCGTCAGAAGCAGGAGATGTACTTTCTACCCATCATCGTTCGTGACAATGGCCACCCCCCCATGAGCAGCACCAACACGCTGACTATCCGGGTGTGCGGTTGCAGCAGTGATGGCATTGTCCAGTCTTGCAATGTTGAAGCCTATGTTCTGCCCATTGGACTTAGCATGGGAGCCTTAATCGCTATTCTAGCATGTATAATCTTACTATTAGTTATTGTCGTGCTATTTGTGACTCTGCGAAGACACAAAAATGAGCCTCTTATCATCAAAGATGATGAGGATGTCAGAGAAAACATCATCCGCTACGATGATGAGGGGGGAGGTGAAGAAGACACAGAGGCCTTTGACATCGCCACTTTGCAGAACCCTGACGGGATTAATGGGTTCCTGCCTCGCAAGGACATCAAACCAGATCTACAGTTTATGCCTAGACAAGGACAGCACTCTGCCCCTAACGGTGTTGACGTTGATGAGTTCATAAATGTACGGCTACATGAAGCTGATAATGATCCCACAGCACCCCCTTATGACTCAATACAGATCTATGGCTATGAAGGTAGGGGCTCAGTGGCTGGCTCACTAAGTTCACTGGAGACAGCTTCTTCAGACTCTGACCAGAACTTTGACTACCTCAGAGAATGGGGTCCACGTTTTAAGAGACTGGGGGAGCTCTATTCAGTGGGAGAGAGCGATAAAGAGACTTGA

Function

symbol description
cdh8 Orthologous to human CDH8 (cadherin 8).

NR:

description
PREDICTED: cadherin-8-like isoform X1

GO: NA

KEGG:

id description
K06800 CDH8; cadherin 8, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020465 True 1941 mRNA 0.46 10 21108986 21132111

Neighbor

gene id symbol gene type direction distance location
AMCG00020464 NA coding downstream 549113 20541518 ~ 20559873 (-)
AMCG00020462 NA coding downstream 644728 20463204 ~ 20464258 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding downstream 741994 20363110 ~ 20366992 (-)
AMCG00020451 NA coding downstream 754291 20332687 ~ 20354695 (-)
AMCG00020452 dnaja2,LOC100286703,LOC106524269 coding downstream 781963 20319679 ~ 20327023 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding upstream 508543 21640654 ~ 21659803 (-)
AMCG00020472 tk2,LOC106587284 coding upstream 989558 22121669 ~ 22128173 (-)
AMCG00020478 LOC106561981 coding upstream 1013682 22145793 ~ 22164159 (-)
AMCG00020476 LOC107564548 coding upstream 1033668 22165779 ~ 22184597 (-)
AMCG00020475 NA coding upstream 1064324 22196435 ~ 22214941 (-)
G63447 NA non-coding downstream 25525 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 852587 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 1472743 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 2031228 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 2672047 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 1250253 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 1251406 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 1283224 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 1413657 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 1417304 22549415 ~ 22549727 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 809143 20288570 ~ 20299843 (-)
G62961 NA other downstream 3069026 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 3093124 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 3482797 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 4291219 16794996 ~ 16817767 (-)
G63464 NA other upstream 180091 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 998731 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 1308681 22440792 ~ 22466767 (-)
G63679 NA other upstream 1411731 22543842 ~ 22544689 (-)
G63819 NA other upstream 2022581 23154692 ~ 23161900 (-)

Expression


Co-expression Network