AMCG00020483


Basic Information

Item Value
gene id AMCG00020483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22270714 ~ 22307475 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020483
ATGGCAGGAACTGTCCAATTGGGGTTGATAACCGGGGCTTCCACCCTGAACTCTGAGGTATGCAGTCTGTACAACCTGACAGTGATGGTCAAAGACATGGGAGGAAAACCCACTGGATATTTTTCAACTGGCACTTCCAAGGTAGATGTCACTGAAAACACATGGACCGCATTACAGCCTGTTCATCTGCAGGAGAACCTGCCCGGCCCCTATCCAAAAGCAATCTCCCAGGCTCAATGGAGTGGCAGCCAAGTCGAGTACAGCCTGGAAGGAGACTTCCCCGATATGCTCTTCTACATCGGCAAGGAGGGGGTGATCTATCTGACCGGTCCTctagacagagaggagaggccTGAGTTCCAGATAAAGGTTTTTGCAGAGAGGCCTGATGGCAGAGTGATGGCTGAGCCCCTGGAGCTGCTGGTCATGGTAGGGGACAAGAACGATAACAAGCCCATCTTCTCTCAGACCGAGTACCACGTGGTCATCACGGAGCACGCCACTCAGGgGACAGAAATTATCAAAGTTCAGACTACTGATGCAGATGATCCAAATACAGAACATGTAAATATCAGCTATAAAATCGTCAGTCAAACACCTGAAAGCCCAGAGCCTTTATTCCAAGTCAACCAGAAATCTGGGGCCATCATACTAGAGGCGGAAAGTCTGGAGAAAGCAGCATCTCAGTACACTCTAAAACTGACAGCAGTGGACCTGGGGGGCAAGGAAGAAGGCCCTCGTGCGGAGGAGATCAGAGGGAGAGTAGCTTTAGTGGTTAATGACTATGCCAAAGTGGGTCTCCTGGTCACCACAATCACAGCCTCCGATGAGGATAAGCCCAGCACAGATGGCTGGTTTGTGGATTATACAATAGGGTCTGGAAATGAAGAGGAAACCTTTAGACTactgacagacaggcagaccAATGAAGCCTCCTTAATCCTGCAGAAGACGCTTGACTATGAGCATGTGCAGGAGTACGTCCTAGTGCTCAGTGCCAGGAACGTAGAAGCCCTAGTTGGTGGAGTGTATGGGCCCGAATCCACCGCAACAGTGTCTATTCAAGTGGAAAATGTCAATGAGATGCCCATCCTTCCCAAGAGCCACTATGAGGTGACAGTGAGTGAGGAGGAACAAGCTGGGCAAATCCTCCTCAAAATACAGGCTATAGACCCAGACAGCACAATAAGataTTCTTTAAAAGGAGACACTAAGAATTATTTCACAATTGATGAGGACACTGGGGAGATAAAGACAGTTCAAGTTTTAGATAGGGAGGAAGACAGCACCTATACTATGGAGGTTGTGGCAGAGGACCGAGAGAACGCCTCTCTGCTTTCATCTGCTGTGGTGACCGTGCACATTCAGGACGTGAATGATAACACCCCGGTCTTGGTGGGCGATTACTCCTGGAAGTACCTGTGTACTCCGAAGTGGGAGGACCAGGCCCTGGCCATTGCATCCAATGACAATGATGGACCTCAGCACAGTGGCGTGCTCCACTTTGCACTCAAACCAGACCCCACCATACGGCGCAATTGGAAACTCACCCCTATCAACGGTACCCATGCAAATCTTTCCATGCAGACCAGTTACTTGACCCCTGAAGTCTACATGGTTCCCATTATAATCTCAGACAGTGGTTCACCCACAAAAAACACCCACATCAATCTCCCAGTAACCGTGTGCCAGTGCAATATAAGAGGGAACTGCAGGACTGCTGTCAAGGAGCTGCAGGGCATGCCCACTGTACAGTCTGCTGTTGGCATCCTCCTGGGCACCCTTGGGGTTATAGGGTTTATTCTCATTATCGTCTTCGCAAAGCTGTCTTATCAGAAACCGAAGCCTCAAAGCATCAGCAACCAAGACAGAGTGCCTTTGAAAAGCTCTGTCTAGATCAATCCAGTGGAGGACTATAAATGTACAGAATGGAATGAaatgtactgtgtactgtgggGCACAACACAGCTTTTGAGAGAGGtgatttttgttaataaattatcaaatgattaaattatgaattttaAAAGGCATAAATAGATCCTTTATTAAATGGAATGGTCTGCATCTATCTGCATTAATAATCTAAATCTTAATCTGACctccttttatatatatttttttacacaaaatatcaTGTTATCCATGAGTTCTGTATAAAGCAGGCTCAAGGTAATTGATCACTTTTGAGTTGATtgtaatagtaaataaatattgatcaacttaaaaaagaaaatatgtcgTGTAATTTACCATTAAACATTTCACTAGCTGTGTAATCACATCTTTAATGCAACATTCAAAACtgtctatttttaatgtaaagctgttattttttcctacagtaatacatttaaatttaatacattttgtcttcttgatatttca

Function

GO: NA

KEGG:

id description
K06810 CDH16; cadherin 16, KSP-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020483 True 2388 mRNA 0.45 13 22270714 22307475

Neighbor

gene id symbol gene type direction distance location
AMCG00020477 nae1,LOC107562218,LOC102793500 coding downstream 47015 22216569 ~ 22223699 (-)
AMCG00020475 NA coding downstream 55773 22196435 ~ 22214941 (-)
AMCG00020476 LOC107564548 coding downstream 86117 22165779 ~ 22184597 (-)
AMCG00020478 LOC106561981 coding downstream 106555 22145793 ~ 22164159 (-)
AMCG00020472 tk2,LOC106587284 coding downstream 142541 22121669 ~ 22128173 (-)
AMCG00020482 rrad coding upstream 13610 22321085 ~ 22324965 (-)
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding upstream 45471 22352946 ~ 22354526 (-)
AMCG00020492 LOC107685863,LOC107600353 coding upstream 166818 22474293 ~ 22512944 (-)
AMCG00020493 NA coding upstream 245373 22552848 ~ 22579832 (-)
AMCG00020494 NA coding upstream 276183 22583658 ~ 22588193 (-)
G63447 NA non-coding downstream 1187253 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 2014315 20255922 ~ 20256399 (-)
G63257 NA non-coding downstream 2634471 19634294 ~ 19636243 (-)
G63180 NA non-coding downstream 3192956 19077477 ~ 19077758 (-)
G63096 NA non-coding downstream 3833775 18436525 ~ 18436939 (-)
G63628 NA non-coding upstream 74889 22382364 ~ 22384918 (-)
G63629 NA non-coding upstream 76042 22383517 ~ 22391215 (-)
G63634 NA non-coding upstream 107860 22415335 ~ 22419743 (-)
G63680 NA non-coding upstream 238293 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 241940 22549415 ~ 22549727 (-)
AMCG00020471 NA other downstream 137977 22130842 ~ 22132737 (-)
G63464 NA other downstream 958109 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 1970871 20288570 ~ 20299843 (-)
G62961 NA other downstream 4230754 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4254852 17987181 ~ 18015862 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 133317 22440792 ~ 22466767 (-)
G63679 NA other upstream 236367 22543842 ~ 22544689 (-)
G63819 NA other upstream 847217 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2340528 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2384418 24691893 ~ 24698947 (-)

Expression


Co-expression Network