AMCG00020538


Basic Information

Item Value
gene id AMCG00020538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24308242 ~ 24328823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020538
CCCAGGCGCGCAGAGCACCGGCGGAGAGACAGGGTGCGCGGATTAGCTGCGGTGATGTAATGTTTCTCCTCTAGTGAGTACGGATGGCGGTGTGTGCCAGGCTTTGCGGAGTGGGGCAGTCGCGGAGGTGCAGGAGGCGACAGCGACAGAACCAGCGGGATCAGGACACCGACCCCGAGCTGGAGATggacgaggaagaggaggagcggATAGTGGGGAAAATGCAAACGGAGGCCGGTCCGCGGTGCCTGAGCGACTCCGCTGCCGCAGCTGCGCCGGGGCCGGGAGTAGCAGGTGTGTGCTGTACGCCAATGACAGCCACCAGCGTCAACAACAGACTCGGAACCGGGCCTGCGGGCTGCAAGGGGCCGGCGACTGCCAACTCCTTACTGGACCTGCCGCCGGAGCTCCTGGTCGAGATCTTCGCCTCCCTCCCCGGGACGACGCTACCGAATCTGGCTCTAGTGTGCAAGAAATTCAGGCAGATCCTTAATACAGAAACCATCTGGAGAAGACGATGCATTGAGGAGTTTGGGATGCACGAAGACCTGAGGAAGGTGGAGGTAGTGGGTATGGCCAGCAGGGAGCTGTATGTGAAACTGTTGCACCCATACAGACATATTCTGGGCTTGTGGCAGCCTGATATTGGACCGTACGGAGGACTGCTTAACGTTGTGgtggatGGTCTTTTCATCATTGGCTGGATGTACCTGCCGCCCCACGACCCCCGTGTGGACGACCCCATGAGGCGCAGGCCCCTGTTCCGCATCCACATGTGGGAGAACAGCAAGGCCACAGTGGAGTGCATGTACGGACACAAGGGACCCCACCAGGGAGACATACAGACTGTAAAGAAAGATGAGTTTTCCACCAAATGCAACCAAACTGATCACCACAGGATGTCTGGCGGAAGGCAAGAGGAATTCCGCACGTGGTTGGAGGAGGAGTGGGGACGCACTCTGGAGGACATTTTCCATGAGCACATGCAAGAGCTCATCCTCATGAAGTTCATCTACACCAGCCAATACGATAACTGCCTGACCTATCGGCGCATCTACCTCCCCCCTCACCAGCCCACAGACCTGCTCCGGCCAGGGCTTTTCAAGGGGACATATGGAAGTCATGGGCTGGAGATTGTCATGTTCAGCTTCCACAGCACTCGAGCCAAAGGCACCAAACTCACTGGAGACCCCAACGTCCCGGCAGGCCAGATGACTCTAGACATCGACCTGTCACGACCTGTGCAGCTCCCCGACCTGGAGCAGCAGCGCAGCATCGAGGAGCTGTCCCGGCTGGTGCTGGGCATTCATGAGCAGGTGCAGCGGGAGCAGGCGGAGTGCGAGGCCCGTGGGGGCGACGGGGGGCAAGAGGCAGACACGGATGCCAACCCCCCCCAGGAGTGCAGACAGAGGCAGGAGGCTGAAGCTGAGGGAGCAGCAGGAGGAGAAATGGGGCTGGAGAACGCCCTGCAAGATGAGCCTACTGGTGCTGCTTCAGAGGCCAGGCCGATAGAGTCTGAACCCCTGGCCTTTGTGTTGCCACTGGGGGTGATGGCCCGCACTGAGGTGTACCCGCGCACCTGCAAGATGTGTTTCTACGGCACGGGGCTAATAGCTGGCCACGGCTTCACCAGCCCAGAGCGCACACCCGGGATGTTTGTCCTCTTCGATGAAGACCGGTTCGGCTTCATCTGGCTGGAGCTGAAGTCCTTCAGCCTGTACAGCAGGATCACAGATACACTGCCTTACGCTCAGGCCCCATCCATGGAGTCCTTCGAAGAGATGCTGAAGAACATGCAGTCCTGGACATCATGACAACCTGCGCTCCTGACCAAgtgactgaaattaaaataaataaataagagagatggaaagaaaaaaggaaatatatcgTGAGTTGACATGAAACAAAACCTTGACCTCTGTACCTCTCCATAGAAGCATGCACTTtgacacaaatgcaaacaccgctttttaaaaagtttgaTTACTCGAAGGCCGAAATAAAGAGTACACCGCAAAAAGATATCCCGCCAGCTACAAAGTCAAGTTCTGCAAGTTGTGTGAGCTTCCAGTttgtaatcaattaatcaaagcttgttccaagtgaaaaaacaaaaccgaacaTATAGTATTAAGCAAAGACTAAAATCAGAGTTTTcaatttctctttcatttcaaTCTTTGTAGTATAATCATCTGTGAATTCTTAATTAGCAGTTTTACAGATAGTCTCACGCACCTGGATTAGCATTTATCCTGGTCAACCCTACCCAAATTGACATTGGATAGTCATAGACTGGTACTAATctaggtctgtgaaaccagccctgaGACAATAAgggttatttttttactttctcttcagaaattaatatatatgtatatcaatatatatatatatatatatatattaggactGGGATGGCTTTCAAAATATGTAGAAAGACACTTGTATTACAGgaaattttaattaacaaatggaATAATCTAGGTAAAGAATGACTTAAAATTTATGAGAACCTTTGCGCAGGGTAAAGACTAATCCACTTCCGTCAAACTCTGAAAGTCGatatgacaaaaataatgaaaacctaTCACCTTTTAGCCATTTTAAGTGCAGTCCctttgagtttttttatttataatcactTTTGTTGGtgaaatgttcagtttttaggattttgttgtttgtatgtTCAGATACAGcacttattttttgttctggGTTAAAGTATATTATCGCTATGCCTATGGATTTTGTTTCTTGCACTACATTTTGTGGCTTCTACCAAACCAGAGCAGCATGCTGGGGCCTGCCAGTTGATGGTGCTCAAACAAAGCCTCACTGCCCAGGAACCAAGACAGCGGTCTTGCAGGCTAAAcacaatctgtttttaattttttattcctgggttgcttttgtatttgattttaatgctCATCCTGACAGCTACGATGATGCAAACAAATTACATGATGCTATCTGATACTAATTTGTGGTGATTAGAAACAGGtctgaaatacttatttttttgtgtgcgtgtaGTTTAGCCATTTTAGTTTGGGACTTTTCCCACATTTTGTTGCTATTTTCGTGAATCAACACAACATGGCCATTGATAACATTGTCTCTATATggccttttatttaattcactACATCAATCTGTTTTTACCCtagaaaaaagtgtttgtgtcATGACTCCATGCTTAAGCTAAAGCTATTGGACTTTTCTTTCCTTGCAGTGCTATAGCTGCATTGTTGCGTAGTATTTTGGTTCAGGATAGATGTTTAAAAGCAGTAGTTCATGTGCAATTATACTACAGTTGAATCATGTGCTAAATATTGTACTGTCAATACTGTGGTaattttttcagtcttttttttttttttttttttttaaccctcaTGATGACCGGCAGGGCTAAGGCTTATGTTGGAAAAACATATTGTTGACATTGCTCTCACTGTGTCGTCGGACTGCTGCTGTATGTGAGCTAACCTATCGAAAGGActcaggtttttcttttcttttgagcGTTTGCTTCATACAAATCTAGTTTTCTGTCCggtaacaaaatgtgcaaacaaaagtaaaaagcGCATTTGCTTCAGTAACAAAACTTTACATTGATGTCGGAGTGAAAGTGAACACTGATACTGAGCTAAGTGTTCATAAAGTCCCCTTTGGTCTTGTAGCGATGTCACTTGGTGCTGAACAATAAATTAGCTTTGCAAGTGGGACAAGCTTGTATATCAATGGGGAGTTTGTGTTTGAGGTTAAGCATTTGTGTTGTTAGATATGTGGAGAGCCAGTTACttcctttttaatataatttcattttgcaGAAGTGCTTAGAACTAGCAATGCATCTTCCTAACTGGGAGTGTTGAATTTTTCTATTTgaattgttatacattttttatctgCTACTAACCACACTAATTCATGACAGTCACCCTGTTTTGCAGCATACATGTGGTCTTCTGGAGGCGTTTGTCTTTTGAGAATCAGAATCTTGTGTTCTAATCACCCTGCCAGGTTTCCATCGTCAATATTATAATTCTGTAGAGCCCAGTATCATTCATCATGGAGTGTTTCAAAACCTAACTGTCATTAATATAAGGCTGGAGAAACCGCCTAATCAACATGAGGGCATGTGATGAAGAAGGCAGAATGGTCAGAATGCATCCACTGCAGCCAAACAGTAGTAAATTGtgtttgtggggaaaaaagccactttattttccatgtttgtttatttattatgtgcaGCATATCCTTTCTCAAAGTTGGAGGTAGCGAAATAGCTCCTTATGTTTTTAAGTGTACTTCTCCATAGGGTACAGTgccattttgaaaaagaaaaagaaaaaaaaaaaaacttgtggaGAGGAAAACCACAGCAATGTTActgacaaaatgtttaaaaagagaattgtaatatatgttaattttatttatttaatataaacctGGATTTATCACGTGTAAAAGGTGAATTTCTTTTTACAATTCAAGTAAATGCCATGTATTTCTGCTGTTTTGCGCTTTGTGTACTTAAAACGTTAAAACTATTGTTTCAAAGATGCATAAGTTGAAGACCTATCAGCACTGAGGGTATCTTGTCATCTTTTCTTTCCCCCGTTGAAAAAAGCTGTAATAGttaatttttcttctctgtACTCAGACAGGTTAGACTCTTGTTTAATTTAGGAGtcatattttaatcaatgtgtttttttcccccatggtattgttttaaaagtattacaaGATTAAACACTTTTACAGTAGGACTTCAGGGAGCTTTACAGTTTGCTTTATCGGTTCTCAATAAAAAAgcggaaaaaaacaactactaACAAACAGTTGTGTTTCTTCGTATAATAACTTCAAAGCGAAGTCCTCTCTCTTGGTCAGTCTAATTCAGTGGATCCATCATACTGGTATTGTTTACTccatgacatttatttttttattgtgattattatcatttatatgtttgtttgattatttattcgGTAATACTAGATAACATCATATCCATACATACATGAAGAGCAGGTGGGGTTGAATGGACTGACTGGAGACTGAGGCTTACCTTGCTGGTGAATTTTGGAAAGGCAATAACACATTTGTgtcatatacatacagtgaggggaaaaaagtttttgattccctgctgattttgtacgtttgc

