AMCG00020505


Basic Information

Item Value
gene id AMCG00020505
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23053798 ~ 23062149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020505
ATGAAGCCTGCTCACGAGCGCAACCAGGAGTGCCTGCCCCCTAAGAAGCGGGACCTTCctcacaacagcagcagcagtgggaCAGCGGGGGGCACAGGggccggaggaggaggaggaggaggaggaggtggaggtggaggtggaggtgccACAGGTGTAGGAGGAGGAGCAccaggaggtggaggagggggagggggagatgaATTGCCCTCCACACGCAGCTCAGGCTCCACAGGAAGCGAGGCCCCAGGGGCAGCCAGCACTGGAGAGTGGATGCGGGTCCAGCCGGGGCTGCATTACAGCGTGGAGACCTCCGAGGGCATGAGCGTTCCCATAGATCAATACGGCATGCTCTATAAAGTAGCCCTGCCTTCCGGCACCTACTCTCCTACCAGCCTGCACCCTGTGTTGAGTCACCTCTCCCCCGCCTACGGTGTCCCCTCCCCACTCCTGCAGCACCCAGGGATCCCCTACTCGCCACTGGGTTACACCCAAATCCCTCACTCTTCCTTGCAGTTCGTCAGTTCCCCATACGCTGTCCCGTACGCGGTCCCGCCTGGCTTCGTCCCCAGTCCCTTAATATCACCCCAGTCGGCCATCCCTCAGCCTCACCACGTTTCCCATCTTGTGCCCTATCCTTCAGTCATACAGGAGGGAGTGGTCTCCcctcctcctcagcctcagACCCCAGTCCACGCTTTCACCAAAGTGGCCTCTGCAGCAGGTGTCCCTGTGGTGCTGTCTTCTGAACAGGCAGCACAGCAGcttcagcagcagcaacacatGGGGGCCACTGAGATCAGTACCAGGGGAGTGCCAGTCTTCTACCATCACCCAGCCCCCCGAGCTGCGCCAGCTCCCGTGGCGGCCTACAGAGATTCTCGCAGTGCCcagcaggagagggagaaggaggtgaacggaggagaggaggagcagGGTAGCCGGGAGCTGCATCCGGACTCTGTCTACTCCCCCAGGAATGTGAGGGTGCTGCATGTGATGCACAGCTCGGCCCCGGCAGATGGCCCAGAGAACAGGCACCATGTAGCCCTGCGGCACGAGGAGAGAGCCTCGCCAGGCCACCGGAGCACCCCCGACACTGACCTAGAGGTGCAGCAGGTGGTGGGGCGTCTGGCATCCCCTAATCAAGGCATGATGGGCAGTCGAAAAGAGGCCTCCTTAGGCCCCCTTAACCTGTCGCAGGGTTCGCACCGGGGCAGGGAGCCCCTGCCAGCAGCTCGTGGAGGGGGCAACATCCGGGAGGAGATGGCCATGCAAACCAGGCCTGTGTATGCAGGGCATACCATGGGGCTGGGTGACTCCACAGCACAACCCAGCCACCATCACCAGCTGGGGCAGCAAGCTCACCATGCTGTGATCCTGGCCAATGGGCAGCCTGTACTTGTGCCTCTGGATCACCATCAGCAGCTACAACAGCAGCACCCAGGCTTACATAACAACAATGTCATCACAGTGACTACGGCATCACCACTTGAATTCTCAAAAGCTTCCGACCCTCCGGCCAGAGCGTGCCTCCCAGAGAGGGCTGGGGTACTGGAGTTTTCAgcccaacagcagcagcagcagcagcttcaaCCCCCTGTAGTGGTTCAGGCTCCAGCACCTGCCCTTCCACCTCCAGTTCCTACTCCTGTTCCTGCTCACGTTCCTATTCCAGCtcctgctactgctgctgctgctcctcccCATCCCTCTCACTTCATGAAGGGTGCCATCATCCAGCTGGCCACAGGGGAGCTGAAGCGCGTTGAGGACCTGCAGACCCAGGACTTTGTGCGGAGCGCTGAAATGAGTGGCGGCCTGAAGATTGACTCCAGCATGGTGGTGGACATCCGCAAGAGCCAGCAGCGGCCTGGTCTGGTCTCCCTGCACTTCACAGTTGGGGAGCAGCAAAGTAAGGTGACCATAGATGTCCCCCCTGAGCAcccattctttgtttttggcCAGGGCTGGTCCTCCTGCAGCCCTGACCGCACTGTCCAGCTCTACGGGCTGTCCTGCCATCGCCTGCAAGTGGGCGACGTCTGTGTCTCGCTGAccttgcagcagcagcagcagcagcagcaacagcaacaacaacaggcaCAAGCCAGGACCTCCAACACTGCTAACAGCAGTTCTGCAGCTAGTATCACCTCCCAGTCCATGGTACCCCCAGCACCCCAACACCTGAGGGTCCCATCCCAGTTAAGATCAGACAGGACTCaccgggagagggagagggaggaggaggaggaggaggaggaggaggagcccaTGCAGGTAGGGGCGATGGGGCTGGGGGATGCAGCCTCCCAGTCAGACAGGACTTCTGCAGAGCAAGCCAGGGGCCAGAGCAGTTATTATTTGCACACGGACAGTCACCCCCGGGCAGGGATAGCAGGGGTGTCATCATCTACGAGCGCAGCTCAGAGGCGTTGGTCAGCGCCCGGCTTCCAAAGATACGGGATAAAGAGTGAGGAGGCGGCCAACccttcctcctccagctcctcacGACCTTCCTTCATCCCCCAGGAGGTCAAGCTGTCCATCGAAGGGCGCTCTAATGCGGGGAAgtag
>TU79803
CGCTGGGGTTTCGCCTGCTGGGTTGCAGCGAGATGGGCAGAACTTGTCAACCCTGAGTCCTGATTCGatcacaattttaattaaattaacttactaagaaacaaaaagcacagaCGGCAGGACCAGAATGACATGGCGAGATAAGGTGGGTGCTGTCAGCAGGAGGTTCCCAGTGCTGTACCCCGTGGCCCTAACCCCCCTGCTGACTCGCAGTGCTCCTCGTGCCCGGCAGTGAGAGAGCCTCACTGCACACCTCAGCCCTCAGCCATGAAGCCTGCTCACGAGCGCAACCAGGAGTGCCTGCCCCCTAAGAAGCGGGACCTTCctcacaacagcagcagcagtgggaCAGCGGGGGGCACAGGggccggaggaggagg

