AMCG00020494


Basic Information

Item Value
gene id AMCG00020494
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22583658 ~ 22588193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020494
ATGGCGGAGGAGAAACACGACACTGACGAAGGTCTGGGTCTTCTGGACGGGGAGTATCCGGGGGACCACAGCGTGGAGGACCCTGAGTTGGAGGCTATCAAAGCCAGGGTTCTTGAAATGGAACAGGAAGCTGAGAAACTAAAGGAGGTGCAGTATGAGGCTGAGAAACAGCTCATCATGAGCCCACAGACAAGTTTCTTCTACCCAATGACGCATGAAGAAAAGATTGATGCAGATAATCGATCCGTCTACGTGGGAAATgtgGACTATGGTGCAACAGCAGATGAGCTGGAAATTCATTTCAATGGCTGTGGTCCAGTTAATCGAGTGACCATCCTTTGTGACAAATTCACTGGTCATCCCAAAGGgtTTGCATACATTGAGTTTTCAGACAGGGATTCGGTGAAGACGGCTATGGCTCTTGATGAAACTTTATTCCGGGGGAGAATCATAAAGGTGCTCCCAAAAAGGACAAACATGCCAGGGATCAGCAGCACCGACCGTGGCAGTCACCGTGGCAGCCGCCCTCGGGGACGAGGCTTCCGCTCCTCCAGGTACAACAGTGGTTTTCAGGCCAGGTACCGTGGCCGCTCGTCCAGGTCAGTACTGCAGCCCCCCACACTCTCTCCAGCAGGGGGCTGCCATGCAGGAAAGAGGTCCTGGGGCAATCTGGAAAGCTGTGACCAAGCTGCAAAAAGGCACTCATGTCTTCTACTGATAAATCCACTCACCGATGACTCCCATTCACTTTCAAGCAAA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020494 True 759 mRNA 0.52 6 22583658 22588193

Neighbor

gene id symbol gene type direction distance location
AMCG00020493 NA coding downstream 3826 22552848 ~ 22579832 (-)
AMCG00020492 LOC107685863,LOC107600353 coding downstream 70714 22474293 ~ 22512944 (-)
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding downstream 229132 22352946 ~ 22354526 (-)
AMCG00020482 rrad coding downstream 258693 22321085 ~ 22324965 (-)
AMCG00020483 NA coding downstream 276183 22270714 ~ 22307475 (-)
AMCG00020495 cbfa2t3,LOC107730156,LOC107728039,LOC107685856 coding upstream 13747 22601940 ~ 22616819 (-)
AMCG00020498 NA coding upstream 189544 22777737 ~ 22789084 (-)
AMCG00020502 ankrd11,LOC107730140,LOC107561454 coding upstream 202260 22790453 ~ 22824939 (-)
AMCG00020504 NA coding upstream 329179 22917372 ~ 22930992 (-)
AMCG00020503 NA coding upstream 350604 22938797 ~ 22944614 (-)
G63685 NA non-coding downstream 31075 22552382 ~ 22552583 (-)
G63684 NA non-coding downstream 31355 22552000 ~ 22552303 (-)
G63683 NA non-coding downstream 31860 22551520 ~ 22551798 (-)
G63682 NA non-coding downstream 33491 22549947 ~ 22550167 (-)
G63681 NA non-coding downstream 33931 22549415 ~ 22549727 (-)
G63799 NA non-coding upstream 473865 23062058 ~ 23068200 (-)
G63791 NA non-coding upstream 480126 23068319 ~ 23070302 (-)
G63800 NA non-coding upstream 482208 23070401 ~ 23070820 (-)
G63829 NA non-coding upstream 583615 23171808 ~ 23182107 (-)
G63834 NA non-coding upstream 605951 23194144 ~ 23194529 (-)
G63679 NA other downstream 38969 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 116891 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 450921 22130842 ~ 22132737 (-)
G63464 NA other downstream 1271053 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 2283815 20288570 ~ 20299843 (-)
G63819 NA other upstream 566499 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 2059810 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 2103700 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 2165689 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 2522917 25111110 ~ 25119596 (-)

Expression


Co-expression Network