AMCG00020489 (rnf166,LOC106587267,LOC106562062,LOC107685853)


Basic Information

Item Value
gene id AMCG00020489
gene name rnf166,LOC106587267,LOC106562062,LOC107685853
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22440792 ~ 22466767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020489
ATGATGGCGATGTTCCGCAGCTTTGTGTCGGGGACCCAGCACAAGCAACATCACCCGCAGCAGCCGCCGCCGCCGCAGAGTGGGGCAGCGGTGGCCGCCCCCGGGGAGAGCCTGGAGAGCCAGTACTCTTGCCCCATCTGCCTGGAGGTCTACCACAAGCCCGTCAGCATCGCCAGCTGTGGCCACACGTTCTGTGGAGAGTGTCTGCAGCCATGCCTCCAGGTGCCCTCGCCCCTTTGTCCTCTCTGCCGCATGCCTTTCGACCCAAAGAAGGTGGACAAGTCCTCCAACGTGGAGAAGCAGCTCTCCTCTTACAAGGCTCCCTGCCGTGGCTGCAGTAAAAAGGTGACCCTGGTGAAAATGCGGTCTCACATTTCCTCTTGCACAAAGGTTCAGGAACAGATGGCGAATTGCCCAAAATTCGTACCTGTTGTACCCACCTCACAGCCCATTCCCAGCAATATTCCAAACCGCTCCACCTTCGTATGTCCATACTGTGGGGCCAGAAACCTGGACCAGCAAGAGCTAGTGAAGCATTGCATGGAGAACCATCGCAATGACCCCAACAAAGTGGTGTGCCCTGTATGCTCAGCCATGCCCTGGGGAGATCCCAGCTACAAGAGCTCCAACTTCTTGCAGCATCTTCTACACCGGCACAAATTCTCCTACGACACATTTGTGGTGAGGGAAGAGAAGACTgaTTACAGTATTGATGAGGAGGCAGCGTTGCAGGCAGCCCTGGCACTCTCCCTGTCTGAGAACTGAACACACTGATCCCTCCGCCCTGATCCCCTCCGAGTCCATCATCCTTTGCACTGGGCACCTCCCTCCCCCGTTTACTGCTGCCAAGCACCTCTTTGCATTCCACACCATGCACCTTGGCCAGACAGCCATCTGTCCCCTCCATCCCTGAAGCTTCATGAATCAAGttagaattattattagttcTGTTATTTCCTTCTCTCTAAGAAGTGGAGGCAGCCATTGACAAAGGCTGGGTTATATAGCAATGCAAAGATGGACTGAAACATTTATATGGAAATAGAGATAACCAGTACATTAACTGAAGTACCCCGGTCTTGCACTCCTGCAGGtagttttgtttgtcattttattttgtgattgatGAGATTCTGCCGAGCCAACGTCCACTGGGTGATGAGCCACAGGTAGGGTCTGGGTGTTGACTCCGACAAGGCCGAGATGGCTCTTTTACTGTAGTTTATTTAACAGTACATGAATATTGATTGCAGATGGCATGCATAAAAGTCATGGCTACAACAGAGCACAGACAGAAGCTTAAGTAATCCAAAGCACTTCACATAATTAATGCATGTAAAGTAAGACcgcttttcttaaaaaaaaaaaaaaaaaaagtatccaGTGTGAATTCACAACATAGAGTAGGTTCACTTACTATAATCAATACAGATGGATGTTTAATTTTCGTTCTATTAAATAGAAATTAGTTGAGAAAATATCTTTGGGccaaaaagtgaaaataaggATATTTACAtaccaaatattttaatttacataccGCTGTAATAGGTGCATTCACCAtgtcattaataaaatgtaggTAGTAATTTGGTTTCACgtacagaaattgaattctgaAAAATCAGACTTTCAGATGAGAGTTGGGGGTGAGTGAGTGTTTGGATGTGGGCGATGACTCCGCAGAATGTGGTGTTTTCTCAGATTGCTTTGATTTTTCTCTAATTGGACCAAACTGCAGTTTACGAAATCCATGAATTGGGCATAGCATGCTTTAAAAGTGGTGATCAAACTCCAGCCTTCATCTGTACCTTCCTGCTGTTAGGATTCAATACTGAGCACAGAGAGGGAAGCCAAATATTGGAATTTGTTgtgaataacaaacaaaatcttaGGAAAATCAATATCCCTAGATATATATACGCTTCTCACTTTCcctgttgttctttttcttttttcccttttttataaGGGTTCTTGTGAATAATTGCACTTAACTGCATTTTCTACATGAGCAAAGTGTAgtacttttcttgttttataacTAACAAAATGAATAGCAAAGCATTTATTCTTCATACTGCTGTTACCTGTTTAACTTGCTACAATACTATTTTTTACAAAGCATCAGATAAactatatttttgaaaacatttcagtttcaaatgGTGCACTAATAACAAGTCATACGCCTTTAACAAATAGGGGGCGTTGATCATTTCACATTCTTTTTACATAACCTTGGGTAATGTATTGCTCAATCAAGCAGTTTTCCACCTGGTGGGATGGCTAAGAGACCTTTGTGAAcctaaaaaaaatacttaatatgtAAGCAAGGTGGTGTGTAATGACAGGGCTCGGGCACTAGAGGGCCACCTTAGTGAAAAAACATCCTTTTTTTACTGAGGATTctcaaatgtactgtatttctgAAATAGTTACATGCACCAGGGTCTGTCCTAAATCCATTTATTTAAGTTtgcaaattttaaaaatacacacacatacttattGTTATAAAGCCCTGGGActtttctatttgtgttttgctaaggtctctcttttttttttttttttt
>TU79666
GGTGGACCCACAAGTGTCCTAGTAAAGTAAAAGAAGGCAAGACAAATTGTACTTAATTCATTCTTCTAAGACAAGgaTTACAGTATTGATGAGGAGGCAGCGTTGCAGGCAGCCCTGGCACTCTCCCTGTCTGAGAACTGAACACACTGATCCCTCCGCCCTGATCCCCTCCGAGTCCATCATCCTTTGCACTGGGCACCTCCCTCCCCCGTTTACTGCTGCCAAGCACCTCTTTGCATTCCACACCATGCACCTTGGCCAGACAGCCATCTGTCCCCTCCATCCCTGAAGCTTCATGAATCAAGttagaattattattagttcTGTTATTTCCTTCTCTCTAAGAAGTGGAGGCAGCCATTGACAAAGGCTGGGTTATATAGCAATGCAAAGATGGACTGAAACATTTATATGGAAATAGAGATAACCAGTACATTAACTGAAGTACCCCGGTCTTGCACTCCTGCAGGtagttttgtttgtcattttattttgtgattgatGAGATTCTGCCGAGCCAACGTCCACTGGGTGATGAGCCACAGGTAGGGTCTGGGTGTTGACTCCGACAAGGCCGAGATGGCTCTTTTACTGTAGTTTATTTAACAGTACATGAATATTGATTGCAGATGGCATGCATAAAAGTCATGGCTACAACAGAGCACAGACAGAAGCTTAAGTAATCCAAAGCACTTCACATAATTAATGCATGTAAAGTAAGACcgcttttcttaaaaaaaaaaaaaaaaaaagtatccaGTGTGAATTCACAACATAGAGTAGGTTCACTTACTATAATCAATACAGATGGATGTTTAATTTTCGTTCTATTAAATAGAAATTAGTTGAGAAAATATCTTTGGGccaaaaagtgaaaataaggATATTTACAtaccaaatattttaatttacataccGCTGTAATAGGTGCATTCACCAtgtcattaataaaatgtaggTAGTAATTTGGTTTCACgtacagaaattgaattctgaAAAATCAGACTTTCAGATGAGAGTTGGGGGTGAGTGAGTGTTTGGATGTGGGCGATGACTCCGCAGAATGTGGTGTTTTCTCAGATTGCTTTGATTTTTCTCTAATTGGACCAAACTGCAGTTTACGAAATCCATGAATTGGGCATAGCATGCTTTAAAAGTGGTGATCAAACTCCAGCCTTCATCTGTACCTTCCTGCTGTTAGGATTCAATACTGAGCACAGAGAGGGAAGCCAAATATTGGAATTTGTTgtgaataacaaacaaaatcttaGGAAAATCAATATCCCTAGATATATATACGCTTCTCACTTTCcctgttgttctttttcttttttcccttttttataaGGGTTCTTGTGAATAATTGCACTTAACTGCATTTTCTACATGAGCAAAGTGTAgtacttttcttgttttataacTAACAAAATGAATAGCAAAGCATTTATTCTTCATACTGCTGTTACCTGTTTAACTTGCTACAATACTATTTTTTACAAAGCATCAGATAAactatatttttgaaaacatttcagtttcaaatgGTGCACTAATAACAAGTCATACGCCTTTAACAAATAGGGGGCGTTGATCATTTCACATTCTTTTTACATAACCTTGGGTAATGTATTGCTCAATCAAGCAGTTTTCCACCTGGTGGGATGGCTAAGAGACCTTTGTGAAcctaaaaaaaatacttaatatgtAAGCAAGGTGGTGTGTAATGACAGGGCTCGGGCACTAGAGGGCCACCTTAGTGAAAAAACATCCTTTTTTTACTGAGGATTctcaaatgtactgtatttctgAAATAGTTACATGCACCAGGGTCTGTCCTAAATCCATTTATTTAAGTTtgcaaattttaaaaatacacacacatacttattGTTATAAAGCCCTGGGActtttctatttgtgttttgctaaggtctctctttttttttttttttttttaagacttttaTTAAGTAAGGTGCATCACTACTATTGGGATCCTTGCTGgggaatttattttcttgtgattTGAACCACACGTCTGTAAGACCTGAGGAAGTGTCGTGATGGCCTTCGCAATCCTAGAGGGTTCAATCAAGGAAAGTTGTCTGGAGTGAGTTCACCTAAATTGGGCAGCAGTTGTCTTTACTGAGCAGGCCCTCAGTGACCAGGTGGCTCGCCCAAGCTAATCTCTGTCTTCCTGGGGTCAATAGCTCTGAAACGTGTCAGTTGGGTTATCTGGGTCAAATGATGATGTGGATGGTGGCTTAGCTTGGAGAGCTCTTGGCTGCCCTCATTCCTCTTTCCACATGGCTGTGGGCTGTGTGTGCTTCAGTTTGAAATAGTGAGTCTGGTGCTCCACACCTaagcaaacataaatacacagatacaaTGTTTATTTCTGAACTTCATTAGCGATCCAGTGCCTATGGAATCCTGTCCCAACAGTTCAAACACGTCAGCTGCCAAGCAACCAGCAATAACCTCGCCGTCTTTCATTACCTCTTCATGTAATACGTGTAAAGCAGCCGTGACTATGACAGCCAGTTCAGATCAATAAAGTTCTGTTGTCCttgataaaatatgtaatatatcgCTTCCTTAATTAGGCAAAACAAACGGAGAAGGTGAAAAATTAGTTCATAACTTTCCTATTTGCAGTTACACTGTATATCAGGAAATACCAGGAGGCTGGTTTTTATTAgtcatttttgatttattttatttcaatactgAATTGAAATATGTGTGACTTCTGAATTTGTGCAGAGCATGCTGTTCAACTATTTGTCAGTTGTTCAGTGAGAGCATTTACTTGAATGCAAATGCTGTTGAAACATGTATTAATAGCTTGCAATTAATGTCAGTTCTGGGGTTTGCTGAGATTTATTTGCTGATCAACCATACGTGTAGAAGAGTGGTTTGTTCTGCTTGAActgtaagaatatatttattttaaagaagcagTAAGTCACCGAGAGGACTTACAAACCATGTGAATATATGGCTTTGAGTTACTTCAAGAATAACCTTGTCAAgtaaacaagcaaatattttaatatatttgcatcTGAAAGAGGGAAGTTTGAAATTGTATTAGTACTTTGTGCACGAGTTTGTCCGTGCTAGTAACAGAAAGGGAAGAAATATGTCTACTgattaatatttgtgtttaaagtCTTCCTCTTAACTTTTATTACAAtagctaaaataaaatggttttatgTTTAGACAGGATTCCATTGGATGGAACAGTGTTGGCTTCTTACCAAACAGTCTGTTCATCAACTTCCTAGTTAATATGGCCAAACATATGCAGACAATTGCCCCTCTGTCAAGCTTGCAGCTTTCATGGCCACTGTGATTCATTACCTGCTCAAAAAACACCTTTAAAGGGGCATTGTTTTACTCCATACAGAATTGAGCAGACATATGAATCATTAGGTACATTTTATAGCTAGGATAAACTGAGggctttaaatgtgtttctcatttaaaattgtaaactgGCAAGGTTAATAAGAATCTGAACTATCCTCACACTTTTATCCTAAGAAATGAATTTATTATCAGTACACCAGCATTTCTGTGTTTGCTATCACTGAAAGGCAGTAAGTGTTAAAGATTACAAAATTCGgataaatgttcaaatgttaagcaaattaaatctagaatacaaagaaaagaaggaaactGGAGAGACATGAATGTCAAAAGGCTTTTTGACACGTTTTTTCATTACTAAATTTAGGAATCGCATACCTATGATAATGGTCTCTACTAACCAGAATCAAAGATTTgcttcaacatttttttttttcctttctcaatTTTTTGGGCTAATGGAGTATTatgtgaaagtatttttttaaatatcatattGTGGGGCTTGGTAATATTCTCAAATAGATTCTGAACTGCTTATTACCAGGGTAGATATCATTGTATCAGAGATCACTAACATGAggtcatttgtaaatgtattattattctgcttCATCAGATAAACAGATGGAAGACTTGGAAACCAAAATGTAACTCAATTTACAATTTCAGCAAAGTGATTCTTTAGGTCGGGCTATGTTGTTTTGAACAAAAGAATTGTACTTGTTGGCTTTTTATTGCTGTGCTGTGAAAGTAAGTTTTAGGGGGATAAAAGCAAATAGTTAAAGTGAGacattttctgtactttgaTGTACAATATCTTTGACTtataaaacaagtaaacatTCAGAAATACATACGAAATCAATCGTGtattaacaatttatttatatataattatttttgtagttttttttttttcattgttatagCAGCTaatttctgtctgttttattaaGGTAGTGGTAGAAAATTGAATGGGGGGGGCAGTTTATAACCAGTAAGAGTGAGCATCTTTCCCCAGTCTCACACTTTGTAAACCTGCTGTATGCCCCTCTGATTAGATTCTTCAAATGTCATGATCACCTTTGAGTgtaggtgtgtatatatacatatatatttctttgtatgtatatatacatatataagtatgtatgtttgtatgtatatactatatatgtgtgtgtactgtatatacatttgttttcagtaacGTGTGCACaactctttattatttatttttgacttaCTGAATTATCAGTAATTTTTTGTatcctgcatttgtttttgtttggtttcttttgcTCTGTCACTCACATTGTATCCTAGCCATTACAGCAGCTGAATGTCCACAAGGGGGCACAGCATTTCTGTGTTGAGCTGTAGGCTGTGCTAGTCTCCTGACCTCACTGGAAACGGAGACCACTGACACTGTAGTGAAGCCCCATTTCGCATGACAATTTTATAAAGATATCGATACAGTGGCTCTGAGCTTATGCATTGAACAGGATTTATTGAAAGAATCAGAAAGCATATGGCCAGGTCAAGAGTCACCTTCACTGCCCACACATTACTTTTATGTCCACTGAAGATATTCCCAGGGCTATACTATACTCGCTTTGACTAAAGTGATGTcaatgtaaactgtaaaagCATAGCCCAGTGTTGTATTTAAGAAGCTGCCTGCAACTGTTGCGCTCTCGTTCACTGACCTGTCTTCATTACCATGCCTTTCCATccccttgtatttatttatttattttgtaacttgCATACTGCACCTTATAATGAATTCAGATCTTGCCTGTTGCGAAAGCCCTTACAGAAGCTGCATTTTAACACAACACTGTGCTTCACAGCAATGTAAAAATAGTTTGGGAGAATAAGGGCCACATGCAGCAATCAGTCAGGTTAACCAGCAGAGTCGAGTGTGACCTCTCTAGGCCAAGAAAACGGCACTGGCTGCAGTTCCAAATGTAGGGACTGTGCATTATCTGTGATTTATgcatacaataatattataaaaaatgaaacattttgaagTTGTTACACTGTTTGAGGTTTAATAAAAATAcctttattctgt

Function

symbol description
rnf166 Predicted to enable metal ion binding activity.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020489 False 2578 mRNA 0.43 6 22444305 22466767
