AMCG00020547 (ca5a,LOC102795873)


Basic Information

Item Value
gene id AMCG00020547
gene name ca5a,LOC102795873
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24557613 ~ 24576901 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020547
ATTATctccttcttttttattttgaaaatatggaCAGTCGTTTGCCCCTTCACCCGCACACGCAAACCTAATACGTGCCACAGCAGCAGAAAGTGCAACCCACGGACAGCCACTGCACACGTCCACTCCTCCGCATCGCCGGGCCCGTGTGTGACGGCCAATATTTGGATACTAAACCTGCCCATCTGCGCCGTGAGCGGCCTGTGACGGAAACACGCTCCCTTACGTCGAGGGACAGGATTATACAAACCCAGCCGAAACATGAAACGACGAGATGATTGATAAATCGCCTGGCAGGAGCGGGGAGTGCCGTTTTCCCAAATTTGGAGATTAGTTATcgctttttgtatttatttatgtattattttgtattttaaccgAAGAACAAGAGTCACCAATTTTCGTAAACAATGGTGACTTTATCGGCAATTGTAGCACCGCTGGCTCGTCACCTGAGCAGACGCGCCGGACCTCAGCGATGGATCCCAGTCAGACACTGCAATCTGGTGTCGTGCTCTCGCAAACTTGTGCATTCACCAATGCACCCGATGTGGCAGGGGCCCCTGGAGGTGCCGGGGGGCAGCCGGCAGTCGCCCATCGACATCGCCGTGAAAGAAAGCGTCTTGGACCACCATCTGCACCCCCTGAAAATCAAATACGACCCCAAAACCTGCCAACAGATCTGGAACAACGGCTATTCCTTCTTGGTGGAGTACGATGACACATCGGATAAATCCGTCATCAGCGGGGGACCCCTGGAGGACCAGTACAGACTGTGCCAGTTCCATTTTCACTGGGGAGAGAACAACCACTGGGGTTCTGAGCACACAGTTGACCAAAAATACTACCCTGCTGAGCTTCATCTTGTGCACTGGAATGCAGACAAATATAGTCTGTTTGAAGAAGCAGTGATGGAAGACAGTGGCCTGGCCGTAATTGGGGTTTTTCTGAAGATCGGGAAAAGGCACGAAGGACTTCAGAAGCTGGTGGACGCTCTGCCTGCTGTCCGGCACAAGGACAGTGTAGTTGAGTTCACCAGATTTGACCCTAGCTGTCTGCTGCCCGACAACCAAGAATACTGGACTTACCCCGGCTCTCTGACCACCCCTCCGCTCACTGAGAGTGTGTCCTGGCTCATCATGAAGCAGCCAGTAGAGGTCAGCCATGACCAGTTGGCAGTGTTCCGCAGCCTGCTGTTCACGTCGGCCGAGGAGGAGGTCCAGATGAGTATGGTCAACAACTTCCGCAGCCAGCAGCCACTCCTGAGTCGCACTGTGCGCTCTTCCTTCACGCCCTTCCTGCACAACGACAAGGAGCCTGCGATTCCCGAGGTCCCGCCCAACACCAAGCAGTGACCTCCTCCCAGCCCCCACAGAGCGGGTTTGAGGGTGTCCAATGAGCAGTACAAACTCTTTCGCCTCTTCTCTAGCTAGACCAAATTGACTCCTCCAGGGAGCTTTTCAGATGCAATAAGCCCCAGATCCTGGGACCACAGCTTAGATTCTGTCCTACCTAGTGGTTGCTAATTAGCAGGGAAGGGCCACTCATGAACAGATGCAGCTGGTGGGCGATTTCAATAGCTCAAACTTGCCTGTGTGCACCAACGGTTCAATACAAAGAGAAGTTGATTCGGTATTTCTGCAGACTAGACTCTACATTATCAGATACATACAGTTAAAAATGTCCCATTCATTGTGTTGGTACagtatgtgctttttttgtgctttatttcGCAAAGTTGACCAAATTTGTATAAAATGGTCCACAGATGTTAATACATACTCTGCCAGAGAAAGCTGTAAACGTTTGTACTGTTCATTACTGAAGGCATCTTCTTTTTGAGGCTGATATTTATGTACAAGGAGTTTTATCATCGCAACGGGAACTCTAGTGATCAGTGACTAGTGATCACACCACATGAAACATTGAAACTGTTTGTAAGCTGGGGTTGTGTTACATTCCAAAACTGGAACACTGCAGTAGAATAGAAGGGGGATCCTTTCACTATGGGTGAATTTCTCAAAAACAATCATGCAATACAAAACCATACAAGAACTACACGATACTTACATTTTTCCAAACCCATACCAAATTGCAGATGACAAAAATGTGGTGTAAATAAACCCCTATTTTTGCCATATTTACTCTATACCAGGGGAGCCCAAGACGTCGATCACGGAGTGCTGTCCAGTCGATTGCGAGGTAATACAGAAGTTTTCAAAGTCCATGAGTGAGAGTTTTCACATTCCAGACATGCAGCTCTCCCGCTGGTTAAAgcaagtgtttgtttgtgtttgcatgtattGTGTATTGGGAGCGGGGTGTGTTGAGCATTTTGATAACAATATGACAATGACAGACATCGCTCACGGGGGGTGCAGGGTGCTAACGGAGATTTATGTGATAGATGCATGATACTGGTAGATCTCGTCAGGCAGGCAATTCACAAAGTAGGTCTGATATCGAAAAAGCTTGGGCACCCCTGGTCTACACCATACACTTACACCATATTTGATGTTTTTGAACCAAAACCAGACTTGACCCCTGATTTACAAGTAGCCATGTGTCTGTGATTTTAAGATGTCCATGGGAACCATATCTTTAATATTGCAGaccatgtaaaaataatacaaactgtaaACCCGCTTTTTTATGGTCACTGATATAGGATGTCAGTCGTTCAGCCTCTCACCGAGTGTAGTAAATAGGCTGTTATAATTAACGCACAATTAGTTCTGAATTGTAAATATGCAGTCAATTTATAATTACCCAGAGATCTTTGCATTACCTCACTTGAGTTAGAATCTCTTTTTAATAGGAGTGTGTTTATATGGATTTAAGTGTAACGTAATATATATGCTGTAGAAAAAGATGTGAAAATGCAAATCCTTCTAATCTGAATTGTAGTATTTGAAGAAAATCAAGCAGAAAGCTTAGAGATGTTATTCATATCACAGCAACCACAGATGTGGAAtttggaattaaatatataggGTTATGGCTGGACACTAAATGTTTATCTAGGCAGAGTTTATAACcctattacttaaaaaaaaaaaaaaaagtttaaagatTCCTGCATTTACACTTTTATATTGACCTTACTGGATACAGCCAccccacaaattacaaatgtactCTTTTTAGAAGTGCCTTCTAACGACACAGGGGCTCAACTGTGTTGTGCACAGTATCACTTAGCAGCCTTGGCCAACTCAAGCACAGACCGTATGTTATCACagtattaattttaacattttacttttacacCAATGTGCTATTCTCCAACTCTTAATTTTACAACAGTTGATATTTTCCACATTAACAGCCTTCTTCCTTGACTAGATAGCAAGTACCAGTGTAAATGTCTAATAGGACACCATGCCTTTATAGACTCTACAGTGTCCTTACTGACATTATTTGCTGGCTATGTCTGGACGTGTAATCGAAACAATTAAAATCGTAAAGTATCTTGGGAGAGAGTGAGATAAACTCATTCCTCAATAACCTTAGACAAACTGGCACCAGCTGTCAATGGCTGGTAACCTCTGTATCCGAATGATCAGTTCATTTTGAGAAGAGCTGTCTTAACCTGATCCCAGTTTGTCATTTTCAGAGGCTTTTGTGCTCTTCCAGCTCTTCCAGATGTTGCCTGTAAATAGGTTAAATTCCCCTCTAAAGAAGAGCCTCTCGTGTTTCTCATGACTTCGATTTGGTTAGGTCTGATCAAGTGTGTACAGAGAATTACTCTGGCTGCTCTGGCATCAACACTTAGCTGTTTCAAAGGTTTGGCAGGATGAATCTTAAGAGTCTTTCAAACTAATTATGGATTACACAaatcaaagtttaaaaataaagggaaagCTGTTTAAGATCCCTTAATTTATGctttctctcagtctctgtgtACTGTTATGTGACAGAGGACCAAGAGGTCTATTGATAAAGCACGGGAACATCCCTAATATTAATGAGACGTACTGGACTGGCAATGCTGTAGGAATCCCTTCCCTGCAAAGCAACAGTCTCTCTACATGTAAAGGTTCTTGCAGCAGTTTCATGGAAACCGAAGCAAGCCTTACCTTTAAGCAACCTGCAATTACTGGCTTACTTCATTGCTGGTGGTTTGCTAAGTGTTGTTATTATATGTAACATGGTGTGTTAACTTACATAGAAAATCCTTTGTTGACTTAGACAAAGTgtttaagcttttaaaaataacgtGTTCAGTGCTGTACAAATGTGATCTAGTTGTGGTAATgcctaacttttttttttcttattcttttgaGGATTTGCCTCCTTGATATAACTTAACCTATAACCACTTAATGATTATCTGGAGTGCTAGGCTTATTTTTCATGTTGAAATTACCCATAGATGGGCTCTAaagtttccttttattttatgatgttgATGAGTATTTTATCTAATCAGAGGTTTAATGATTTTTGCTAGTTTTAGGGATGATCAGTGTAACCAGGGGATTTATTAAGGTGCAGGGATCATACTTTGAACTGAGGATTATAGTTTTAAAACCATGTATTCTAGAAAGTGAATTAATGTTAAACagaattactttaattaaacaaacaacaaatctaGTCTTGAATATACAGAAAAGACTTAAGTCATAATTTCAAGGGATTAATTTGTGATACTGTAAACCATATGCATACTTCTGAGATGCGTGTCTTATAAACAAATAGGATAAACACAGGCAGTCTTTAAACCAACATCGCCTGTTACACATGGCATTAACTTATTTCTAGCAGGTCTTTTTCTGGATCCTTAACAGATTTTCTTTCCTACTAAACTTCATATGGGCCtgctttattttaactttttaaataatttgaataaggTCTTGTTTTCTATTGTATGAATACAAGCACCTCTGATGGTTTATTCTCtttttgacagtttttctttgttttatcaATTTAGCATTATTGTACAAAATAGGTTGATGACTAAACTGTAATGGCAAAAAACTTTAAAGTTGGCTCCAAGGTTGACATTTTGTGAATGCTGAGCTTTATAAATGGAGCCATTGTGTCCATAATGTTTCATATGGAAATAAAGggaaaagtattttcaaagaGTGCTTAAAACCTTTTGCAACATAACACCTGTGTTTTTTCCTGATTAAAATGGGCTTAACACTTTGCCCTGTTTGTTATTCATGTGACTGTagagcaattaaattaaaaatgataaccAATCctgaatatttgtgttttctacCTGGCTCATATCAATTCACCATTTACTTTTCTTGGggctcattaaaaatataatttcagccAGATATATTTGCAAccataaaagtaaataattgtatttgtagtgtttaagacttatatttttcaaagctcCATAgaccaaaatgttttcttttgctgctgttttattaGGATTGCTTAATTTCCTTGTATATTAAAGTGTCTTCTACAATGAGATTGCACATTGCATACTTtgcatgtgtgcatttattaGCCCTGCTGCAAGAATGTCACTTGGGAAGTTTTTAAACCATTAGGCACTGTCAAACATACAACAGAACTGTATAATCacttcaaaatgtgtgtttgtttgtgtctgtatgaCATGTATGCTAGTATCAACTTTAACACACTGACTGCCACCCAAAGTTTAGAGGTCTGTTTTTCTGGTTTCATATTTGGCCTTCCTACTTCAGTGTTGGTTATCAAACTTaaagagtattttaaaaatggaaatcttaaacatactgttttttttgtggaggtgtgtgtgtatgtatatatatatatatatatatatttctgaggGAAGggttttatgtaaaaatgactacatctggttaaaaaaaaacaaattattgatAACCACATAAGTCTATCAAAATACTGTGCATAAACTAGTCATATGAAACTTTTAAAGATCTCTTcacataaatcaaataaaattatgcGGTTTTACAGAACTTGTGAAACCAGGTTTACCaccaaaacttattttaataggTCAACAGAGCTTCACAAAGAGATCTCCGATAACAAccacacattcatttaaaataatttttgaaGCTATTTCCATGAAAGCGACACTAAAAGCCTGTTCTCAGACATGGttgttgtttcatttcaaaattcTGAATtccctttaaagaaaataatttgcctaaagaggaaataaaaagaaagggtcttctgaacacacacaacCTTCAAAACCCTAATAATCAAACAATTTTAATGTGTTAACCTCGGAGTTCTTCATGTGaggtgtttgtttatatagatGATGCATTTATCCGGGATTCAGACTTCATGTGAAGGGCCcgggttcctaactgttttctGAATGGTTTAGGCATTCCTATATTCCTCCTTCAGGACAAGAACTTCATTGTGGTAACCCAAGCAGCCTTATTGTTCCATAAACATCATAcagttcaaaataatgtatctctTGTGCTTTGTCACCCAGCACTGTACATCTGGAATCCTTGAGTTTTAATGGGTTACATTAATGCACTGTTAACACTGAATACTTGGGAGCAAGAATGGAATCTGCAGTCTAACCTttctttttattgaattatattttccaaatatgaaacatttgaagatatactaatttttttgtttgcttcattCAATTCTATTTCTTAATACTACTTTTGACGACTCTATTCTCATAACTGTGTATTTCTGATCTCCACAGATCAATTGTTTGCCATCTTAATTCCTATATATATTGAAACCTTGATCAATTAATGATTTAACTATAACGTGGAATAACAAGCAGTTAGATTACCCTCAACCAAAGGTCCACCTATTTATAGGAGTCTGTTTTCAAGTTGTATGGTTCCCACCGCTACAGTGAATCCCAAAGCTGCTGAGCACAGCAATGCTTACTTCCTCTGTATCTAAATTAACAATTGTCATTAAAGAGTTGAAAGCAAAAGagggttatttgtttttttatggggGGGTGTTGAACTATAAGCAGATGAATATCACAGTTTGTTTCTACAGTCAGATCTAAGTGGGTTTATAGAAGGAAGGAATTCTGTGACATTAGCA

