AMCG00020500 (ist1)


Basic Information

Item Value
gene id AMCG00020500
gene name ist1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22909385 ~ 22916833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020500
CAGCGCCACGGACACGCCCGGGCATCGCGCGTCACACGTCACGCAGCGTGGTTTGCGGAAGGGAAGGAAATAAACACCATCAACACAATTGTGCTGCATTTACCGTCAGCAACGAATCCGAGAGGAAGCTGTCCATCATGCTTGGTGGTGGATTCAAAGCAGAGAGACTTCGTGTCAATCTCCGGCTGGTCATCAACCGCCTCAAACTGCtagagaagaagaaaaCTGAGTTAGCTCAGAAGGCCCGTAAGGAGATCGCAGACTACCTGTCGTCAGGGAAGGATGAGCGTGCGCGGATCCGTGTCGAGCACATCATTAGAGAGGACTACCTGGTGGAGGCCATGGAGATCCTGGAGCTGTACTGTGACCTGCTGCTGACTCGCTTCGGCCTTATCCAGTCTATGAAGGAGCTGGATCCAGGTCTGCAGGAGGCAGTGTCCACCCTCATCTGGGCCGCCCCCCGCCTGCAGTCAGAAGTATCTGAGCTCAAGACTGTGTCGGATCAGCTGTGCGCCAAATACAGCAAGGAATACGGCAAGCTGTGCAGGACAAACCAGATCGGTACCGTCAATGACAGGTATACGGCTGTATCTTGGGTATTGACTTATGGGCTGGGCATTGATGCATTCATGTATATCCCTTTGGTGTATCTCCTGCAGCTGATGCACAAATTGAGCGTGGAGGCTCCCCCCAAGATCCTGGTGGAGCGCTACCTCATCGAGATCGCCAAGAACTACAATGTGCCGTATGAGCCAGATGCCATTGTCAGGCCGGAGGTGCACCCCGGAGAGGAAGCTGACCTCCTCCACATGGACAATGACAGCAAGAAGCCTGGGGGTGGAGGCGGAGGTGGTGGAGGGTTCACTGCTCCACCTGGGATAATGACTATGCCCATGCCTATGCCCATGCCCACCCCTCATGCTCCCTTTAACTACCCTACATCCAAAGGACCAGAGACCTTCAATGGCCCAGTTGGCACCTATGATGGGTTTAACAACTTTCAGCCTCCAGTGACAGGAGGGCAGCCCCCCCAGTTGCCCAGCTGCCCCCCTACATATGAATCTATTGATGAACTTACCAGAAATTCTGATGGCCCTTCACAGGTTTCCGgCCCCTCCGCTCAGATATATGACAACTCAGGCCTCCCAGAACTCCCCTCTGTTCCCGACACTCTTCCTGCATCCTCGTTTGGAGGAAACCCCGGCCCCTCCGATGACATCGACTTTGACGACCTGTCACGCCGCTTCGAGGAGCTCAAGAAGAAAACCTAAACCGATAGCACTCCCTGCCTGCGCTCTTTCACTACAGTTAACAGGAAGGGCTAAAGCCCTGGTTAGAATTCTATACCAACTCTTGTCTTGCAGCACAAATTTGATACCTATACTGTCTATTAGTTACAGATGCCAATTTTACTTTTatcttatttaaatgcaaattgaaatCCACCTGAATGGCTGGGCGGTTTACAACAATAATCCAAGATAAGACTGTTCTCTGATCGGATGACTCCACTGGTCGTGCgcacaagacaaacaaaagtgGACAAAAATAACATGTCTGGTAATCGCCAGTGTCAAAACCTTTCAAAAATCTGAGCTCCTCTCATGGAAAAACGTTTTTTATAATAAGACTTTTTGATAGTGTCTGCTGTAGTACTTATACCATACCAAGTTATACCATCGGTTGTATTTGTGAAGAGATCATTGCAAGTGTTGTAACCCTTAACCCTTGTTTATAAGCAGTTttcatgtgctgtgtgtgtcacaggGAGATGATGGGAGGGCACACTTGGGGATAAAAAGCAGAGCTCTACTGTGTCTAGTGAGTTAGGCTTTCCAAACCTGAAACCAACCAACACTCCTCCACTGTTCAAAGATGTAAGGGAGCGAATAGTGTCAGTCTGCCTCTGCAACTAAAGATTTTGGATGTGCTTGGCTCCGCAGGCCTGTTGCTAACAGGAAATGCTGTCCCTTttaattgctgttgtttttgctcaAATGCAAAATGCAGTGATGAAAGtactaaaactaataataaacttCCAGAGAGGCCCTCATGTCATGTCAGCTGCTATGGTTCCCAGTTGCTTTTCTTGCATGAGATTGAAAACTAGAAATATCCAAATGGTGCAGACAACACATCTGTAACTTAGTTGGAGTGGGTATGTATGCAATTTTGGGTGTCGAATGATTAAGAATAGAAATAGGCATGTATAGGTATTTAGCTGAAGATTGTCGTTTTTATCTGTACTAAAAAACGAAGTCACCAACTAAAGTGGAGAAGCAATTTCCATGTAACAGTAGAGGTtttccttatgttcttaagctttcattttctcttgtagtatacatatatatgctcaatggttttttttgtcattatttccTCAttgcctttaaaataataagaaattcCCAACATAAGAAGAACACTAAAGCAGATTTATTATATTCAAAGCTGAATTTCCCATCCCTGTGGAAATGTTACACTCGTGGCTAGGTTTGCCTGAAATGCAGCAGTACATCATAATGGAGCTAATGCTATTATTGGGGGATTGTTTGCTTACGTTTAACATCTTTAAGACGTCAAACCAATGAATGCTGTATTGCATGGAGTGCAATGGATGTGAATGTTTAAAAGAAGCTATCATTTTAgtgtatgtgaaatatttgattTACACTGAGTTTGCCTTAGTTATCTTCTTTTGTCAGTGGCCTTTGTTCTGCAGTGTGAGTTTATTAAGCAAACTCAGAAGAGGTAGTGACTTCTGTGCTGTCTGGATGTTTTTGGTTTACtgttgcacatttttattttttgccataGCTTCAGAGTCAGAATGTTCAATGCTACAAATTCAGAAGGATTGTCTATTTATGTGaagatttttttcctttcctgatTTGTAGTGTATTGAAAAGAATAGAGACACCAGGATATGAACTGGACTGTAACATCAGTAAATGTTTCAAGTcacagattttatatataaccaTGGTGGTAAAGTAAATTTAGACCCCATGTCCCCTCAAGACTTGGCCCAGTTTGCATCATGTGCTTTAAATGCTGTCTTCTGCTTGTCCTACTGTTCTTAAGAATGCACTCCTATAACCATTCTTTattctgatttttatttgaagtgATGTAGAGTTTATAAAGTTTGTTGCTAATAATTATACCCTttagtgaaaaaatattttaattacttataaCTGACATCTTCAAaggatatttttctttcctgtcaTCCAAAATggtataataaagaaaatatttccaaa

