AMCG00020478 (LOC106561981)


Basic Information

Item Value
gene id AMCG00020478
gene name LOC106561981
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22145793 ~ 22164159 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020478
ATGCGGAATAACGAGGAGGCGGACGGGTTTGATGGCGAGGCCTCCAACACGTCTATGATCTCGGGGGCCAGCAGCCCCTACCAGCCGACCACGGAGCCCGTCCACGCCGGACACGGACTTGGGGGGATCAGGTGCGACACCGGCTATCTGAAATCAAACTGCGGCCTTTTAAAAATCGCAGAAGTGCAGATCTTCGTGATTAGAATGAATGCCCACAGTGTGACCTCTGGACAGAATACTGTGGGCATGTTCCAGAAACCAATTGCTGACCAGCCAGTCCTTGCACTGATTGCCTTTATCTGCATAGAAACCATCATGCTGTGCTCGCCGTGTGGAGGGGTGTACTTCTTCGAGTTTGTCAGCTGTAGTGCCTTTGTGGTCACTGGGGTCTTGCTTCTCATATTCAGTCTCAATCTGCACACAAAAGTGCCCCATATCAACTGGATGCTCACAGACCTGGTGAACACTGGAGTCAGTACATTCTTCTTCATCCTGGCCTCGATCGTGCTGGCAGCACTGAACCACAAGGGCGAATCAGAAATCGCAGCAGTGGTGTTTGGGTTCCTGGTGTCCACAGTGTACGCCTTCAACACCTATCTTATTGTGAAGAAGTGGCGTATGGGAGACGGGCGCTCCGGTGCCGTGCAGACCAGCGAGTACACACGGGCCCGGACAGCGTCACGTGGAGAGATAGAGGCCCGGGCAGAGATCCAGTGA

Function

NR:

description
PREDICTED: CKLF-like MARVEL transmembrane domain-containing protein 4 isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020478 True 717 mRNA 0.55 5 22145793 22164159

Neighbor

gene id symbol gene type direction distance location
AMCG00020472 tk2,LOC106587284 coding downstream 17620 22121669 ~ 22128173 (-)
AMCG00020466 cdh11,LOC106587288,LOC106561988 coding downstream 485990 21640654 ~ 21659803 (-)
AMCG00020465 cdh8,LOC106561990 coding downstream 1013682 21108986 ~ 21132111 (-)
AMCG00020464 NA coding downstream 1585920 20541518 ~ 20559873 (-)
AMCG00020462 NA coding downstream 1681535 20463204 ~ 20464258 (-)
AMCG00020476 LOC107564548 coding upstream 1620 22165779 ~ 22184597 (-)
AMCG00020475 NA coding upstream 32276 22196435 ~ 22214941 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding upstream 52410 22216569 ~ 22223699 (-)
AMCG00020483 NA coding upstream 106555 22270714 ~ 22307475 (-)
AMCG00020482 rrad coding upstream 156926 22321085 ~ 22324965 (-)
G63447 NA non-coding downstream 1062332 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 1889394 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 2509550 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 3068035 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 3708854 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 218205 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 219358 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 251176 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 381609 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 385256 22549415 ~ 22549727 (-)
AMCG00020471 NA other downstream 13056 22130842 ~ 22132737 (-)
G63464 NA other downstream 833188 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 1845950 20288570 ~ 20299843 (-)
G62961 NA other downstream 4105833 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4129931 17987181 ~ 18015862 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 276633 22440792 ~ 22466767 (-)
G63679 NA other upstream 379683 22543842 ~ 22544689 (-)
G63819 NA other upstream 990533 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2483844 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2527734 24691893 ~ 24698947 (-)

Expression


Co-expression Network