AMCG00020493


Basic Information

Item Value
gene id AMCG00020493
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22552848 ~ 22579832 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020493
CCGGCTGTCATGTGACTCTTTTCCGTGTTCACTTCACCAATGTAATGGGTTGCAAAGTCAGAGAAAGTTTTTTAATTGCGCTAATTACCCGATGCTGCTGGGCAGAGGCGCTCCAAGATGCTCCAGCGCCAAACATTATCATCATGCTTATGGATGACATGGGATGGGGTGATCTGGGGGTATTTGGCCATCCCTCGAAGGAGACTCCAAATATAGACCGCATGGCTGCAGAGGGAATGCTGTTCCCCAATTTCTACACAGCTAATCCCCTCTGTTCTCCATCCAGAGCTGCCCTGCTGACCGGCCGGCTGCCTGTCAGGAACGGGTTCTACACAACCAACGCACATGCCAGGAATGCTTACACCCCCCAGGAGATAGTGGGGGGGATCGACTTGGACGAGATTCTCCTCCCAGAGATCTTGAAGAAGAAGGGCTATGTCAATAAGATCATTGGGAAGTGGCACCTTGGCCACAGGCCGCAGTTTCTGCCCTTGAAGCATGGCTTTGACGAATGGTTCGGAGCCCCCAACTGCCACTTCGGGCCCTACAACAACACCTACAGGCCCAACATCCCTGTCTACAACAACTCCCAGATGGTGGGAAGGTATTATGAAGAATTTGGGATAAATGTAAAAACTGGGGAGTCGAATCTCACACAGATTTATCTTGAGGAGACTCTCCAGTTTCTTCGGCGCCAGTCCGTCTCTGGTGCTCCATTCTTCCTGTTTTGGGCAATGGATGCCACTCACGCGCCAGTCTATGCCTCCAAACCTTTCCTGGGGAAAAGCCAGAGGGGACGTTACGGTGATGCAGTGATAGAATTGGATCACAGCGTGGGACTCATTCTGAAGGAGCTGCGGACGCTGGGAATAGCAGAGAACACCTTTGTGTTTTTCACCTCAGATAATGGAGCTGCTTTGATGTCGGGCCCTAAGCAAGGGGGCAGCAATGGCCCATTTCTCTGTGGGAAAGAGACGACGTTCGAAGGGGGAATGAGAGAGCCAGCGATTGCATGGTGGCCAGGACACATAAAGGCTGGGCAGGTGAGTTACCAGCTGGGCAGTGTGATGGACCTTTTCACGACCAGCCTGTCTCTAGCAGGGCTGCCTCCCCTCAGCGACAGGGTCATTGATGGCCTGGACCTGTCCCCAGTCCTCCTGCAGAACACTGTCATCGACCGTCACCAATCCCATTTCACACCCAACAGGCCCATCTTCTATTACCGGGGCAACGAGATGATGGCAGTGAGGGTGGGTCTGTACAAGGCACACTATTGGACGTGGAGCAACTCATGGGAGGAGCTTATGAAGGGGATTAACTTCTGTCCTGGGCAGCATGTGACTGGAGTGACTACTCACACCCAGCAGGAGCACACAATGCAACCACTCATCTTCCACCTGGGCCAGGACCCTGGAGAGAAATACCCAATCAGTGTCCTGAGTGAGGAGTACCAGGCAGTGTTACGGCACGTGACTGCTCTGGTGAACGAGCACAGGAAAGCCCTGGTGCCTGGAGTCCCACAACTCAACATGTGTGACCTGGCTGTAATGAACTGGGCTCCTGAAGGCTGTCAGCAGCTGGGCAAGTGTCTCAAGCCCCCGGAGTCTGCGCCGTGGAAAGATATCTGTCCAGTCCTGAAAGACCCCAAAGTACTAAATGCTGCTATTGACTTGTTTGAGGAGCATGTGAGGCAGACCTACCCTCATGTCGAATTGATTGTGGGTATGGATGCCCGTGGCTTCTTGTTTGGCCCTCTCCTTGCCCAGAGATTGGGGGTGGGTTTTGTACTGGTCCGCAAAAAGGGCAAATTGCCCGGCCCCACAGTGTCTGTAGCCTATACCCTGGAGTATGGACAGGCAGAAGTGGAGATCCAGGAGGATGCAGTCAAAGCAGGACAGAAGGTGGTGGTCATTGATGATTTACTTGCTACTGgagGGACTCTGTGCGCAGCTTGCGAACTGCTGAAGAAACTGAAAGCCGAAGTTTTGGGCTGCATGGTGTTGATCGAGATGACTGATTTGAATGGGGCAGAACGACTCAAACCAAATCCATTGTTCTCTGTGGCACAGTTCTAAACTCCAGATTTTATTCCATGAACATGTGCAACTGATATACAATTGCCAATTACCTAAGCACATTTTGCAATGCTTATGTTCagaatgtcatttttttgtgttttgtttacttgtgtATTGTGATTCTTCATGATATgaacaaaattacaatattgtaaattaCCTTTGAAATAAGGCACTTAACACATGGATAATTTAGTGGtatacttttatttcttttggTATCATTTGATTCAGAAAGTGCTGTCATTTTCACACCACCTTATgtgataaattaaatgaaaatcttACTCTAGAAACCTGATGGGGAAAAGATGGGTAAATGCccaataaaagggaaaaaaaaaaaaaaaaaaaaaagtgcctttCCCTCAACTCTTGGATTTAATCCATTATTTAACCAGTGCAATGATAAAGTCCTGGCTGGAGGAAGTACTCAGTTGTAGggttaattttttattttttaataaatgaaaattgtAATCTGGGTAATTTTGTTCAGTGTCCACTACtcttaaaacttgtttttggACTATTGAAgtcttaaaaaaagtaaatgtatgttAGTCCAAATgatatttgtgtacatttatttaaaagcaataaagtaaaaaaaaaaaatcacattcacaAATTCTTGACAAGTAGAATAATGAGCAGGTACTACAGGTTTCTCTATCTTTGGAATATGCAGTTTTGTGAATCCGGTGTACTAAATCTAGAAGGGCACTGATAAAACTGCTACCAACCCACCTCTAGCAGAAGTGGCAACACTCATGTCCCTACTGAACAGCAGTTGGTatattcaaagtataatactaTAAATTGTTTTGTCCAGTTATCGATTACTTATTTCTCCCTCTTTTGACAAACCCatgtaaatatacaatttaaatagtttttgtaaGCAGCATACTACTTACATGTTCAACAGCCTGGTCTTTTGCAGGGAGAAAACTAACCCCATCTTAAAAATACTTCCAATCCTTCACACATTTTTCATCTTAATATGATGCAGGATCCTTCAGTGGAGATTGCACCATTTAAGGAATATAACTAATCTATTCTCCACAATGACCACTAGATTAATGAAGGTTATGCTTTTTATTCCCCACAGAAAAGTTGAGAAGTTTTCTTGTCCTTATGTAGGAAGTGAAAATGAATCTCAAGATACACAACACTTTCATACCTAAACAATTGTACCCAGGatgttgaattaaaaacattaaaacattcatcAAGGTAGTGTTGTAAATGAAACAATGTAGAGTATCCGTTTCattgttaataaaaaacaaattacatactgcttaaaaaaaaaaacaccctcaaTAAATTTAAACTAAGTTTCATATTCCACACAACAGACAAATATGACACTAGACAAAATATCCTTCACTAATCCCTGCTGCTAACTAAAAAGCCATCATTTCAATCAGTAAGAGATTAAGCTAATTCtagtggaatgaaaaccagaaaactTCTTGGGTGTTTAAATTggaacaattaaacattttaaaattgcacttttgtaaacaGTTTTGATTTCCAGAGATTCAGAGTCTCTCCTCTACTCTGGTCTTCTGATTGAGTTTCTCCACCACCATATTAAGGTCCATGGTCTTGTTTAGCTTCAGGTAGAAGTCTTTTCTGATTGGGAGAATTGTCAGCCAATCCGGAGTCAGCTCTGACAGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01132 GALNS; N-acetylgalactosamine-6-sulfatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020493 True 3770 mRNA 0.44 18 22552848 22579832

