AMCG00020498


Basic Information

Item Value
gene id AMCG00020498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22777737 ~ 22789084 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020498
GCACTGCCTTGCTCAGCGCGGActcactgctgtgtttgtggACTCATGCACTTCATAGAGAGGATGACAAACCACAGCACCGGAGGCTTTGTCTGTAGCTCTTGCTCATCCAGTAAGATAAACGATCGGCATGCAGGCTGTGGCAATAGCAGGTGAGAGCGGGAGGACACCTCCCCCAGCAGGGCTGCGTTTGCATGGAGACCTCCCCTCTCGGAGTTGGACACAGATGTTTCCCCAAAGCGCCTTCAAACGCTTCCCCAATGAACAGCTGCGCCGCCAGCACACTACCTCCCCGACAATGGACTTTGAAAGCAGGATTTCTCCTCTGATCGGAGGCTTTGGACGCTACAACCGGCTGCTAGCTGTTTTCACTTGGATCCCAAACTTTGGGGTTGCGTTAAATCTCCTTTCCGAGTTGTTTTTCACTGTGATTCCCGTCTCCTACCACTGCAAACAGGACACGTCTTTGCTCCCCGCCGCTTTCCAGCACCGAAACCTGTCGGCGCTGCAGATCCTGAACCTGACCATCCCGTGGGTGCCGGGGTCCGGGCGCAGCCGCTGTGAGCTGTACCGCTACCCCGCCAACTACTCCCAGCTCCCGGAGAAGCTCCCGGCCGAGGTGGTGCCGTGTACCCGGGGATGGGAATACAAACACACGGCGGGGCTCCGCAACAACTTCGTCACGGAGTGGGATGTGGTCTGTGAGAGCTACTGGAAGGTCCCTCTGGAGCACGTCTGCTTCACGATTGGCTGGATTTCAGGGTATATCATTCTGGGTTATGTATGCGACCGGCTGGGACGGCGGCGAGCGTTCCTGCTATCGACGGCGCTCGCAGGCTTCATGGGGGTGTCGGTGTGTCTGGCCATCAGTCCCATCATGTTCCTGTTGCTGCGGCTCTCCCAGGGGGCCGGCCTGGCTGGGATCTTCCTGTCATCGTACATAACCAGACTGGAGATTTGCGACCCGCCCCGCCGCCTCATGATCACTATGATTGGTGGGTTCTTCGGAGTGTGTGGGGAGCTGCTGTTGCCGGGGCTGGCGGTGCTGTGCCGTGATTGGCCAGTCTTGCAGGCCGTGGTCACCATtcctctcctgctgctgctttctTACTTGGGGTGTGCCACGGTATTCCCAGAGTCCATCCGCTGGCTTCTGGCCACTCGGCAGATCCCCCAAGCCAAGAGAGCGCTACAGGACTTCTCCTCGCGCAACGGCGTGTCCCTGAGTGATGAGGTCTACCCCTCGGAGAACCTTCTCTCAGaGATTGACGTGGTGTACACTGAAGACTTTCAGCCTCGCTTCCACAACGTGTGTGAACTGGTCAAAACACGAGTCATCTGGAAAAACTGCCTCATCCTGGGCTTTACTGGGTTCATCGGCACAGGGATCCAATACTGTTTCACGAGAAACCTGCTGAGTTACCATCCACACTTTTACTTCAGCTACTTTCTGCGCGTGCTGTCCGGGGGGCTGGCCTGCGTGTTACTATGTGTTACGGCAAACCATTTTGGGCGGCGCGCTGTCCTGCTGCTGTCCTCCATCGTCACCGGCATGGcctccctgctgctgctggcgcTCACCCAGTACCTGATGGATGGCTTGGTCCTGGCCCTGTCTATTGTGGGGCTCCTGTCTTCGCAGGCTGTGGCCATGCTCAGTGTGTTCTTCGCGAGTGAAGTCATTCCCACTGTGATCAGGGGTGCGGCCCTGGGGCTGATCTTAGCTGCAGGCTGTGTTGGGAAGGCAGCCTCGTGGCTGATGGAGCTGCAGAACAACGGCGGCTACTTCCTGCACCACGTGGTGTTCGCCTCCTTCGCCGTCCTCTCCGTGCTGTGTGTCATGCTGCTGCCAGAGACCAAGCGCAAGCCCCTGCCCGACTCCCTGAAGGACGGCGAAAACCAGCGCCGACCCCCGCTCTTCCTGTCCCGGGCCGAGCATGACAACCTGCCCCTGCTGCAGTGCCGCTCCAAGCCCCTGGAGTACAACCCCGACAGCTACTCCCGCCTCGTCACCGCAACTAAGAAGATGCTTTCCAGTGACACCCTGCCCTTTACAATGACACGCCCCCTCCAAGCTACCCTGCTCAATCACAACGGTGCCACAGAAGGTGGAGTGGACAATGAGGCTCTGCATGAGGACTCCTAAGCCTGTTGtgaacttctctctctctgctgcttgATCATGTACAATTTAAGAGTCAGCCAAATCGTATACAAGCCACTGAGTCTCTAGCACTCCTTTTCtaactttgaaagaggggtcggcagtgaaaaaaaacaacaactgggGACTATTGGTTGTAACTTGTGACGCCACAATAGCAATGTTGATGGGGTTttcatgtaaatgtactttgagcTCCTATAGTTCCAAAGACTTAGTGTATCACAGGCTCTACAAACTTAAAGGCCGTCCTCAGTTCTTCACCCGCAGGCTGTTAGCTCTCCTGTGCTCTACTGGAGTTGGGAGGGagctgagaaaatgtatttgtgtgccTTTATTATGTGTTGGCCTTCAGTTTCCGCTTTTGAACGTTTCATGTTACTGAGTACCAGAAGTGTTTTCTTCACTGTTGTTCTGCTTGGGTTCTGGAGAAGCTGTGATCTCTGGTGTGATCGGTGTGGAAGATTATTTCCTTGCACACTTCTTTCCACaactgttgaaatgtttttgcacaATGTATGATTTTTCTCATTGTACTGTAGCGAAGACTATAAAATGAAGCATCGGACATGTTACCATTTTTAAATACCTCGCATATTTCACTCTACATGTGTCATAATGTGCTTCTGTTActattgtttgtgtattgttttaaaaatggtacCATTTTCCAAAGCTAAACATCCTCAAGCTGCGCCAGATGGAAACAACATCTGACAGGGTGATCTGTGGGCCAGCGTATTGTGTATGTTTGCAAAACAGTTATGAGTGAAAATGCAAAGCAATTCTGTCTTTTCACAATGCATTGGTGTGGCAGACGTCTTTGGTTTGAATAATGGAAATTCAGAAAAAGATATCTCctgatttaaatgtacaaaactaCACAACTCCTCTGTGAGGAAGGAAGGTGAAAAGGTTTTTGTCAGAATACTAAAGGTGACAGATTTCCAGCTCCTACACTATGAATATCACATGGGTGGAGagagtttttaatttgcacacaAGGTGGTGATATTGTCTTACCTAGACCCCATGCTGCCACCACGTTCACCACTTAGCATAAATAAGAGCAGGCTGTGAAGACGAACGCACAAAGCCTGACACTGAGACAGCTGCTCACTGGTGTCACCCAATGTGATGTGATTTCTTTTGTTGAGCCATCTATATATGCATACACTCCACTTTCAATCATTAAATGCTTTACAGTTGgattcctttttaaatatatatatatatatttttaaaaggctttctTTATTCTCGTCAATTGACTGTTAAGGAAGTTTGATgctgtgaatatttaaatagaataagaaataaaagcTAATCAAATAGATAGGCAAGACATCCTAACAATCAACTTGCACCTTTATCCCCTctgttttgcaattaaaactACCAAAAAAGCTAGTTCAGCCATAGCCTTGCACTACTCGAGGACTAAGTTGGATGTGAGCTgtaatttaaacttttacacTGCAAGAACATGGTGAGAAACCATtctaggaaaaaaataaaataaacgtgGTTGAACTAGAAAAACATGTAACTGCAGTGATTCAGTTGTTATTCTGACGGCAGACCCATCATTAATGGTTATCCTCCTCAAACACTGACTCCAGAACCATCTCCTAATATCATTCATGAGCACAAATCAAATTGAGCCATGCATGAGCCTCGCTGGGAGGAAAGGAAGGGCCAGGACAGAGAGAAAAGCACAGAAGTAGGGGAGTTAGGCGAGGCCTTCGTTCAGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020498 True 3921 mRNA 0.50 9 22777737 22789084