Function

GO: NA

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020505 True 2580 mRNA 0.61 2 23058288 23062149
TU79803 False 380 lncRNA 0.59 2 23053798 23058400

Neighbor

gene id symbol gene type direction distance location
AMCG00020508 NA coding upstream 1111 23045179 ~ 23052687 (+)
AMCG00020506 NA coding upstream 51952 22994296 ~ 23001846 (+)
AMCG00020507 NA coding upstream 92067 22953442 ~ 22961731 (+)
AMCG00020500 ist1 coding upstream 136965 22909385 ~ 22916833 (+)
AMCG00020499 spg7 coding upstream 145069 22901112 ~ 22908729 (+)
AMCG00020514 ap1g1 coding downstream 29105 23091254 ~ 23113539 (+)
AMCG00020512 phlpp2,LOC106587330,LOC106587351 coding downstream 57975 23120124 ~ 23161895 (+)
AMCG00020513 usp10 coding downstream 109651 23171800 ~ 23205292 (+)
AMCG00020515 NA coding downstream 152240 23214389 ~ 23232308 (+)
AMCG00020518 zfhx3 coding downstream 512957 23575106 ~ 23582740 (+)
G63772 NA non-coding upstream 79707 22973878 ~ 22974091 (+)
G63592 NA non-coding upstream 662557 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 671307 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 698819 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 845767 22207708 ~ 22208031 (+)
G63784 NA non-coding downstream 6162 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 14752 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 24229 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 788201 23850350 ~ 23897755 (+)
G63898 LOC108433019,LOC103398424 non-coding downstream 836358 23898507 ~ 23899754 (+)
AMCG00020487 NA other upstream 644305 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 911600 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 3417577 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 3451474 19597203 ~ 19602324 (+)
G63045 NA other upstream 4719766 18332569 ~ 18334032 (+)
G63786 znf821,LOC107747380 other downstream 8262 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 970888 24033037 ~ 24068457 (+)
G63939 NA other downstream 989840 24051989 ~ 24055592 (+)
G64046 NA other downstream 1416686 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 2000224 25062373 ~ 25076690 (+)

Expression


Co-expression Network