Neighbor

gene id symbol gene type direction distance location
AMCG00020492 LOC107685863,LOC107600353 coding downstream 39904 22474293 ~ 22512944 (-)
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding downstream 198322 22352946 ~ 22354526 (-)
AMCG00020482 rrad coding downstream 227883 22321085 ~ 22324965 (-)
AMCG00020483 NA coding downstream 245373 22270714 ~ 22307475 (-)
AMCG00020477 nae1,LOC107562218,LOC102793500 coding downstream 329149 22216569 ~ 22223699 (-)
AMCG00020494 NA coding upstream 3826 22583658 ~ 22588193 (-)
AMCG00020495 cbfa2t3,LOC107730156,LOC107728039,LOC107685856 coding upstream 22108 22601940 ~ 22616819 (-)
AMCG00020498 NA coding upstream 197905 22777737 ~ 22789084 (-)
AMCG00020502 ankrd11,LOC107730140,LOC107561454 coding upstream 210621 22790453 ~ 22824939 (-)
AMCG00020504 NA coding upstream 337540 22917372 ~ 22930992 (-)
G63685 NA non-coding downstream 265 22552382 ~ 22552583 (-)
G63684 NA non-coding downstream 545 22552000 ~ 22552303 (-)
G63683 NA non-coding downstream 1050 22551520 ~ 22551798 (-)
G63682 NA non-coding downstream 2681 22549947 ~ 22550167 (-)
G63681 NA non-coding downstream 3121 22549415 ~ 22549727 (-)
G63799 NA non-coding upstream 482226 23062058 ~ 23068200 (-)
G63791 NA non-coding upstream 488487 23068319 ~ 23070302 (-)
G63800 NA non-coding upstream 490569 23070401 ~ 23070820 (-)
G63829 NA non-coding upstream 591976 23171808 ~ 23182107 (-)
G63834 NA non-coding upstream 614312 23194144 ~ 23194529 (-)
G63679 NA other downstream 8159 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 86081 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 420111 22130842 ~ 22132737 (-)
G63464 NA other downstream 1240243 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 2253005 20288570 ~ 20299843 (-)
G63819 NA other upstream 574860 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2068171 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2112061 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 2174050 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 2531278 25111110 ~ 25119596 (-)

Expression


Co-expression Network