AMCG00020487


Basic Information

Item Value
gene id AMCG00020487
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22356174 ~ 22409493 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020487
ATGACTGCACGGGCCGTAAGAGATTCCCGCTTCCAAGTGGACTCAGAtggaaatataaaactgaagaGGGCTGTGACCCTGCATGAGGGACACACAAGCTTTGCCATCCACACCTGGGACTCTAACGGCAAGAAACTGAGCACCAGAGTCACACTGGAAAATGAGTCGGGAAGCCACTCTCAGCACCTCACTCCTGGTGACACTGCTGGGCAGTTTATGAAAGTACTGGCAATTGATAAAGATGATCCAGAGACGTACAATGGTGAGGTCGTGTATAGCATCGTCAGCCAGGATCCTAAATTGCCCAACAACAACATGTTTATGATCAACTCTCAGACTGATGCGATTAGTGTGGCTTCACCTGGACTCGACAGAGAGTACACTGTATCTGTACCTGAAAATAAAGTGGGCTATGAAGTGGTGAAATTACCAGTGACCGATAATGATGAGCCTCATACACCAGCCTGGAATACCAAATACACAATCGTCAAAGGAAATGAAGGAGGCTTCTTCAATGTCAGCACTGGGCCTAACAAGATGGAGGGCATTATTGAAACAATTAAGCTCATGGCTCATGCTGTTGCAGTGGGTGGAGGAAAAGCTGAGGATCCAATGGAACTCATTATTACTGTATCTGATCAGAATGATAACAAACCTGAATTTATAAAGGACACCTTCTTGGGCAATGCTGCTGAAGGATCACAACCAGgttTTCAGTTTATGAAAGTAGTGGCAATTGATAAAGATGATCCAGAGACGTACAATGGTGAGGTCGTGTATAGCATTGTCAGCCAGGATCCTAAATTGCCCAATGACAACATGTTTATGATCAACTCTCAGACTGGTGCGATTAGTGTGGCTTCACCTGGACTCAACAGAGAGTACACTGTATCTGTACCTGAAAATAAAGTGGGCTATGAAGTGGTGACATTACCAGTGACTGATAATAATGAGCCTCACACACCAGCCTGGAATACCAAATACACAATCGTCAAAGGAAATGAAGGAGGCTTCTTCAATGTCAGCACTGGACCTAACAAGATGGAGGGCATTATTGAAACAATTAAGGTCTGGGCTTCTGGATCTTGTGAAGCGGCTCCACCATGCCAGCCTGGTTTCAATTTGGACCATTCTGTCTTCAGAGTAGACCGGAGGCATCTGCCACAAGGCTGGATAGTGGGCAAAGTGACTTTTGATGACTGCACGGGCCGTAAGAGATTCCTCTTCATCTCTGAGGATTCCCGTTTCCAAGTGGACTTAGAtggaaatataaaactgaagaGGGCTGTGACCCTGCATGAGGGACACACAAGCTTTGCCGTCCACGCCTGGGACTCTAACGGCAAGAAACTGAGCACCAGAGTCACACTGGAAAATGAGTCGGGAAGCCACTCTCAGCACCTCACTCCTGGTGACACTGCTGGGCAGctcatGGCTCATGCTGCTGCAGTAGTTGGAGGAAAAGCTGAAGATCCAATGGAAGtcattattactgtatttgatCAGAATGATAACAAACCTGAATTTATAAAGGACACCTTGTTGGGAAGTGTTTCTGAAGGATCACAACCAGGTATTCAATTTATGAAAGTAGTGGCAATTGATAAAGATGATCCACTGACATACAATGGTCAGGTCACATATAGCATCCTCAATCAGGATCCTAAATTGCCCAATGACAACATGTTTATGATCAACTCTCAGACTGGTGCGATTAGTGTGGCTTCACCTGGACTCGACAGAGAGAACTTGAAGGCTGCTGACAATGCCCCCACTGTTCCTCCCTCCTGGTGTTTGATTATGAAGGAGGCGGCTCAGAGGCCAGCTCTCAACTCTTCTAGTTCAGGAGGTGACCAGGACTATGACTGCCTTAACCAGTGGGGTCCACGGTTCAAGAAACTGACCGACATATACGGTGGTGGATCAGACCTAATCAGAtctttCACTGTGGAATGTGTCAGatgcCTAACAAgcAATTCTGATGCATACCTGCCTATGAAACTGATATTCTTAGATGTGTGCAGTGAAGCATCCTGCCCATACTTGGAGACTGGAGACGTTAGTCAGCGAGGGGCGGCGCCGGATGACACGTCACTGAGTGAAGTCACCTGCGAGCGGCCGGCCGAGGCGCACTTTCGGTGGGACTACCTGTGGGCACGGAGCGCTGCACACCTGGGAACAAGCCGAGGGATTGATTTATAA
>TU79558
TGTGGCTTCACCTGGACTCGACAGAGAGaaattcAGAGTATAAACTGATCATCCAGGCTGCTGACACACAAGGACAAGGTCTATCACCACCTGCACTGCTCTCATCACTGTAACAGACAGCAATGACAATGCACCACAGTTTGTGAAGGACTCTTACACTGTATCTGTACCTGAAAATAAAGTGGGCTATGAAGTGGTGACATTACCAGTGACTGATAATAATGAGCCTCACACACCAGCCTGGAATACCAAATACACAATCGTCAAAGGAAATGAAGGAGGCTTCTTCAATGTCAGCACTGGACCTAACAAGATGGAGGGCATTATTGAAACAATTAAGGGGCTTGATTTTGAAGCAACTGACAAGTATACTCTACTGGTCACTGTGGAAAATGAGGTGCCATTTGCAACTCGCTTGCCAACAGCCACTGCTACAGTTATTGTACATGTGGTTGATGTCAATGAGAATCCAGTTTTGATTCTATATCAAAACACAATTGTCGCACCAGAGAACTTACCTGTTAATAGTGAATTGACATCATATACAGCTATGGATCCAGACACGGCAAGAATGCAGACTGTATGGTATCAAGTAGGGAGTGACCCTGCAGGGTGGCTGAATGTTAGTAAAGACACTGGGCTCATCAGAGTGAAGAGCCCCATGGACCGAGAGTCTCCAN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020487 True 2202 mRNA 0.47 15 22356174 22409493
TU79558 False 680 TUCP 0.44 6 22358828 22372760