Function

symbol description
ca5a Predicted to enable carbonate dehydratase activity. Acts upstream of or within ion homeostasis. Predicted to be active in mitochondrion. Is expressed in axial vasculature; brain; endocrine pancreas; pancreas; and posterior pancreatic bud. Orthologous to several human genes including CA5B (carbonic anhydrase 5B).

NR:

description
PREDICTED: carbonic anhydrase 5A, mitochondrial isoform X2

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020547 True 7077 mRNA 0.39 7 24557613 24576901

Neighbor

gene id symbol gene type direction distance location
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding downstream 3619 24545936 ~ 24553994 (-)
AMCG00020550 slc7a5,LOC107583127,LOC107701543,LOC107707523 coding downstream 26151 24526102 ~ 24531462 (-)
AMCG00020546 NA coding downstream 49176 24478501 ~ 24508437 (-)
AMCG00020545 zcchc14 coding downstream 155814 24401170 ~ 24401799 (-)
AMCG00020544 NA coding downstream 187570 24351481 ~ 24370043 (-)
AMCG00020548 sae2,uba2,LOC107583129,LOC106560931,LOC107707412 coding upstream 1481 24578382 ~ 24586519 (-)
AMCG00020555 NA coding upstream 19610 24596511 ~ 24610073 (-)
AMCG00020554 NA coding upstream 54478 24631379 ~ 24636351 (-)
AMCG00020565 NA coding upstream 215041 24791942 ~ 24800783 (-)
AMCG00020564 NA coding upstream 237865 24814766 ~ 24821061 (-)
G64028 NA non-coding downstream 252678 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 322486 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 324215 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 644392 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1278540 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 108623 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 124232 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 278035 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 368397 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 424446 25001347 ~ 25001657 (-)
G63819 NA other downstream 1395713 23154692 ~ 23161900 (-)
G63679 NA other downstream 2012924 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 2090846 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2424876 22130842 ~ 22132737 (-)
G63464 NA other downstream 3245008 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 71102 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 114992 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 176981 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 534209 25111110 ~ 25119596 (-)
G64247 NA other upstream 544197 25121098 ~ 25139385 (-)

Expression


Co-expression Network