AMCG00020561


Basic Information

Item Value
gene id AMCG00020561
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24648003 ~ 24677810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020561
ATGGATGAATATCCCGCCGCCGTGAAGCGCTATTTTGCGCCCCCCCGGGCAGGACTTAAAGCCTGCAAGCGCAAAAAAGCTACAAGAGGAAACCGGGGAAAATACTCTGGAGGTCGGATTCGGGGATCTCTTTGGGAACCCCCCCCGGTCCGTACTGCAGGGAACCGGATTGCGGCAGAAACACCCGGAAACGATCGGGAAGAGTGGCGACGGATGGAACGGCGTAGCTTCTCGGGCCGTAAAGAACGCGTAGTGAAATCACACGAGAACTCGTTACAGCGCCATCCACCGGGGTGGAGGACTAGAGAGAATGCAGCGCCaagCCGGGCCCGGGCATCTCCACCGCCGGCCGAGCTCAGCGCACAGCAGCCGGCCCAGCTTGTGGAGGAGCTCAGTCGCTCCAATGCTGCTATCAAGGCAGAGAATGAGTTGTTTGAGAGGTTTATAAGCCGCCTCAACCCAAAGGACCTGGAGCcactggcccccacagagccctctATTGGCATGTCCCAGACAGAAGTGTCTCAGGTTCGGAGCAGGAGCAAGTCAAAGAGTCGTTCCTTCACCTCTGAGCACCTAGTGCAGCTGACAGTGGAGCAGAAATGCTACATAGCTcagcaggagctggaggagatgAATAAGGACTTGAAGAGACTTCATGAGGGGTCAGAGCGAGTCATTGGCAACTACAAGGCCACCATAGAAGAGGCAGATATGCGGCTGGGTGAGATCAAAAAAGCTCAATATGAGTTTGACCGTGAGATTGCGAAACCGCTGCGGGAGAAGAAAGGGGTCATGATGGGAGCCGAAAAGGTCAATCGTTACTTTGAGGACCGAACCCGGGCCAAGGAGACCCTTGCAGAGAAGCTGCGACTGAAAAACGCAGCCCTGAGAGTGCAGAAGAAGAAGCTCCAAATGCAGCTAAAACAGAAGGAAGAGATGGATGAAGCTCTGCACGAGGTGGACTTCCAACAgttaaaaattgaaaacagcCAATACCTAGAGAAGATAGACGAGAGGAACCAGGGCCTCCTGAATTTCAAGCTTCTGGCTGGAAACGCGCTTCAGGTCCTCAACTCTTACAAGAAAAAGCTACAGAACGCAAGCTACGAATCAAGCCAACTTGACAGCGAGATCTCGGCCCAGAATGAAGTGCTGGGGAAGATAGAGAGTGAAAGCCTGCAGGCAGAAGAGGAGCGAGCCAAGGCAGAGGCTGAGAACCAGAGACTGCACAGTCAGCTGTCTGAGTACCATGTGCCAGATGTTCTGGAGTATGTCAAATGCAAAGCTAGCCATCGTGAGCTGGAGCAGGGTGTTCGGGTGTGGGAGCGAAAGGTGGAAATCGCAGAGATGGCCTTGCAAACCCACCTTAAATCATGGAACAGACTTAAAGCCTCAAGCGACCCATAG
>TU80215
acaatacagctaCCTGTATTTACTTACAcataatgtaatacataataTTCCTCACCTCCAGTTGGGCATATGAGCTTCATAGTCCCAGTACTCTCTGCTCTTCAGAGTGTTGACATCGGCGTACACCCGAGATTTGCTACCGGCCGCCGGGCCGGGCATGGCGGGCGAGGGAGCTCGGTCTAGGAGGGGCTCGGTTACAGCaggtgtgtttgagagagacgCTGGGAACGCACAACAACGGATTGCAATCGGAGTCGGGACGGTGTCGTCCAAATACAGCGAGCTGTTTTCGGGTACGTTATCCCGGGGGAGGTGGGCAACGTGTCCTGAAAGCTTACGGCAAGGAGGGATCACCGCCCGGAACCTGAGAGCTAAGGCGACCGTGGATCCAAGCTTCAAGACCCGGGCTGGAGAAGGGAGGAGAGGGATCGCCAGCGTAAGTGAAGCGGTGAGGGCAGGAAAGAAGTAGCTGTGTAGACCTCTGGAGGCGGTGATGGTACACTGGGATTTGAGTTAGAGATTAAAGGGGGAAAAGGACAGGGGGCTGTGAAACTACAGATTGCAGGCTAacccaccccccatccccctctgGGCCTCGAATCTCTGATCCGGCTAAGGGAAATCCCAGTGAGATTCCCCCGGGGCAGGCCCTGGAAGAGGCGAAACGGATCTCCGGGCGTATGGGATGGCGCTGGTGCTGTGGATGTTGACGAAAAACGGGTTTACAATCCAGGGATATAGACAGGATATATGAAACCTGGAGCCGACGGGGGAGAGATCGGTGTTCTCAGAGCCCTGTTTTGATCGGTAGATTGATGGATGAATATCCCGCCGCCGTGAAGCGCTATTTTGCGCCCCCCCGGGCAGGACTTAAAGCCTGCAAGCGCAAAAAAGCTACAAGAGGAAACCGGGGAAAATACTCTGGAGGTCGGATTCGGGGATCTCTTTGGGAACCCCCCCCGGTCCGTACTGCAGGGAACCGGATTGCGGCAGAAACACCCGGAAACGATCGGGAAGAGTGGCGACGGATGGAACGGCGTAGCTTCTCGGGCCGTAAAGAACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020561 True 1410 mRNA 0.54 10 24648003 24676995
TU80215 False 1064 TUCP 0.56 1 24676747 24677810