Neighbor

gene id symbol gene type direction distance location
AMCG00020480 NA coding upstream 5768 22346354 ~ 22350406 (+)
AMCG00020481 NA coding upstream 9845 22334724 ~ 22346329 (+)
AMCG00020479 NA coding upstream 103923 22250662 ~ 22252251 (+)
AMCG00020474 ca7,LOC106561977 coding upstream 114726 22225901 ~ 22241448 (+)
AMCG00020473 NA coding upstream 158882 22190587 ~ 22197292 (+)
AMCG00020484 NA coding downstream 689 22410182 ~ 22425882 (+)
AMCG00020486 snai3,LOC106587174,LOC107667233,LOC107599746 coding downstream 21043 22430536 ~ 22431810 (+)
AMCG00020485 NA coding downstream 58030 22467523 ~ 22473932 (+)
AMCG00020490 NA coding downstream 134307 22543800 ~ 22554214 (+)
AMCG00020491 trappc2l,LOC107600366,LOC107730159 coding downstream 170604 22580097 ~ 22582459 (+)
G63589 fam96b,LOC106562058 non-coding upstream 1195 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 148143 22207708 ~ 22208031 (+)
G63477 NA non-coding upstream 716518 21638996 ~ 21639656 (+)
G63448 NA non-coding upstream 1271636 21084117 ~ 21084538 (+)
G63433 NA non-coding upstream 1775741 20563817 ~ 20580433 (+)
G63772 NA non-coding downstream 564385 22973878 ~ 22974091 (+)
G63784 NA non-coding downstream 658818 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 667408 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 676885 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 1440857 23850350 ~ 23897755 (+)
AMCG00020470 NA other upstream 213976 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 2719953 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 2753850 19597203 ~ 19602324 (+)
G63045 NA other upstream 4022142 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 4284123 18067787 ~ 18072051 (+)
AMCG00020505 NA other downstream 644305 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 660918 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1623544 24033037 ~ 24068457 (+)
G63939 NA other downstream 1642496 24051989 ~ 24055592 (+)
G64046 NA other downstream 2069342 24478835 ~ 24482114 (+)

Expression


Co-expression Network