AMCG00020516


Basic Information

Item Value
gene id AMCG00020516
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23266007 ~ 23276284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020516
AGCAAATATGAGGTGggcatatctctctctctctcttttgctcgTTCTCTATCATGCGCGCTCGACAGATAGGTAGCTAGAATGGGCCAAAGTCTCACCAACactgattttgaatgtttgcAGTGAAATGAAGAAAGATAAACTGTGAGACTCAAACAATAACATGACTGGAACGAGAAGAGACTTGAAATAGTGTCATTGAGGGCTtgagactgaaaaaacaaatggaggaagacaaaggaaagactgtttgaaaaaagaaacagaaaataagaatacaagAGGAGGGGGAGTGAAAGGAGAAACAGTCAACAGAGGTGTTTTTTATACTGAAGACTTGAGAGGGGACACCTCTGTTTCTCTTCGAATCTTTGGGTCCTCTGCAGAGCTTTGGCATTGCTGGTGCACCAGTGAGAGCTCCAAAAGCAAAAGGCAGGACAGGGCTTACTGTACTGCCACAGAACGTACGCTTCTTTCAGCAGGGTGCTCTGAAGTGCACTGGACGGACGGGCTTGGTCTACTGTACCAGCCAAGCAACTTCGGGGCATCATGAAATTGTCTGGGACTGTACTAGACCTGAACACAGCTGACTACACCATGACTCTTGACCCCTCCTACAGCCTTCTGGAATTTGACAGTCTGAGAGTCCTTCCAGTGGAAAGTGATACCCTGATGCCAGAGCCGATACCTCTGATGCCCAAATCCAATGGCCAAGCAGTGTCTCTGTGCTCCATCTGTGCTGACCGAGCCACTGGGAAGCACTACGGTGCAGCCAGCTGTGATGGCTGTAAGGGTTTCTTCAGGAGGAGTGTCCGCAAGAACCACGTCTATACCTGCAGGTTCAACAGGCAGTGTGTTGTGGACAAGGACAAGAGGAACCAATGTCGCTATTGTCGCCTACGCAAGTGTTTCAGAGCAGGCATGAAAAAAGAGGCTGTACAGAACGAGAGAGATTGGATTAGCAGTCGCAGAGCAGGTGGAGGGGAGGCGGGGTCTCTCTCAGTCAGCGTTCTGGTGCAAGCAGAGGCTCTGGCTCATCAGTTCTCCCCGCTGAACCCTCACCCTGCCACTGAGAGCGGCCCTAAGAAGATCGCCAGTGTGGTGGATGTGTGCGAGTCCATGAAGCAACAGCTGCTCCTATTAGTGGAGTGGGCAAAACACATCCCAGCGTTCTGCACGCTCCCACTGGACGACAGGGTGGCCCTGTTACGAGCCCATTCTGGGGAGCACCTGATCCTAGGTGTGGCTCGCCGGTCTCTGCCCTATGATGACATCCTGTTACTGGGAAATGACTTCATTATTCCAGTTAGCGGGCCAGAGCCTGAGGTGTCACGGGTGGCGGCTCGTATCTTGGAGGAGCTGGTCAGGCCCCTGAGAGAGCTGGAAATCAACAACAGCGAGTTCGCCTGCCTCAAAACCATCATCTTCTTCGACCCCGactgtCCAGGGCTAGAGATGGGCCAGGTGGTGAAACGGCTGCGGTTCCAGGCCCAGGTCCTACTGGAGGAGGCCGCCAGCGAGCAGCGTGGCCGTTTCGGGGAACTACTGCTTCTGCTGCCCCCCCTGCAGAGCGTGGCCTGGCAGATGGTGGAGCAGCTGCAGTTGGCCAGGCTGCTGGGGGAGGCCAGCGTCGACAGCCTGCTGCAGGAGATGCTGCTCGGAGGGACAGCTGGGAGGGCAGGAGCAGGAGTCAAGCCAGCCATGCTAGAATTTCCACCTGGGGCTCCCTCACTGCCCCAAGATGTCCTGGAAGCACATGTGATGTTGCCAGGCAACCTCACTTCTGTAATCCTCCCTGTACCACCATctaTTTCAGAGATAGCTCTCCCACCTTCACAGATGGGCGCCGAGGTGTACACACATGGAGAGGAAGGCCAGAGCCTAGCTATGCCACCAGTCCACACCTGCCTCTGAAATTACAGGGAAGTAAAGATACCACTTCTGGAAACAAAGTCCAGACAGCAGACACACCAGCAAGGCACCTGAGCACAGGGataatgatttgtttaattatgaactgaattcaatgtattttatatttttgaatgatgACTGTAAATAGCAGTGTATCGGATGTATATTCACTacttaacaaaaacattagaCTTGATATGGAGTTACTAAAGTACAAAACAGTAAATTGTCAGTTCAATATCCTGGCAAGAGCTGtgtatttcagtttcagttgaTTGTACTGCAGTTAACAAATCATTTGTTAAAAATTGTTTTTACTTCTATGTAAGCATAGCAACATGAAAggcttattttctttaaagatgtactaaattaaatgtctcCCACTTCAGTTTAGAATAAACAttctttgcaaaaataaactataatgaTTTAAAGTAGTGATCGTTTTATATTGATGCATTGGCAAGAATGCTTTTGGTATTTATGTGAAGGCCTACATGCACAAAACCACAAACGCCACTAAAATGTAGTTATTGCATTGCAAATGGCAACCACCCAAAAAGCTGCGTATGTTCAAGGAAAGAGTGCAGTATTTTCAATAACGCAGACAGATCAGAAGTAAatgaaataatgcataaatggagtttcaatatttaattgcaatgtTTCAAAACTGCCAACAGA