Neighbor

gene id symbol gene type direction distance location
AMCG00020554 NA coding downstream 11652 24631379 ~ 24636351 (-)
AMCG00020555 NA coding downstream 37930 24596511 ~ 24610073 (-)
AMCG00020548 sae2,uba2,LOC107583129,LOC106560931,LOC107707412 coding downstream 61484 24578382 ~ 24586519 (-)
AMCG00020547 ca5a,LOC102795873 coding downstream 71102 24557613 ~ 24576901 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding downstream 94009 24545936 ~ 24553994 (-)
AMCG00020565 NA coding upstream 114132 24791942 ~ 24800783 (-)
AMCG00020564 NA coding upstream 136956 24814766 ~ 24821061 (-)
AMCG00020566 znrf1,LOC106573647 coding upstream 165200 24843010 ~ 24846428 (-)
AMCG00020575 NA coding upstream 269411 24947221 ~ 24950873 (-)
AMCG00020574 NA coding upstream 294939 24972749 ~ 25001128 (-)
G64028 NA non-coding downstream 343068 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 412876 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 414605 24232716 ~ 24233398 (-)
G63921 NA non-coding downstream 734782 23912862 ~ 23913221 (-)
G63858 NA non-coding downstream 1368930 23278792 ~ 23279073 (-)
G64120 NA non-coding upstream 7714 24685524 ~ 24687760 (-)
G64126 NA non-coding upstream 23323 24701133 ~ 24701336 (-)
G64170 NA non-coding upstream 177126 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 267488 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 323537 25001347 ~ 25001657 (-)
G63819 NA other downstream 1486103 23154692 ~ 23161900 (-)
G63679 NA other downstream 2103314 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 2181236 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 2515266 22130842 ~ 22132737 (-)
G63464 NA other downstream 3335398 21312202 ~ 21312605 (-)
AMCG00020559 NA other upstream 14083 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 76072 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 433300 25111110 ~ 25119596 (-)
G64247 NA other upstream 443288 25121098 ~ 25139385 (-)
G64260 NA other upstream 531249 25209059 ~ 25211063 (-)

Expression


Co-expression Network