AMCG00020506


Basic Information

Item Value
gene id AMCG00020506
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22994296 ~ 23001846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020506
CTGAAAATGTCTGGTCTCTGATTATATTATTTCCCAATCGTGGAATGTTCTGGCTGCCTGGAAGCACCTGCGTTCCCGGAGAACATTCTATTCTGGTAAACAAGCTGGCAGCGATAGAAAGTATTTTGCAATCCAGAGGAAATATAAATGGGATTCTTGTCTTAATGAGGGAAAGCTGTTACAAGAGGACAGGTTCGAATATACATCAATATGTGGTCTCCAGTAGCAGTGGTTCTTGTGGTGTCAGGACTCTGTCTTGCAGATGAGACCTTTACTATGGACAAGGAGAAAGCCTATAGAAGCCGACGTATGGTGGGAGGGCTTCTTACTGGCAAAATCCCTTGGCAGGTGTTAGTATCCCTGGGGGGCAGTCAGATTGGAGGTGGGGCACTGATTGGCGACCGCTgggtgctgactgctggcagGAATCTCTTCCACAATAAGAGTCACGAGGCAAGAACCGGGGACCCTCCCAGCATTCCTAAGGTGTACCTGGGCATCACGCACCTCCGTGAAATGGAAGAAAGCTTCAATGAGGCAGAAGTGGCTGAGGTGATCCTGCATCCCAGCTTCCAGAACACCTCCGACTGGGACAACGACCTGGCTCTGATCAAGCTGAAGCACAAATTAGCTTTTGAAGGAAACAAGTTGCCCCTTTATCTGCCCGAGAAGGAATACGCTGTGGAGGACACTTACGGAATAGTGGCAGGCTGGGGTTGGGGGGCTTTGCTTAAGAACTCTGAGTTGCTGAAGACCCTGACACTCAGGGTGGCAAACTTCACCATGTGTCAGCAGGAGTTCATCAATCAAAATTGGAATTCCTCTGACAAACAAAAGCTGAAGAGCATACCTGACGTGGACGAGAACATGTTCTGTACTGAGGCCACCAAATACGAAGAGAACGTGTGCTTTGGAGATGCAGGGGCAGGCTTTGTAGTACAGGATCCCGAAAATGGCAAAAAATACCTGGCTGGAATCCTCTCTTTCGACAAGAGCTGCAGGGTGGATAAGTACGCTGTCTACATGAAACTAACAGCATACCTACCCTGGATAATGAGCACCATTGGGCCTCAGTGAGACACCCCACAAAAGCTGAGCACAAGCCATCACCAGCGCCAACGCTTTGCCTCATGTCTCCAAGTGCCTTCGTAATCCCTGCTCAAGAAACACTTCACTGTGAAGTCTGTGCCATTAAAATTCATCTCAGCCTTGCTTCTCTCTGATCTTTCCACATTAATATTCACCATTTGCATGTCTTGTTTCTTAACTTctaatttgcattagtttttaaatattgaggATAGCCAGGGTTTAATAAGGGTCACTAAATGCTGTAATCTATCTGAATTAAGTACTGGTTGTaactaaaagaacaaaaacaatataaaatgttgcTTCCCATGGTTTTTATTATAAGTCCTTACTGATTAAAAGGTGGTCTGGACAGTGTTCTATGTGGAATGCAAAAGCTTAGATAGGATAAGGCTCTCAGAATTTACAGTATACGCTTAAATTACCTAAACACATTAAAGCTTTTAAATCTGATATATatcagatttacattttttttttactgacacCACAGTATTCCATTTAGTTCTTCTCACTTCATTGAGATGTGACAATATCCAAACTGCCATACAtcttctttttaatacatttggtCTTTCAGCCATTCCcagaatattttatgttttaatttacagcaACTCAAATtagtatgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccttaTTTGATCTCactgtgtgtatttacataggTAGATACACTAGGTCTACATGCCCTTGTTGGGAATAGTTAAGTCTCTCTGGTTTAATAGGAACAACAATAATATGGCTCCAGAATGTATTTTCATTCTGTGCACCTGTGccttaataataaaatcatcagCCATTCTTTCCAATTTGCTCATCTTTAATTCAATCtaatgcaattaacacatttcaaggctgacttgtatttttccattttcagtcAGAAATAATGAGAGTTTTAATACACATCCAGagtaaataaaagattaaaaatcaGCAGTAATTAACTCTCGgaatgaaggggaaaaaacaacaacaaaaaactaagtGTTGACCATAAAACATGAGGTAACACTTTCaggaagaaaacagaagaaagctGGACCGAGGATTTGGACACAGGGAAAGCAGTCTTGAGATATTCAAAATACTAGACAACTTTCGAAAAAAGGGTGTTGAGGTCCGAGTAATCTGTCTTTCAAGGTTTAGCCtacatgttcatttaaaatatgtggcAACTAACATCAACAACATTACACAGATGAAACTGAAGGGAAATGCAGCTCACTGTGCTGTCACTCTAGAGACCATTAGAATCAGGTCTGTCAGAAGTTCAATGTACGCAAAACAAACTTCAAAGCATGTAGCTACAGAGTCATACATCTGCCTTTAAATAGAGTCCATTCTCTTTTCAATGTGGCTGATTAATGACCATATTCCCCATGACCATATCAAAATGTCTCCCCTTCTGCTTGTTTCTGACAGCGAGGGGGTTGCTTCTTCCCTCCCGAGACCAATCTTGGATTTCCTCAGATCTTTCTGGGTTGAGACAGCATAGCACTCCGCTCACCCATTTCTCGCTCGGATATAATTTCCCAATCcaatgaagcagaaaaacaccatcCCACACTCCGCTCTCTGAAGTATCAGCTAAAGACTTTTAATTGGTTTCTACATGCAGCTATGtctgttattgtgttgtgtatCACTGAACTTGAAGACCAAGTATAAAAGGTTTTCTTGTTGGACAAAGTGAATAGAAGTACTAATTTCCACTTTACAAAGGCAGGGAGCCTTGTGTTTAATTCAGTGTCGCATGGTCAGTATGCTTTATTGTTACACTGCTTTCACTTATTTCAGATTTGCTGAATGCCAAATAATTACCCAAAGTTGCATTGATATTTCCTGACATTTATTAGCAAACTGAATTGAGAATAGTACTCCACAGGAAGTCTTAAACCAAAGTAATATTAGACTTCCCGTGCTATGCTATGTAACAGGATTGACTAGGAAATCCTAGTGATGTTGTTAGGTTCTTCATAAAGTCAACCCAGTGTGTTGCACtccgcattaaaaaaaaaaaaaaaaaaatacaacatactgACATACAGACTGATAATAGTGTGAAGAAATGTagtgttgttaaaacatttagTCTGTTCTCCTATTCCCTTTACGTCAGTACCATGAAAGAAGCTCTATAATCATTCAGGCCCGAGGAGTCCCGGAGTAGAAAATCAATCAGTACCTACTCCTAAAATAATCGATTTTTAGTTTCAAGCCAGAAATGTACACGGTGGATAAAAATAAGCCCATAGAGTACTGTTACTACACCACACTAATGATCAAGGTTACTTGGTCATTACAAACATGTTTCCCAAGGATAAATCTGCATCAATTCACATGtgaattctttaaagaaataaGATTGTATAAAAACTTGAGctttaatgcaacacaaaatagAGTACTGTACCCTCCTTAAAATAATGAGCCACACGATTCAAGAGAAGACAAACTAGACATTCAATTTGCAGCGCAGAAAGGATACACTCTTTACCGTTCTGAGTGTAAAGTGTGTGCAACACTACGCATTTGATTCAGAAAAAAGTCGCAAACAAAATATAAGGTATATAACAGCTACGAACCCATAAATCATTTAGAAACCAATCGCACTATTTTATGGCAACATATTAATATAGGAATGTGGTTATTGCACTTGCATTGCCATGAAAGTCATCTCGTCCTTCCTTCATGGAAATGCAAAAACGTCACTactgttttatgtttctttatttttctgtggaaACTTTACCGCTCAAAAAAACGCAAGGCATCAAGGGAAAAGATGGAAGGGCTAACAGGTGCATGTCTTCGAAGTACTAAGTAGTAGCCCGcaatcctttttatttaaaggttttACTTAACATCAATTGCCATTTCTATTTTCACATcgaatgatttttttttgttatttcaattACAGTGTTATGTAATCTATAAAACAACCAATGTTTTCCCtgatttgtaaattatttaataagtgTAATTGTATAACTAAGCTGTTATAGATGGTTGATTTGAACATCTCTTTAGGACCTGTCTGCAACAGTTTTTCAGGACAATGTCTAGAACATATAATTTGGTTATTACACAGTTCACCCAATCCGCAATTTTTCACTGTCAGAAGATGTAAAGGCGAGTCTGACTGAATCTGAGCATGTTGTTCAGTATTAATATTGTCAGATGCAAGTTCAGATAAATGGTTAAAGGATTTGTGCATCACTTTGAAGTGGTAGTTTACGTAAGCTCTGTAAACACGGATTGGGGAGGGAGGTCACCTAATTACAATGAAAGACActacatcacatttttaattgagcACAAACAGAAGGGACAGATCTAAGATAAGGTCTTGAGTTTCAAACCCAGAGCGA