TU79666 True 5467 lncRNA 0.37 2 22440792 22446550

Neighbor

gene id symbol gene type direction distance location
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding downstream 86266 22352946 ~ 22354526 (-)
AMCG00020482 rrad coding downstream 115827 22321085 ~ 22324965 (-)
AMCG00020483 NA coding downstream 133317 22270714 ~ 22307475 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding downstream 217093 22216569 ~ 22223699 (-)
AMCG00020475 NA coding downstream 225851 22196435 ~ 22214941 (-)
AMCG00020492 LOC107685863,LOC107600353 coding upstream 7526 22474293 ~ 22512944 (-)
AMCG00020493 NA coding upstream 86081 22552848 ~ 22579832 (-)
AMCG00020494 NA coding upstream 116891 22583658 ~ 22588193 (-)
AMCG00020495 cbfa2t3,LOC107730156,LOC107728039,LOC107685856 coding upstream 135173 22601940 ~ 22616819 (-)
AMCG00020498 NA coding upstream 310970 22777737 ~ 22789084 (-)
G63634 NA non-coding downstream 21049 22415335 ~ 22419743 (-)
G63629 NA non-coding downstream 49577 22383517 ~ 22391215 (-)
G63628 NA non-coding downstream 55874 22382364 ~ 22384918 (-)
G63447 NA non-coding downstream 1357331 21083262 ~ 21083461 (-)
G63346 NA non-coding downstream 2184393 20255922 ~ 20256399 (-)
G63680 NA non-coding upstream 79001 22545768 ~ 22546057 (-)
G63681 NA non-coding upstream 82648 22549415 ~ 22549727 (-)
G63682 NA non-coding upstream 83180 22549947 ~ 22550167 (-)
G63683 NA non-coding upstream 84753 22551520 ~ 22551798 (-)
G63684 NA non-coding upstream 85233 22552000 ~ 22552303 (-)
AMCG00020471 NA other downstream 308055 22130842 ~ 22132737 (-)
G63464 NA other downstream 1128187 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 2140949 20288570 ~ 20299843 (-)
G62961 NA other downstream 4400832 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 4424930 17987181 ~ 18015862 (-)
G63679 NA other upstream 77075 22543842 ~ 22544689 (-)
G63819 NA other upstream 687925 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2181236 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2225126 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 2287115 24753882 ~ 24776409 (-)

Expression


Co-expression Network