AMCG00020546


Basic Information

Item Value
gene id AMCG00020546
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24478501 ~ 24508437 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020546
CTCCGTGTGTATGAGCCGGCACGCTGAGTTACAAGTGGCAAAGCGAAAATGGGGAAAAagtgcaaaaaagaaaagaaagtgaagGGAGCGGAGAAAACAGCCGCcaaaatagagaaaaaaatctCCAAGAGGTCCAAGAGGGAAGAGGATGACCTAGAGGCTCTCATTGCCGAGTTCCAGTCCTTGGATGCCAAGAAGACCCAGGTTGTGGAAACCACCTCCTCTCCCCCATCCCCGCGattaaacGCCTCCCTCTCTGCCCACCCTGACAAAGATGAGCTGATCCTTTTTGGAGGGGAATATTTCAACGGACAGAAAACCTTCCTATATAATGAGCTGTACTTTTACAACATTAAGAAGAACTCGTGGCTGAAGGTCGATATCCCAAACCCACCACCTCGACGCTGTGCTCACCAGGCGGTGGTGGTTCCCCAGGCAGGGGGGCAGCTCTGGGTGTTCGGTGGGGAGTTTGCATCCCCTGATGGGGAGCAGTTTTACCACTACAAAGACCTATGGGTTCTCCATCTAGCAACACTGACGTGGGAGCAGATCAATGGCCATCGCATGGTGCTCTGTAAGAGACAGCTGGTTGTGTTCGGTGGGTTCCACGAGAGCACCAGGGATTATGTTTATTACAATGATGTTCATGCATTTAACATGGACACCTTTTCCTGGAGTCGTCTCACCCCCTCCGGCACTGGGCCTCTCCCACGGTCCGGCTGCCAGATGGCCTCTACCCCTGACGGAGCAATCATCGTTTATGGGGGATATTCCAAAGTGAAAGCCAAAAAGGATGTGGATAAAGagaAATGGGTGTGGAGCAGAGTCAGCCCCTCAGGAGTGAAGCCCACACCTCGCTCTGGATTCTCACTGGCTGTCGGGCCTAGCAGCCGCATAGTGCTGTTTGGAGGGGTGTgtgatgaggaggaggatgagtCGCTGGAGGGAGACTTCTTCAATGACATGTACCTGTACGACATGACCAAGAATCGATGGTTTGCTGGGCAGCTGAGGTGTCCCAAGTCAGAGAAAAAGAAACGACGCAGGGGGAAGAAGGGTGATGGAGAGGGAGCTGAGCTGGGGCAGGATCagaagggagaggaggaggaggggcagGCGCCAGTGGAGGTGGTGAAAGAAATCGTGGCTGATGACGGGACGGTCATGACCATCAAGCAGGTGATCCCCAACCCAGGGGCTGGGACACCGTCCTCGgacagtgaggaggaggagggggaggaggatgAAGGGGAAGGTGCCGCAGCTGCCTCAGTGGAGCCCTGCCCTCGCTCCAACGCCATGGCCACAGTGAAGAACGGGCTGCTGTATCTGTATGGGGGGATGTTCGAAGTGGGAGATCGCCAGTTCACGCTCAATGATCTCTACGCCATCGACCTGCACAAGATGGACGAATGGAAGGTTCTCGTGGAGATGGATCCCAAAACGCAGGAGTGGTTGGAGGAGACTGAATCGGAGGAGGAGGGTGAAGAGGCTGAGGGTGCAATAGGTGGGAATGATGAGGAAGAGGATGAAGAGAGTTCTGATGAAGAAAGCGAAGAAGAAGacGAGGATCATCCTCCTGTCAAGGCGGGAGAATCATACCCTGACTATGAGAGCCGGACAGAACAGTACTGGCTGAAACTTGCCAGGGTGAATATGGGCCCTGACGCCAAGGAAAAGAAAGTGGTAAAGGTGTCACATGCCATGGTCAAGGTCTATTACGATGAACATAAATCTGAACCACAGTGAGCTGACTGACTTGCTGGTGgtttgtattgctttcattGGCTGTGGCCTTTCCTGGTCCTTGCAGGACAATGAGCAACTTTTCACCAGCTCATGCCTGTTATTCCCTCAGAAAGGACTGGACACAGGCTTTACGAGTTCATtgctttgtttgattgtttgttttcttcattattatttcacaacGAACAAATGTGTGGTTGTCTGACTTACAAGGAATGCGACATATTTCCCTTTTCTAAACGACTAATGGTGTTGGAAAATACTGGACAAAAAAGTTAATCTTACTCCTGTTTGtgccttttttaattgcagagaaataaaaaaatgtttgtctaGGTTCAACTGAATACATTAGactttccatttgtttattttgtcattggacaaaaacgtttttttttttttttaaatggcccTAATGAGGTGCTGTCCCATCCCTTCTAAGTACAAACCAgtgaacttttcttttttttatacagaCTAACTCTTCGCCCCATGTTCTGAACTGTTGTAACACAATCTATACCAGGACTTTAATGCTGTATTGTTTATTGGTTACTGATCTGTGTATAGTAACCTGGCGCAGCTTTGCAGACGGAGGCACAGGACAAGGGAGAAGTTCATGCCtcagaaaatgatttaaacatgTCTTCTAATAAACCATACTGTAATCTTCTTCTTTTACTGTGAAACTTGGGGTTTTATACAACATCAGGAACTACACGGGTGTAGTCTGTGTTGCTCTCCGACAAACCTTAATGTTTCTTCTACTCGAGAAGTAATTTGTAAATCAAACCAAACCATCTGTGTTCTGAAGAAGTGAAGCTTCTCCAGCAAAGCTAGTTCTAGAATTTTGGAAGTCAGTGTCcactttcttgtttgtttcattgccTGACTAAAGGCCTTGTTTCAAACCCCAAATATTGCCATTACAGTGGAAACTCCCTCACCTTGGTATCATTTGATGAAGGGGCTCCCCCCAGATGAACTGGA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03410 Base excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020546 True 2742 mRNA 0.48 12 24478501 24508437