Function

GO: NA

KEGG:

id description
K16142 HP; haptoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020506 True 4523 mRNA 0.39 5 22994296 23001846

Neighbor

gene id symbol gene type direction distance location
AMCG00020507 NA coding upstream 32565 22953442 ~ 22961731 (+)
AMCG00020500 ist1 coding upstream 77463 22909385 ~ 22916833 (+)
AMCG00020499 spg7 coding upstream 85567 22901112 ~ 22908729 (+)
AMCG00020497 NA coding upstream 217811 22759678 ~ 22776485 (+)
AMCG00020496 acsf3 coding upstream 267060 22713509 ~ 22727236 (+)
AMCG00020508 NA coding downstream 43333 23045179 ~ 23052687 (+)
AMCG00020514 ap1g1 coding downstream 89408 23091254 ~ 23113539 (+)
AMCG00020512 phlpp2,LOC106587330,LOC106587351 coding downstream 118278 23120124 ~ 23161895 (+)
AMCG00020513 usp10 coding downstream 169954 23171800 ~ 23205292 (+)
AMCG00020515 NA coding downstream 212543 23214389 ~ 23232308 (+)
G63772 NA non-coding upstream 20205 22973878 ~ 22974091 (+)
G63592 NA non-coding upstream 603055 22383517 ~ 22391241 (+)
G63564 NA non-coding upstream 611805 22352173 ~ 22382491 (+)
G63589 fam96b,LOC106562058 non-coding upstream 639317 22354018 ~ 22354979 (+)
G63562 NA non-coding upstream 786265 22207708 ~ 22208031 (+)
G63784 NA non-coding downstream 66465 23068311 ~ 23070149 (+)
G63787 NA non-coding downstream 75055 23076901 ~ 23077313 (+)
G63789 NA non-coding downstream 84532 23086378 ~ 23086933 (+)
G63890 NA non-coding downstream 848504 23850350 ~ 23897755 (+)
G63898 LOC108433019,LOC103398424 non-coding downstream 896661 23898507 ~ 23899754 (+)
AMCG00020487 NA other upstream 584803 22356174 ~ 22409493 (+)
AMCG00020470 NA other upstream 852098 22135368 ~ 22142198 (+)
AMCG00020438 NA other upstream 3358075 19631325 ~ 19636221 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other upstream 3391972 19597203 ~ 19602324 (+)
G63045 NA other upstream 4660264 18332569 ~ 18334032 (+)
AMCG00020505 NA other downstream 51952 23053798 ~ 23062149 (+)
G63786 znf821,LOC107747380 other downstream 68565 23070411 ~ 23074945 (+)
AMCG00020529 LOC107090538 other downstream 1031191 24033037 ~ 24068457 (+)
G63939 NA other downstream 1050143 24051989 ~ 24055592 (+)
G64046 NA other downstream 1476989 24478835 ~ 24482114 (+)

Expression


Co-expression Network