AMCG00020475


Basic Information

Item Value
gene id AMCG00020475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22196435 ~ 22214941 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020475
gacaatgacaatgttGCTTTTTTGATTGAATGACCCAGGATTTGCAGTCAGACATCAACCCTGTTGCTGGAGGGGCCCAGTGATTTTAGGTGTCCTCAGTCACGCAagtatttgtaatatgaatatttaaaataaatctagtatatgtaattataatacaaacagAGTATTTCTTCAGAAAACGTGCCAAATCCTGGAGAACAGAGTAGCAATGGAAGTTTCAAATCAAGACGGAGGAAGGCGACTTTGTGGTGATATTGTAGATTATTTCAGAGATATCGGAGGACTGCTGTTTCTGTTCAAGCTTTCCAAATCTGTAGCGAATGTCGAAGTAAAGGAGGCGGCCCTCTTTACATTAGGAGGTTTAGCTGAGAGCAATGTTTTTTGCAAGCAAGTGTTGTGTAGCACAGACCTTTTTACTGAATTATCCCAGTCACTATCACCGGACTCTCCACTGAACCTTAAAAGGGTAGCAGTTTACATGGTGTCAGTGCTAGTCATCAACAACAAGTCTGGCCAAACTCTTGTTAAAACTACAGGCTGCATTGACATCCTCTTGAATTTATTCAGAACAAGTTTTCCTATCTCGCATGACAACATGAGACAAGCCAACATTACCCAAAGCTACCAGCTGTGGACATCTGTGTCCAATGCTCTGTGTGGCTGTGTCAATAACCCACAGAATGAAGAGAACCAACGAATATGTGCATCTGCCTTTCCCGTTTCAAATGAGTGGCTACAGAAATGTGTTAGGAAAGAAATAATACAGCCAATTTGCACCTTTATAGGGATGACTGTGTCAGATAATGCCTATGCTCAGGGCTGCTTTGCCGCAGCCGGAGGATTAGACACGCTGACGCAGAATCTGGTGAAACTGGCAAGCAACTGCAGCACGAGCCCCTCTGCATGTGATCTTGTAGTTGTGATGACAAAGACCCTGTGTGCTTGCATAGCTGATAATGCTCACCTCTCTTCAACGCTACCACAGTATCATCTGGTCCCCAAGCTTGTGTCACTGGTTTCTAGTCAGATCTTTAATTCAGAAGACCTGCTGTGTATTGTTCTTGCTCTAGGTCTTTGTACTGAAGCCTGTGAGGAGCATCAGATTCAGCTGCTGCAGAGTGGTGGTCTCCCCCAGATGATTCAGTTGCTGACGGCACCGCAAGATGAGGAAGTGAAACAGGCAGCCACTTTTGTTCTACAAACCTGCAAACAAATTAcTGAAAATCTAGCACCAGACCTTAGTGAGCAGCCCTGCCAGGTGCCAGGCAAATCTCACCGTAACCTGCAAAGTTACCAGAAGTCAGCGAGTGCAATGTGGGAGAGGTTGGATATTTTAGAGAAGATGCATGCTGAGGCTATGCAGGTGAATGTTGATGAGTTTGAGAACAATGGGGAGAATTCCTGTGATGAGTTTTTGGGATCCATGGTCACTGCACAGTTTGGGGAGATGGAAGAAATACGTCAGAACCTCTCTTCAGGCTCTGCTGTGGAGTCATGCTCGGGAACCCCGGTGAGAAAAGTGAAAGGACAGCCCAAAGCAAGGGACAAGATCTTTCACTGGTGTAATATCATGATGGAGAACAGAGAACACACCCCTGATCACTCCATACCAGCAGACATCAAGGTTAAAAGAGGCATTCGCATTCGGGGAGACGCAGAAGGAAACGGGACAAGGAACCAAAACAAGTGTCTTGCGGACCGAGTTAAGAAGAGGATATTCAGTGCAAACAGTGAACTACAAAACATGGTGGACAAAGCTGAGCAGTGGCCCCAGGTGAGCTCAGCTCACTGTAGCAGAGAGGAGCTAGAGCCAGAGAGAGGCCATGGTGCGGCAAAGCCACGGGCTGGGTCTGTGTGTGCCTCGGAGCCTGTGGATCAGCAGGAAAATGCCTCTCACAGGATCCCTCTCGACACACTGCCGGCTCTCTGCTCATCCTCACAGACAGCCAAGACAGCAAGAGCACTAGACAGAGAGCACAGACCCCAGTCAGAGAGtcAAATTGATTTCAAATGTCCCGCTCCAGTtaagaaaagcaacaaaaccCAGAAGCAAACTAGGATTTCTGTAGAAGATCATTTCAGCATATGTTCAGAAGTTCTAGACCATGAAATCGACAATATCCTGAAAACGCCAGCATTGGTGAATCAGCATAAAACCTTTCGGTGTTCAGGGATTACATTGACTCCTCAAAAGAAATCTTGCAACACTGaagaTAAGGGCAAAAGGACACAGCAAAGAGAGGACACGACAGTTGACCTCCAAGAGACAAAGGATGGAGATCTCtacacattttatGATTCAGGTGACTCTCAGTCCAATGCCTCATACAAGACCCAGGTGGCcaggaggagaaacaggaagaaCTTCAGTGCAGAGGAAGTAGGCTATTTGTTGGATGGAGTAAAGAACCTGGGTTATCACTGGAATTCAATACTTTGGTCTTACCCCTTCCACAAAGGAAGGACCAATGTGGACTTGGCAAAGAAATATAaaggaaaacaaagtggAAGTGTTCTCAAATAACCAAGACCACCAACATATCATGAATGTATTTAGGAAATAATGATATGTGTGCAACTCATTTCACATGTTTTCTGCACCCTTTTGTCATTTAGttctcttaaaatgttttttctcccccactGCTATCAAAGTGTACACAAGGGTTGTCGGTTGAGCACGAAGTAAACATTAGAATTCTTAATTGATTCTCCTATTAAAGTGCATCAGTAGGGTCCTGGAGTctgcttcaaaacaaaaagcttgCATACCCTTCCAGAAAAGGGGATGCTCGAGACTAGTTTTCACTCCAAGCATGCAGAATTGtataaagagaaaatgtaacCGGCAGAAACCATGATTTGTTGATTGAAAGTCAGATATAAACACAGTATTAAGGGTCTGTGAAAATACCCAGGGCAATGTAGaatgtaattttaacattaatcATAACATTGCCGATTTGCAACTAACCAAATTCATGTAATGCATGTTTCATTTCCCAGTTGAAAATGTTATTGTCACCTTAAACCCTGGAATAAGCTTGTATACAGCCATTCCatcataaatattttttgtctcCTGAATTTGTAAATCTAAAATCAATTCACTGCATTCATAGAAATAAACTGTGCAAATGACAGGTAGCTAAGAATCTTTTGCAGAGCAATGTTTCCTTGAATCATTGTTTCCCCCCATTAAGTCACAGACCAAGCACACCACCGATTCCctcaagaaaatgttttcttgtatgCTAGCATTATATAACAAAAGCCACAGAGTAATGGAATCACTTTGCCTTAGGATTTTGGAATTGGAAAGAATGAAGAAGGCAAAGTACCCTgagtttttccagtttgttttatttcttgttgaGGAACGGACAGTAGAAAGACTTAAGCTTAAGGCTGCTAGTCTTGGATGTAAATAGTTTAGAACTTGGGTGAAACCAATCCTAGAAGAAACTAGGCTACCACAAACTTAGTCCAACATCCCTGTATTAACTCTGGGATAAACAGGGACATGGTGTGAAATCagttctcattttcttttaatctatACATGTGTCCAAGCAGTAGTTCCATAacactcccctcccccacagATAAACAATGGACCAGATTTGTTACAACTGCTCCCTGCAACATTACTGGATCTGCTGGAGATTAGGCCtaaaccaaaatcaaaactaaatcgcaaagtacaaacctttaaatttggtttacatttttttgtagtaaaaagtggcttctgacaataacaAACTACAATTGGATACAAATTTGCAATTCATAACTCACTGGTAGAggaacattttgatttggtttaggcTTTAGTTATAGGAAATCTAGAGGTGCGTTTCTTTGTACACTGGAAGTAATGGACTAATACCAGAACTTAAACCAGCCCTAACTGCCACCcctttatatatgtgtatcactttaaaataaatattacatggatttataaaaaataaaaatctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020475 True 3987 mRNA 0.42 18 22196435 22214941

