AMCG00020554


Basic Information

Item Value
gene id AMCG00020554
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24631379 ~ 24636351 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020554
CTTGCATACATCACAACCCGGGGGGGGTTTCTGGATGCAATGCCAGGTCCGGGACCGTGTGGATGTCTCATTGCCATGCAAAGCCGGATCTCAGAGTCTTTGATTGTGTGCAGTTTTAAGAAATGACCCTCCCCCATCAGATGTGTGGGTCCACTGCTTAGCTACAGAAATGCACAGAATATACCTGTGACAAAACGCATTGCTGTGGGGGGACCGCAACGCCTGACCACACCCGGAAGTGCGACATTTCCGAAATGAAGTTTGAATATCCAGTCTGAGATTACcatcaaaaacataaacaatgcGCATGTGTTCATTGTAAACGGCATCACTTTAAAGTCAGTGGTATGTTGGTCGGCTACAGCAGCAGTTCCGAAGATGAAAACGAAAATGTAGGGAGTGAGAAACGAAAAATAGGAAGTTTACAAAACGACGCAACACTTCCCGATTGTAAAAGGCACAAGTGTTCAGGACCACTAAATAAATTCCTGGGAAAGAGAGATGATCTGTCCTCTCACACATGTCGCTCCCGCTTGCCTGTACCGGGAAGCGTGTTGGACATGTTTAAGGAGTCGGGAAAAGACTCGCTTGAGGATCCTTCCAAACATGAGGGACGGATACGCTCCTTCAGCCATGAGCGTGGAAACTGGGCCACTTATGTGTACCTGCCCTACATGCCCGATGAGGGATTCGTGGAGCTGGCCGAGAAGCTGACTGGCACAGCAGGGGCTCGAGGGGTGGCACTCATTAGAGCAGAAGAGTTTCACATCAGCCTCTCCCAGACTGTTGTGCTGCGTCATCACTGGATTGAACCCTTTGTAGTGTCACTTAAAACAGACCTGGCAAATTGTCAGAAGTTTGTATGTGTGGCAGAGAGACTGAATGTTTACACCAATCAGGAGAAGAACAGGACATTCCTGGGTCTGGAGGTGACCACTGGACATTCTCAGTTGTTGGAAGTGGTGTCAAATATTGATCGGACCATGAGGGAGTTCAGCCTGAGCACTTTCTATGAGTTCTACATTCCATTCTGGACCTTGCTTTCTTTGTTGTATGTGAAGTACACAAATGTTGTAGTTCGCCAAGAGCACAAGATGAAACCATCGTTCCATTTGAGTCTGGCCTGGTGTGTGGGGGACCACACAGAGGAGCTGACACGGATGTGCAGTCAGGAGCTGCAGAGCCTACTTGACGATTATGAAGACAGTCCTTTCCTGCTGAGAGTGCCCTGTGAGGAAATCCGCTGCAAATCTGGGAACAAGATTTTCTCCTTCCCAATGCACTGATGATGAGAGCACTGAATTCATAGTGCAGTGATGAAAGGGAATTATTCTAAAACTACTTTGTATCATGTATTCTctttacagtgttttaaatcCTACATTAAGAGCAAAAAAAGACTAAGTTGAGATCTTGAGATTTATAgctatttaaacaataaaata

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
K23093 USB1; U6 snRNA phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020554 True 1445 mRNA 0.46 9 24631379 24636351

Neighbor

gene id symbol gene type direction distance location
AMCG00020555 NA coding downstream 21306 24596511 ~ 24610073 (-)
AMCG00020548 sae2,uba2,LOC107583129,LOC106560931,LOC107707412 coding downstream 44860 24578382 ~ 24586519 (-)
AMCG00020547 ca5a,LOC102795873 coding downstream 54478 24557613 ~ 24576901 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding downstream 77385 24545936 ~ 24553994 (-)
AMCG00020550 slc7a5,LOC107583127,LOC107701543,LOC107707523 coding downstream 99917 24526102 ~ 24531462 (-)
AMCG00020565 NA coding upstream 155591 24791942 ~ 24800783 (-)
AMCG00020564 NA coding upstream 178415 24814766 ~ 24821061 (-)
AMCG00020566 znrf1,LOC106573647 coding upstream 206659 24843010 ~ 24846428 (-)
AMCG00020575 NA coding upstream 310870 24947221 ~ 24950873 (-)
AMCG00020574 NA coding upstream 336398 24972749 ~ 25001128 (-)
G64028 NA non-coding downstream 326444 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 396252 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 397981 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 718158 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1352306 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 49173 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 64782 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 218585 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 308947 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 364996 25001347 ~ 25001657 (-)
G63819 NA other downstream 1469479 23154692 ~ 23161900 (-)
G63679 NA other downstream 2086690 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 2164612 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2498642 22130842 ~ 22132737 (-)
G63464 NA other downstream 3318774 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 11652 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 55542 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 117531 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 474759 25111110 ~ 25119596 (-)
G64247 NA other upstream 484747 25121098 ~ 25139385 (-)

Expression


Co-expression Network