AMCG00020539


Basic Information

Item Value
gene id AMCG00020539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24091734 ~ 24120738 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020539
tctctttccAGAATCAGTCTATGACCTTCTCCCAAAAGAGCTTCAGCTGCCGTCCTCCTCAGAGTGCAACACGGCAAAAATGAGCCAGAAAAGTGGTGGAGAGGCTGGGCCTCCCCCTTCGGCAGCCCTCGCTTCAGATGCGACCTCCACCTCCTCTTCTATGTCCATGGGAGGTCCTCGCAGTTCTTTTACTGCATCTTCCAGCCCCACCATGCACTCCTCTACCTCAGTCACTGACCGGGCCACCGTTCGCGACAGCTGCACTCCGAGTGAGGGGGTAAGTAGTCGAGGAGTTGCAGAGATACTCGGGAAGGATGGCAAGCTGGCCGCAGCGGGTGGCAGTGcggggagcagcagcagcaatggtggtggtggtggcggcaGTGGCAGCGGTGCTGGCCACATCGGAGGCGGGGCCCAGCAGCACCAGACGACACCCTCCAAGCGGCGGACGGTCCTGAACATCTCCCCTCCGCCCGAGGACCTGTTTGATGACAGCCGCATGTCCTGCCAGGACGAGGTCACCCTGGACTCGGAACAGAGCAACAGCATCTGGATGGACGACTCGGCCTCCAATTTCAGCCTCATGAGCTCCAGCTCCTACAATGACAACACCGAGGTGCCGCGCAAGTCTCGCAAGCGCACGCCCCGACAGCGCCCCGGCCCCAAACATGTACTCGCCGATGAGGCCAGCATGGATGTGTTCAACGCCGACAGCGCCAAGGGCCCTCACTTTGTCCTCTCCCAGCTGGGCTCAGACGGCAAGGCCTGCCCCAAAGGAAGTTCTTCAGATTGTCCACAGAGTCCCACGCAGAAGGGCTGCTCCCTGTCCGGACAGTACCCCAGTAAATGTGAAGGGAAGGAGCTGAAGATCCTCGTCCAGCCAGAGACCCAGCACCGCGCCCGCTACCTGACCGAGGGCAGCCGGGGCTCCGTCAAGGACCGCACACAGCAGGGCTTCCCCACTATCAAGTTGGAAGGTGTCAACGAGCCAGTCGTCCTGCAGGTGTTTGTGGGTAATGACACAGGGCGTGTGAAGCCACATGGATTTTACCAGGCCTGTCGCGTTACGGGCCGCAACACCACAGCTTGTAAGGAGGTGGACATTGAAGGCACCACTGTGATTGAAGTGTGCCTGGATCCCAGCAACAACATGACATTAGCGGTGGACTGTGTGGGGATTCTGAAGCTGCGCAATGCTGATGTGGAGGCTCGTATCGGAGTGGCCGGTTCCAAGAAGAAGAGCACACGTGCCAGACTGGTGTTCAGAGTCAATATCCCTCGCCCTGACGGTTCCCTCCTCACATTACAGACCCCGTCATCTCCTATTCTGTGCACTCAGCCCGCTGGAGTCCCTGAGATCCTGAAGAAGAGTCTGCACAGCTGCAGTGtaaagggaggagaggaggttTTCCTCATTGGCAAGAACTTCCTGAAGGGGACAAAAGTCATATTTCAAGAAAACTCATCAGACGAGAATTCTTGGAAAGCCGAGGCCGAGATTGATATGGAGCTGTTTCATCAGAAGTTGACCTCTCCCGTATCTGTGGGGATCTACGTTGTGACCAACGCTGGGAGATCTCATGATATCCAGCCCTTCACCTACACTCCAGAGCCCGTTAAAGCAGTGGATGTAGCAGTGAAGAAAGAGGTTCCTTCCCCAGCCAAGCCATGTTCCTTTGAACAGCAAATAAAAGCAATTCAGGCCAGCAGTTGTTCCCTGGACAAGGCCAGCCTTCTTCCTAACACATTGACTCCACTGCATCCCCTTGTCAAAAGTGAAGAGGTGACCCCGATGGAGGTTTCCACTGGTCAGAGCACAGCTGTGGTGTTCAAGCAGACTTCAGATGTCATTGGATCAGCACAGCAGACTCTGGACATGAGTGGCAGCCTGTCATCCAGCAACATCCCATTCTCCAGCCCCCTGTCCCAGCAGCAAGGGGATCCTGAGCAGCCGCAGCCGCAGTCCACAGTCTTCACGAATGCTGAGACCCTCGCCACCATTCAGAAGCAGGACATTTCTCCTGCCAGCTCCTTCTCAGTACCTGGAGAGTCCCTGCTCCAACAGGTTTCCCAGCAGTTCCTCCTGGAGCCCCGAGAGACCTTACCCTTGGAGAGGACCAAGAGCAATTCAGGGGCGGTGGTGGGACTGGCCCAGATGGGTGAGGctccacagcagcagcagcagcagcaacaacagcaggGCCAGCTCTCCTCTGCGCTCTTCCCTCAGGATGGAGGGGTGGCCCAGCTTGAGAGGGCTGTGCGTCAGCTGCAGGCCGGGGGTTTCTCTGCGGGGGGCTCTGGGAGTAGCAGCCTTGTCCAGCAAGTCTTGGAGGCAGcggcacagcagcagcagctcaatTCAGTGCTTTACAGCCCCAATCCCTCAGCCGAAAGCATTCAGCAGCAGGTCCAGGAGAACATGAACAGCCTGCAGCTACAGTCGGCAGAGAGCTCGCTCGCTagtcaacagcagcagcagcagcagcagcagcagcaacagcagcaggttCTGGACAAcctgagcctccagcagcagctgcagtcAGAACTCTTTTCCTCCCAGGTCCAGGGAGCGGTGCCCCAGCAGCTCCCCATGCAGTGTGAGATGTTTCAGGGGGCACCTGCGAATGACAGCCCCCGACAGCAGGGCTCTCCCCAGGGCATGCTATTCCACACCCCAAGCCCCATGGTAGAAACGCAGGACTCGCCAGGGGGGCTGTTCCACAGCCAGAAGGCCTCCCCCAGCCAGGAGCAGGTCCAAGCAGCCCTGTTCCAGAACACCCTGACAGTGCTGACGAACTCCCCCATTCCCACAGAGCAGCAGCCATCGTCCAGTCTCTTCCTGTCACAGAGTGCTGTGCCCAGCCAGCTCAGTGCAGACAGCAAGCAGCAGCTGGCTTTCCTGTCATCTCTTCAGTCGTCTGCCTCCCCAGACCAGCCATCAGTGTCTGTTTTCCAGTCCCAGGCTCAGTTGCCCCAAATGCAGCAAAGTACCCCCATGGAACAGCAAGCAGCACcccagcaacagcagcaacagcagcaacaaggGGCAATTTTCCAGAACATCGCCCCTCCGCCAGCCAGCGCACTCTCACccagccagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcagcaacagcagcaggcTGGCCTGTTGTTCCACAATAACATGAGCCCCCAGGAGCAGAACCCTGGCCTGCTCTTCAGTGGGCAGAACCAGATCAACAGCAGCCTCTCCTCTCAGGAGCCACAGAGCTCCACCCTCTTCATCCCTCAGTCCAGCATGGTGGCTGTCGGTCAGCAGGAGCAGTCAGAGCCCATGTCATTCCAGAACCAGAGCACGGTGACAGGGAACACGCCCCCGAGCGAGTCTCCACAGCAAGGCCTCTTCCAGGGCCAGCAGCCCATGCAATTAGTTCCAaactccagcagcagctccgATCAGCCCGTCACCCTTTTCATGTCTCAAGGCTCCATATCAGCCCTGCAGGGTAACATCAGCTCCCAGGAACTTGTCCAGAGCACCATGTTCAACCCACAGAACAGTGTGGCCAACCTGCAGACAACCACCTCTTCTCCTGTGCAGCAGCCTGGGTCACTCTTTCAAACCACAGTGACTGGCAACATGAACCAGCCTTCCCAGGCGCAGCAGCCGACAGGCCTGTTCCTCTTTGGCATTCAGAACGACTGTGGTCAGCTAATAAACTCTCCAGGATCCACACTGTCAGATCAGCTCATTGCCATCAGCCAGTCAGGCCAGAACCCCCGGGAgagagaggcggagatccagacCCTGTTGAATCAGACCATATCTGAGTCGGGGAACATCCAGAACACTATGACTGCCTCTCAGAACATGGAGAAGATTGATGACCTGTTGGTGagcctccaggaccagagcaACAATATCTCCCGTTCCTTCTAATGCTGCAGCCAGCCAGAGGATCCAACAGGACCCCAGTTAAGATTGTGAAGAGAGTGTGGGAGAGAAAGTGGAACGTGCTAACTGCCAGGGTCCTGTCTGAAGAATATGACCCATCAAGACTTCAGCTGCGCATCACTCTAAAACCCACTTTTCATTTAGATGCGGTTTTATATCTCAACACCCGCTTGACTGGCACTGAGGAGCAGCCAGGAATGAACTGGATTTGGGACGAGGGGTGGGCTGGGAGAGCAGTTTGGCTAACTTGTGATATGCCTAGGAATAGAAGGTCTAAAAAAAGGTTCCCCACAGCTGTCAGGGCGATTCTGGTTTAGCTTGGCTCTTTAGCTACAGCTGTAGAAGCATCATATCACATGATGGAATGTTTGTTAAACTTCTCAGCACAGAAGTCGccgatttaacatttttaaaggtgTGCAACAATCAAGCATACAAAAAGTTCTGAGTTATTAAGGACTTTGTGTGCGGTAAAACGGCTTGTAAagcttttctctttattttcaagaaaatacCCTTTTgaggtaaacaaaaaaaaacaaaaaacatttaaaaataatattttgacatTATTATACCTTCAgcactttaaaatgctttacttTGTGACCAGCTATTCCCTATCTACCCTCTTCATAAATTTGTTAGTCAGCTATTTATGTCCATATTTTTAGAGATTATTTGTAAGTCTTTTAATTGTTATATGGATATCTCTCcaattgtttactgtatatatttatactatttTCTTACTCATGCATGTTTTTGAGCCATGACGAAAGTTTTATAAACAGCTGGTTCGTATTTTGCCCACCCTATCCCATCCACACCTATCCTGCCCCTGAAATTCCAACATTTTTACCCCCCTCAGTCAATATGAAGGGAGATGAAGTCAAGGAAGGTACAGAGAAAGAGATAAATAGACCAGCATTTAGGtcattcatttatattacaGATGCATAATTCTTTTTTtggtgtgaatgtgtgtttgtggttgtatgtgtgtgggtacatgtacacatacatgtataaatatatatgtgtgtgtgtgtgtgtgtgttttaagtgaATAATATAGAGTATATTGTTATTTGTACTACAGAAGTACGActgtaatatacttttttttgttttggttatgtCTTCTCCGTTGTAATTTTTGTGACATGTTCTCAGCTTTTGGCACCTTTTTGCCAAGAATTGGATCATACAGATTTGTTTCAGATCATACAAGgaaagaataatacaaagaaaaaggcCTCTGTATTCAGTAGGACATTTTGCTTTGCAGCCGTGTTACAAAACTGCAGCTATTCTGcagctggtgttttttttagttttagtttttttttttttttttttgggtttttggttttgtttgtatttgttt

