AMCG00020524 (LOC107565376,LOC106562089,LOC106587181,LOC107738346)


Basic Information

Item Value
gene id AMCG00020524
gene name LOC107565376,LOC106562089,LOC106587181,LOC107738346
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23981360 ~ 23982883 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020524
GTTTCTCATGACTTCGCCATTAATTTCAACCCAGACGATGATGAATGTGAAGGGATCCAGGGGGTGGTGGAGGCGTACCAGAGTTGCCTTCCCAAGATCCAGCTGTACGGACCGACCAATGTGGCACCCATCATCACCAGGGTGGCCAAGCTGGCATCTGGGGAGGAGAAGTCCAAAGATGCATCACAATACCACATCCTGCTGATCCTGACGGACGGTGTGGTTACTGATATGGCGGACACGCGTGAGGCCATCGTCAGGGCCTCCTACCAGCCAATGTCCATCATCATTGTGGGGGTGGGCAACGCAGACTTCACCGACATGCAGATCCTGGATGGAGATGACGGGGTCTTGCGTGCGCCTAAGGGAGAGCCAGTCCTGAGGGACATT

Function

NR:

description
PREDICTED: copine-7-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020524 True 390 mRNA 0.56 3 23981360 23982883

Neighbor

gene id symbol gene type direction distance location
AMCG00020523 NA coding downstream 57571 23919711 ~ 23923789 (-)
AMCG00020521 LOC106562086,LOC106587179 coding downstream 81589 23872414 ~ 23899771 (-)
AMCG00020516 NA coding downstream 705076 23266007 ~ 23276284 (-)
AMCG00020511 NA coding downstream 812593 23164437 ~ 23168767 (-)
AMCG00020509 znf821,LOC107561503 coding downstream 894549 23070850 ~ 23086811 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding upstream 11505 23994388 ~ 24015767 (-)
AMCG00020527 rpl13 coding upstream 69139 24052022 ~ 24055568 (-)
AMCG00020526 gcsh,LOC107738360 coding upstream 80009 24062892 ~ 24068509 (-)
AMCG00020540 kars coding upstream 91990 24074873 ~ 24085010 (-)
AMCG00020539 NA coding upstream 108851 24091734 ~ 24120738 (-)
G63921 NA non-coding downstream 68139 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 702287 23278792 ~ 23279073 (-)
G63836 NA non-coding downstream 775439 23202970 ~ 23205921 (-)
G63834 NA non-coding downstream 786831 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 799253 23171808 ~ 23182107 (-)
G64012 NA non-coding upstream 249833 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 250759 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 321601 24304484 ~ 24304935 (-)
G64120 NA non-coding upstream 702641 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 718250 24701133 ~ 24701336 (-)
G63819 NA other downstream 819460 23154692 ~ 23161900 (-)
G63679 NA other downstream 1436671 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1514593 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 1848623 22130842 ~ 22132737 (-)
G63464 NA other downstream 2668755 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 665120 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 709010 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 770999 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 1128227 25111110 ~ 25119596 (-)
G64247 NA other upstream 1138215 25121098 ~ 25139385 (-)

Expression


Co-expression Network