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020516 True 2601 mRNA 0.48 10 23266007 23276284

Neighbor

gene id symbol gene type direction distance location
AMCG00020511 NA coding downstream 97240 23164437 ~ 23168767 (-)
AMCG00020509 znf821,LOC107561503 coding downstream 179196 23070850 ~ 23086811 (-)
AMCG00020510 NA coding downstream 228193 23033583 ~ 23037814 (-)
AMCG00020501 LOC107663029,LOC107561452,LOC107730149,LOC107600367,LOC107733239 coding downstream 287383 22975667 ~ 22978624 (-)
AMCG00020503 NA coding downstream 321393 22938797 ~ 22944614 (-)
AMCG00020521 LOC106562086,LOC106587179 coding upstream 596130 23872414 ~ 23899771 (-)
AMCG00020523 NA coding upstream 643427 23919711 ~ 23923789 (-)
AMCG00020524 LOC107565376,LOC106562089,LOC106587181,LOC107738346 coding upstream 705076 23981360 ~ 23982883 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding upstream 718104 23994388 ~ 24015767 (-)
AMCG00020527 rpl13 coding upstream 775738 24052022 ~ 24055568 (-)
G63836 NA non-coding downstream 60086 23202970 ~ 23205921 (-)
G63834 NA non-coding downstream 71478 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 83900 23171808 ~ 23182107 (-)
G63800 NA non-coding downstream 195187 23070401 ~ 23070820 (-)
G63791 NA non-coding downstream 195705 23068319 ~ 23070302 (-)
G63858 NA non-coding upstream 2508 23278792 ~ 23279073 (-)
G63921 NA non-coding upstream 636578 23912862 ~ 23913221 (-)
G64012 NA non-coding upstream 956432 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 957358 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 1028200 24304484 ~ 24304935 (-)
G63819 NA other downstream 104107 23154692 ~ 23161900 (-)
G63679 NA other downstream 721318 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 799240 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 1133270 22130842 ~ 22132737 (-)
G63464 NA other downstream 1953402 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 1371719 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 1415609 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 1477598 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 1834826 25111110 ~ 25119596 (-)
G64247 NA other upstream 1844814 25121098 ~ 25139385 (-)

Expression


Co-expression Network