AMCG00020544


Basic Information

Item Value
gene id AMCG00020544
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24351481 ~ 24370043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020544
TTCACATTGAGAGAATAGAACTTAAGGGACAGGCACACAAAAAGAGTGAGAAGGCGGCAGAGTATTCATTCGAGgttatgtGGTCAGATTCTACAGTATCAACCGTTTCAAAAGTTCCTCAAGAACTGACTGACTTTTTCGCAAAGCTCTTGCAGCTCTTTCCTGATGAAGATATTGAGAAGCTCATTCCACAGCTCACTGGCCTGGACTCCACCTTGGACCCAGACCCCAGATGCCTGACGTCACTGCCCTCCCACATACTGAAACATGACCAAGTCAAACAGTTCTTCAGCACCCTATCAGTCGCCCAGTGTGCCCAAACAACAAGTagGCCTATCTGTGGTGTTGCCAGTATACAGCCTGTatgcagcaccagcagcagctgCGCACACCAGCTATCTCCACCCTCCTTTGTTGCCCCGTTCCTCTCCCCTCCCAGTGGACCCATCCTGACACCCAGTGGCACGCTGGCAGAGAACCTGACACCGTCCCCCGCCTTACCCACTGCATCTAACCCACCTTTGCACAGCTTACAGAGCCAGCCAAGCCAAGAGCAGAATGGCATCCTGGATTGGCTGCGCAAACTACGCCTACACAAATACTACCCCGTCTTCAAGCAGCTCACCATGGAGAAGTTTTTGGCGCTGACAGAGGAGGACCTCAATAAATATGATCTTACTCAAGGAgcgaagaaaaaactaaaaacacagctgGAGCTTCAGAATCGAGAGAAGTTTGAAAAGAAGTACGTGGTATCCCAGTTTCCTGTGCCCACCAGTGGAGTGGCAAGAGTGACCCCTACCAATCATATTCACACCAAGCTGCGTGTGGAGGTGGAGCCCAGCCCTCATCCCTTCCCCAGGGACAGTAGCTCCTCCTCAGGGTACTCCAGTTCCCCGACCAGCCCCATGGCAGCTTCTTCCAGGGACGAGGCCTTCGACAGCACCGAGGACACCCACAGACGCACCGAGTCCTTGTCAGAGTGCCCTGGGAAGGAGAAGCCCTCTGTTTTAATGAATCACTTCATGGCAGCTGGTGCACCCAGACCAACAGCTCAGGTCCTGCCAGTGCAGAACGACGGCACTGCCAGTTCCCCCTATCACCTGCCCCTTCCCATGCCCGTCCTGCCAGTGATCTCCTCTAGCGTGGTGCCCAGCCGCATGCTGAGCTCCATACGGAAACCCGACAGGGGCAGCTCCAGGATGCCTCCTCCTCCCATCCTCTCCCCTCTGTGTCTCGAGGAGAGGATGAAAGCCCTGGGGCCGGGCAGCAGCATTAAAATCGAAAAACGCTTCCCCAGCCTCAGCCTGGAAATGTCTGCCCTGCAGCCCAGCTCTATGCTCCTGGACAGCAGCTCCTCTCCAGTGACGCTCACAGGCTTCGCAGTGCGCACCAAAACCGGGCAGGAGGGGACGATGAGGTCCCCCCCAGGACTGCTCATTGAGACCAGCACGGCCCCCACTGCCACCTCCAACACCATTCACCACATCTCCCACACCCCACTCAAGCTCCAggtctccccatctctctccggCGACGCTGGCACCCTGCCCATCAAGAGCGTCCCGCCAGCCGTAGTCAACCCGCGCGCCGGCCCTTACTCTACCAATGCCAAAGTTGCCTTCTCAGCCGTGAGCGGCCTACCCATGGCTGCTGTGCCAGGGACCTACTGCAGCAACACTAGCGCCCCTCCTTCCACCATCCAGACCAACGCCATCACCGCACACGCCAGCCCCTCGGCAAGCTCTAGCCCTGCCCTCTCGGCCATGGCAGAGAACAGCTGCTACAGCACAGCTGCTGGCTCAGGGCACCAGGTCTCGCAGCAGCAGCCTCAGGGGCAGTCAGGCTGTGTGTGCAGCTCATGTGGATGCAGCGGGAACTGTGGCTCCTATAGTGCTCTGCCTGCCAACTACGCCGGTTATTTCCAGCATCCCTTCTCGGGGCCGTCCGTTTTTACCTTGCCGTTTCTGCACTTCAGCCCCCTGTGCAACAATGGCTACATTGGCCCGCAGCAGTACACCAGCTCCACGGGCTTCTCCTACCCCATGGTGCCGCCGCCCCTGTACAACAACAGCCTGACTCCAGAATCCATGCTGAGCAGCCAGTCTGGCTTCGTCATGCCCCCCATGCAGAGCTTCATCAGCGGGGCGGCCGGAGTGTACCAGGCCCAGGGCATGATGGGAAACAGCTCCGGACACAAGAGGGCAGGAAATGTTTCTTGTTATAACTGTGGCATCAGCGGACACCGGGCTCAGGACTGCAAGCAGCCGCCGATGGATTCTAATCAGCAAGGTACCTTCCGGTTGAAGTACGCCCCTCCTTCGGAGAACCACGATTCTGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020544 True 2345 mRNA 0.58 10 24351481 24370043

Neighbor

gene id symbol gene type direction distance location
AMCG00020538 NA coding downstream 22658 24308242 ~ 24328823 (-)
AMCG00020542 NA coding downstream 108838 24236128 ~ 24242643 (-)
AMCG00020541 NA coding downstream 154521 24164670 ~ 24196960 (-)
AMCG00020539 NA coding downstream 230743 24091734 ~ 24120738 (-)
AMCG00020540 kars coding downstream 266471 24074873 ~ 24085010 (-)
AMCG00020545 zcchc14 coding upstream 31127 24401170 ~ 24401799 (-)
AMCG00020546 NA coding upstream 108458 24478501 ~ 24508437 (-)
AMCG00020550 slc7a5,LOC107583127,LOC107701543,LOC107707523 coding upstream 156059 24526102 ~ 24531462 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding upstream 175893 24545936 ~ 24553994 (-)
AMCG00020547 ca5a,LOC102795873 coding upstream 187570 24557613 ~ 24576901 (-)
G64028 NA non-coding downstream 46546 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 116354 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 118083 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 438260 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1072408 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 315481 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 331090 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 484893 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 575255 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 631304 25001347 ~ 25001657 (-)
G63819 NA other downstream 1189581 23154692 ~ 23161900 (-)
G63679 NA other downstream 1806792 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 1884714 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2218744 22130842 ~ 22132737 (-)
G63464 NA other downstream 3038876 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 277960 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 321850 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 383839 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 741067 25111110 ~ 25119596 (-)
G64247 NA other upstream 751055 25121098 ~ 25139385 (-)

Expression


Co-expression Network