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K10308 FBXO31; F-box protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020538 True 5206 mRNA 0.43 9 24308242 24328823

Neighbor

gene id symbol gene type direction distance location
AMCG00020542 NA coding downstream 65599 24236128 ~ 24242643 (-)
AMCG00020541 NA coding downstream 111282 24164670 ~ 24196960 (-)
AMCG00020539 NA coding downstream 187504 24091734 ~ 24120738 (-)
AMCG00020540 kars coding downstream 223232 24074873 ~ 24085010 (-)
AMCG00020526 gcsh,LOC107738360 coding downstream 239733 24062892 ~ 24068509 (-)
AMCG00020544 NA coding upstream 22658 24351481 ~ 24370043 (-)
AMCG00020545 zcchc14 coding upstream 72347 24401170 ~ 24401799 (-)
AMCG00020546 NA coding upstream 149678 24478501 ~ 24508437 (-)
AMCG00020550 slc7a5,LOC107583127,LOC107701543,LOC107707523 coding upstream 197279 24526102 ~ 24531462 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding upstream 217113 24545936 ~ 24553994 (-)
G64028 NA non-coding downstream 3307 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 73115 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 74844 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 395021 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1029169 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 356701 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 372310 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 526113 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 616475 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 672524 25001347 ~ 25001657 (-)
G63819 NA other downstream 1146342 23154692 ~ 23161900 (-)
G63679 NA other downstream 1763553 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1841475 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2175505 22130842 ~ 22132737 (-)
G63464 NA other downstream 2995637 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 319180 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 363070 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 425059 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 782287 25111110 ~ 25119596 (-)
G64247 NA other upstream 792275 25121098 ~ 25139385 (-)

Expression


Co-expression Network