AMCG00020471


Basic Information

Item Value
gene id AMCG00020471
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22130842 ~ 22132737 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020471
gaagATATAGATCAAAGGAAGTAGACATATCTTGGGTaggccttcatctagcagtggatcgatataggcttatgatgatatatatatataacttctGTGCctcatacattttacatttcctgttcaGTTCATGTGGATTCACTTTCTCTTCCAGGTGACTGTCTTCATAGCATTCGTGTGCTTTGCCACAGCACCTGGACCTCCCTACATCGCTGTTACCTGTATGGAGTTTATAATAACTCTCTCACTTTTCCTCCTGTTCTTCTTGAAGCTTAACAAGaggattacatttttcttctggcCTCTTATTGATATCTTTAACTCAGCCTTTGCAGCAATCTTCATGTGTATTTTAAGTCTCATTGCAGTCTCCAATTATTCAGCCAAAGGAATTATTGGAGGTGGGATCGTAGGGTTTATAGCGACAGGCCTTTGGTGTGCAGATGCGTACCTACTCTTCAAGAAAATAACCTTCAACCAACCAAGAAGTGCTCAATCAACTGAACAGAAGTGATGAGAACAGCAATCAGGACCTGTGTCAGCAATTTCAATAGTGGCCTAGTCATGATGTCATCTTGAACATTTCAAGAAAGTGTTGACTCTTTGCTTAAGTGTGTAATTATGtgtatctttttaaattaaatgcatccatgtaaaaaatgtaagtaaagAAACTTAAACCTAACCCAAAAATATCTGCAGAAAACGTGAATCTTTCGATCACAAATTCTCTCTTCAAGAAAAAGCTCACAAAAAAATGGACCTCGAGAAGTCCTAATGGAGGAAAGAGtgaaatgcatattaatgaaccataaacatataattaaaGACTTCATggacaaaaac
>TU79510
gttatttctcTATAGCTGGCATTGTCTTTGTACTGCATCAGAAAAGTCTCTACAAATCACAGGGGGCTAGACAGAAAGAAACTACATCGTTTCCAGGGTCGCTATCATCTAGTGCATCAACATATAAGGTGACTGTCTTCATAGCATTCGTGTGCTTTGCCACAGCACCTGGACCTCCCTACATCGCTGTTACCTGTATGGAGTTTATAATAACTCTCTCACTTTTCCTCCTGTTCTTCTTGAAGCTTAACAAGaggattacatttttcttctggcCTCTTATTGATATCTTTAACTCAGCCTTTGCAGCAATCTTCATGTGTATTTTAAGTCTCATTGCAGTCTCCAATTATTCAGCCAAAGGAATTATTGGAGGTGGGATCGTAGGGTTTATAGCGACAGGCCTTTGGTGTGCAGATGCGTACCTACTCTTCAAGAAAATAACCTTCAACCAACCAAGAAGTGCTCAATCAACTGAACAGAAGTGATGAGAACAGCAATCAGGACCTGTGTCAGCAATTTCAATAGTGGCCTAGTCATGATGTCATCTTGAACATTTCAAGAAAGTGTTGACTCTTTGCTTAAGTGTGTAATTATGtgtatctttttaaattaaatgcatccatgtaaaaaatgtaagtaaagAAACTTAAACCTAAC
>TU79512
ctTAGAAGAAGATGagGTGACTGTCTTCATAGCATTCGTGTGCTTTGCCACAGCACCTGGACCTCCCTACATCGCTGTTACCTGTATGGAGTTTATAATAACTCTCTCACTTTTCCTCCTGTTCTTCTTGAAGCTTAACAAGaggattacatttttcttctggcCTCTTATTGATATCTTTAACTCAGCCTTTGCAGCAATCTTCATGTGTATTTTAAGTCTCATTGCAGTCTCCAATTATTCAGCCAAAGGAATTATTGGAGGTGGGATCGTAGGGTTTATAGCGACAGGCCTTTGGTGTGCAGATGCGTACCTACTCTTCAAGAAAATAACCTTCAACCAACCAAGAAGTGCTCAATCAACTGAACAGAAGTGATGAGAACAGCAATCAGGACCTGTGTCAGCAATTTCAATAGTGGCCTAGTCATGATGTCATCTTGAACATTTCAAGAAAGTGTTGACTCTTTGCTTAAGTGTGTAATTATGtgtatctttttaaattaaatgcatccatgtaaaaaatgtaagtaaagAAACTTAAACCTAAC

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020471 True 846 mRNA 0.37 3 22130842 22131914
TU79510 False 660 lncRNA 0.39 4 22131002 22132737
TU79512 False 548 lncRNA 0.39 4 22131002 22131959

Neighbor

gene id symbol gene type direction distance location
AMCG00020472 tk2,LOC106587284 coding downstream 2669 22121669 ~ 22128173 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding downstream 471039 21640654 ~ 21659803 (-)
AMCG00020465 cdh8,LOC106561990 coding downstream 998731 21108986 ~ 21132111 (-)
AMCG00020464 NA coding downstream 1570969 20541518 ~ 20559873 (-)
AMCG00020462 NA coding downstream 1666584 20463204 ~ 20464258 (-)
AMCG00020478 LOC106561981 coding upstream 13056 22145793 ~ 22164159 (-)
AMCG00020476 LOC107564548 coding upstream 33042 22165779 ~ 22184597 (-)
AMCG00020475 NA coding upstream 63698 22196435 ~ 22214941 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding upstream 83832 22216569 ~ 22223699 (-)
AMCG00020483 NA coding upstream 137977 22270714 ~ 22307475 (-)
G63447 NA non-coding downstream 1047381 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 1874443 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 2494599 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 3053084 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 3693903 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 249627 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 250780 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 282598 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 413031 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 416678 22549415 ~ 22549727 (-)
G63464 NA other downstream 818237 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 1830999 20288570 ~ 20299843 (-)
G62961 NA other downstream 4090882 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4114980 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 4504653 17610664 ~ 17626189 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 308055 22440792 ~ 22466767 (-)
G63679 NA other upstream 411105 22543842 ~ 22544689 (-)
G63819 NA other upstream 1021955 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2515266 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2559156 24691893 ~ 24698947 (-)

Expression


Co-expression Network