Neighbor

gene id symbol gene type direction distance location
AMCG00020545 zcchc14 coding downstream 76702 24401170 ~ 24401799 (-)
AMCG00020544 NA coding downstream 108458 24351481 ~ 24370043 (-)
AMCG00020538 NA coding downstream 149678 24308242 ~ 24328823 (-)
AMCG00020542 NA coding downstream 235858 24236128 ~ 24242643 (-)
AMCG00020541 NA coding downstream 281541 24164670 ~ 24196960 (-)
AMCG00020550 slc7a5,LOC107583127,LOC107701543,LOC107707523 coding upstream 17665 24526102 ~ 24531462 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding upstream 37499 24545936 ~ 24553994 (-)
AMCG00020547 ca5a,LOC102795873 coding upstream 49176 24557613 ~ 24576901 (-)
AMCG00020548 sae2,uba2,LOC107583129,LOC106560931,LOC107707412 coding upstream 69945 24578382 ~ 24586519 (-)
AMCG00020555 NA coding upstream 88074 24596511 ~ 24610073 (-)
G64028 NA non-coding downstream 173566 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 243374 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 245103 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 565280 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1199428 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 177087 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 192696 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 346499 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 436861 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 492910 25001347 ~ 25001657 (-)
G63819 NA other downstream 1316601 23154692 ~ 23161900 (-)
G63679 NA other downstream 1933812 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 2011734 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2345764 22130842 ~ 22132737 (-)
G63464 NA other downstream 3165896 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 139566 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 183456 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 245445 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 602673 25111110 ~ 25119596 (-)
G64247 NA other upstream 612661 25121098 ~ 25139385 (-)

Expression


Co-expression Network