Function

symbol description
ist1 Acts upstream of or within axon extension and endosome organization. Predicted to be located in nuclear envelope. Is expressed in female organism. Orthologous to human IST1 (IST1 factor associated with ESCRT-III).

NR:

description
IST1 homolog isoform 1

GO:

id name namespace
GO:0007032 endosome organization biological_process
GO:0048675 axon extension biological_process

KEGG:

id description
K19476 IST1; vacuolar protein sorting-associated protein IST1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020500 True 3278 mRNA 0.44 10 22909385 22916833

Neighbor

gene id symbol gene type direction distance location
AMCG00020499 spg7 coding upstream 656 22901112 ~ 22908729 (+)
AMCG00020497 NA coding upstream 132900 22759678 ~ 22776485 (+)
AMCG00020496 acsf3 coding upstream 182149 22713509 ~ 22727236 (+)
AMCG00020491 trappc2l,LOC107600366,LOC107730159 coding upstream 326926 22580097 ~ 22582459 (+)
AMCG00020490 NA coding upstream 355171 22543800 ~ 22554214 (+)
AMCG00020507 NA coding downstream 36609 22953442 ~ 22961731 (+)
AMCG00020506 NA coding downstream 77463 22994296 ~ 23001846 (+)
AMCG00020508 NA coding downstream 128346 23045179 ~ 23052687 (+)
AMCG00020514 ap1g1 coding downstream 174421 23091254 ~ 23113539 (+)
AMCG00020512 phlpp2,LOC106587330,LOC106587351 coding downstream 203291 23120124 ~ 23161895 (+)
G63592 NA non-coding upstream 518144 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 526894 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 554406 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 701354 22207708 ~ 22208031 (+)
G63477 NA non-coding upstream 1269729 21638996 ~ 21639656 (+)
G63772 NA non-coding downstream 57045 22973878 ~ 22974091 (+)
G63784 NA non-coding downstream 151478 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 160068 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 169545 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 933517 23850350 ~ 23897755 (+)
AMCG00020487 NA other upstream 499892 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 767187 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 3273164 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 3307061 19597203 ~ 19602324 (+)
G63045 NA other upstream 4575353 18332569 ~ 18334032 (+)
AMCG00020505 NA other downstream 136965 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 153578 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1116204 24033037 ~ 24068457 (+)
G63939 NA other downstream 1135156 24051989 ~ 24055592 (+)
G64046 NA other downstream 1562002 24478835 ~ 24482114 (+)

Expression


Co-expression Network