Neighbor

gene id symbol gene type direction distance location
AMCG00020495 cbfa2t3,LOC107730156,LOC107728039,LOC107685856 coding downstream 160918 22601940 ~ 22616819 (-)
AMCG00020494 NA coding downstream 189544 22583658 ~ 22588193 (-)
AMCG00020493 NA coding downstream 197905 22552848 ~ 22579832 (-)
AMCG00020492 LOC107685863,LOC107600353 coding downstream 264793 22474293 ~ 22512944 (-)
AMCG00020488 fam96b,LOC107673764,LOC107681502 coding downstream 423211 22352946 ~ 22354526 (-)
AMCG00020502 ankrd11,LOC107730140,LOC107561454 coding upstream 1369 22790453 ~ 22824939 (-)
AMCG00020504 NA coding upstream 128288 22917372 ~ 22930992 (-)
AMCG00020503 NA coding upstream 149713 22938797 ~ 22944614 (-)
AMCG00020501 LOC107663029,LOC107561452,LOC107730149,LOC107600367,LOC107733239 coding upstream 186583 22975667 ~ 22978624 (-)
AMCG00020510 NA coding upstream 244499 23033583 ~ 23037814 (-)
G63685 NA non-coding downstream 225154 22552382 ~ 22552583 (-)
G63684 NA non-coding downstream 225434 22552000 ~ 22552303 (-)
G63683 NA non-coding downstream 225939 22551520 ~ 22551798 (-)
G63682 NA non-coding downstream 227570 22549947 ~ 22550167 (-)
G63681 NA non-coding downstream 228010 22549415 ~ 22549727 (-)
G63799 NA non-coding upstream 272974 23062058 ~ 23068200 (-)
G63791 NA non-coding upstream 279235 23068319 ~ 23070302 (-)
G63800 NA non-coding upstream 281317 23070401 ~ 23070820 (-)
G63829 NA non-coding upstream 382724 23171808 ~ 23182107 (-)
G63834 NA non-coding upstream 405060 23194144 ~ 23194529 (-)
G63679 NA other downstream 233048 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 310970 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 645000 22130842 ~ 22132737 (-)
G63464 NA other downstream 1465132 21312202 ~ 21312605 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other downstream 2477894 20288570 ~ 20299843 (-)
G63819 NA other upstream 365608 23154692 ~ 23161900 (-)
AMCG00020561 NA other upstream 1858919 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 1902809 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 1964798 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 2322026 25111110 ~ 25119596 (-)

Expression


Co-expression Network