Function

GO: NA

KEGG:

id description
K17335 NFAT5; nuclear factor of activated T-cells 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020539 True 5354 mRNA 0.52 14 24091734 24120738

Neighbor

gene id symbol gene type direction distance location
AMCG00020540 kars coding downstream 6724 24074873 ~ 24085010 (-)
AMCG00020526 gcsh,LOC107738360 coding downstream 23225 24062892 ~ 24068509 (-)
AMCG00020527 rpl13 coding downstream 36166 24052022 ~ 24055568 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding downstream 75967 23994388 ~ 24015767 (-)
AMCG00020524 LOC107565376,LOC106562089,LOC106587181,LOC107738346 coding downstream 108851 23981360 ~ 23982883 (-)
AMCG00020541 NA coding upstream 43932 24164670 ~ 24196960 (-)
AMCG00020542 NA coding upstream 115390 24236128 ~ 24242643 (-)
AMCG00020538 NA coding upstream 187504 24308242 ~ 24328823 (-)
AMCG00020544 NA coding upstream 230743 24351481 ~ 24370043 (-)
AMCG00020545 zcchc14 coding upstream 280432 24401170 ~ 24401799 (-)
G63921 NA non-coding downstream 178513 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 812661 23278792 ~ 23279073 (-)
G63836 NA non-coding downstream 885813 23202970 ~ 23205921 (-)
G63834 NA non-coding downstream 897205 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 909627 23171808 ~ 23182107 (-)
G64012 NA non-coding upstream 111978 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 112904 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 183746 24304484 ~ 24304935 (-)
G64120 NA non-coding upstream 564786 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 580395 24701133 ~ 24701336 (-)
G63819 NA other downstream 929834 23154692 ~ 23161900 (-)
G63679 NA other downstream 1547045 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1624967 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 1958997 22130842 ~ 22132737 (-)
G63464 NA other downstream 2779129 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 527265 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 571155 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 633144 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 990372 25111110 ~ 25119596 (-)
G64247 NA other upstream 1000360 25121098 ~ 25139385 (-)

Expression


Co-expression Network