Neighbor

gene id symbol gene type direction distance location
AMCG00020476 LOC107564548 coding downstream 11838 22165779 ~ 22184597 (-)
AMCG00020478 LOC106561981 coding downstream 32276 22145793 ~ 22164159 (-)
AMCG00020472 tk2,LOC106587284 coding downstream 68262 22121669 ~ 22128173 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding downstream 536632 21640654 ~ 21659803 (-)
AMCG00020465 cdh8,LOC106561990 coding downstream 1064324 21108986 ~ 21132111 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding upstream 1628 22216569 ~ 22223699 (-)
AMCG00020483 NA coding upstream 55773 22270714 ~ 22307475 (-)
AMCG00020482 rrad coding upstream 106144 22321085 ~ 22324965 (-)
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding upstream 138005 22352946 ~ 22354526 (-)
AMCG00020492 LOC107685863,LOC107600353 coding upstream 259352 22474293 ~ 22512944 (-)
G63447 NA non-coding downstream 1112974 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 1940036 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 2560192 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 3118677 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 3759496 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 167423 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 168576 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 200394 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 330827 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 334474 22549415 ~ 22549727 (-)
AMCG00020471 NA other downstream 63698 22130842 ~ 22132737 (-)
G63464 NA other downstream 883830 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 1896592 20288570 ~ 20299843 (-)
G62961 NA other downstream 4156475 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4180573 17987181 ~ 18015862 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 225851 22440792 ~ 22466767 (-)
G63679 NA other upstream 328901 22543842 ~ 22544689 (-)
G63819 NA other upstream 939751 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2433062 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2476952 24691893 ~ 24698947 (-)

Expression


Co-expression Network