AMCG00020472 (tk2,LOC106587284)


Basic Information

Item Value
gene id AMCG00020472
gene name tk2,LOC106587284
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22121669 ~ 22128173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020472
ATGTCTTCTTCCATAGATAAACTACTGAGGAACGGGGAGCAGAGGAAGTCCGTTatttgtattgaaGGGAACATTGCCAGTGGGAAGACAACTTGCTTGGAATATTTCAGCAAAACTAGTAACATTGAGGTGCTGACTGAACCCATTTCCAAATGGAGAAATGTTCGAGGCCATAACCCACTGGGGCTGATGTACCAGGACCCCTTTCGCTGGGGGATTACCCTGCAGACCTATGTGCAACTCACCATGCTGGACCGCCACATCTCACCCATTATGTCTCCTGTGCGAATGATGGAGAGGTCCATATACAGTGCCAAGCATATATTTGTGGAAAATCTCTTTCGaagTGGGAAGATGCCTGAGGTGGATTTTGCTGTTCTAAGTGAATGGTTTGAGTGGATCGTGCTGAACATTGACATTCCCCTGGATCTTATTGTTTACCTGCAGACCTCTCCAGAGACCTGCTATGAGAGACTGAAGAAGAGATGTAGAGAAGAGGAGAAAGTGATTCCTATGgaataccTGGAAGCTATCCACCAGCTGTATGAAGACTGGCTAATTAAGAAGACTTCATACAAAGTTCCTGCCCCAGTTCTTgtTATTCCTGCAGATCAAGATGTTCAGGTGATGCTGAATCAGTATGAGGAGAATAGGGAAAGGATTTTGGCAGCTAACAACATGTAatttaaagagagagaacatgTACAGGAAAGCTGGGAGACGAAACAGGGGAGCTCTCACAGCTTGTGTTCAATGATGGACAGCTGTTCATTGGCcatttaaatcatgatttttCTGCTGTGTATAAGCTGTTCTCGGTAACATTAATTTACAcactattttaaagttttgtttttcatgacacctgatttttttaatacacaaatagCACTTAAAGTTACATGACTTCTCAGACTCTTATCCAGCaactttttatctttttatatgtatgttgGCACTTTGGGAACATTGTGAAGCACAGTACACCTTAGTACTGagccaataaaataataaactgagtTCGGATAAAACCttgttaaatactgtattatgttCTGGTATAGACCGTGGCCAATCCTGTTTACAATTTTTGATACATATTCTACATATACTCAACATTGATTGGTATTAAAATTGCTTTTTGCTTTGGAATCACCCAGGCCTGAAAGCTAAGTTTTGCATATTGTATAGCCCTGCTGTTTTACTGGGACcagaatgttgttgtttttttaacaattcaggattttgctgttattttcttCCAGGTGCTTAGGATTACTGTAcacattttagatttgtattcTTCCTGGAAAAGTAGagggaagaataaaataaaaatggatagTTTCACTATCAGGAAGATAACATAATTGTCTACGATTATTCTGCTTTTAAGAGTAAATTGTTTACTGACATCGTAGTTAGGACGATTGTCCTTTAAACTTTGCTTTAACaacttattttcataattttgcagattatgatttaaaattttAAGTTAAAGTGGAGaattttaacattgtaaaatCAAAGTTGAAGATTTGAATTAAGGCCTACATTTTCTGTAacttacaattattacattaatgtatttaaaaacctCTTTCAGCTGT

Function

symbol description
tk2 Predicted to enable deoxynucleoside kinase activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process and phosphorylation. Predicted to be active in cytoplasm. Is expressed in exocrine pancreas and pectoral fin. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 3 and mitochondrial DNA depletion syndrome 2. Orthologous to human TK2 (thymidine kinase 2).

NR:

description
PREDICTED: thymidine kinase 2, mitochondrial isoform X2

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020472 True 1613 mRNA 0.37 9 22121669 22128173

Neighbor

gene id symbol gene type direction distance location
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding downstream 461866 21640654 ~ 21659803 (-)
AMCG00020465 cdh8,LOC106561990 coding downstream 989558 21108986 ~ 21132111 (-)
AMCG00020464 NA coding downstream 1561796 20541518 ~ 20559873 (-)
AMCG00020462 NA coding downstream 1657411 20463204 ~ 20464258 (-)
AMCG00020463 itfg1,LOC106587292,LOC107598687,LOC107660666,LOC107723136 coding downstream 1754677 20363110 ~ 20366992 (-)
AMCG00020478 LOC106561981 coding upstream 17620 22145793 ~ 22164159 (-)
AMCG00020476 LOC107564548 coding upstream 37606 22165779 ~ 22184597 (-)
AMCG00020475 NA coding upstream 68262 22196435 ~ 22214941 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding upstream 88396 22216569 ~ 22223699 (-)
AMCG00020483 NA coding upstream 142541 22270714 ~ 22307475 (-)
G63447 NA non-coding downstream 1038208 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 1865270 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 2485426 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 3043911 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 3684730 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 254191 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 255344 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 287162 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 417595 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 421242 22549415 ~ 22549727 (-)
G63464 NA other downstream 809064 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 1821826 20288570 ~ 20299843 (-)
G62961 NA other downstream 4081709 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4105807 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 4495480 17610664 ~ 17626189 (-)
AMCG00020471 NA other upstream 2669 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 312619 22440792 ~ 22466767 (-)
G63679 NA other upstream 415669 22543842 ~ 22544689 (-)
G63819 NA other upstream 1026519 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2519830 24648003 ~ 24677810 (-)

Expression


Co-expression Network