AMCG00020565


Basic Information

Item Value
gene id AMCG00020565
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24791942 ~ 24800783 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020565
AGCAAAGAGAGCAACAGATGAAGCTTAAGGCTAACAAGTCCACTGCTGCTGGAAATGAAAGGGGAGCAGTCGTTTATACTTTGTACATACAAGTGTGCTTGAAACAGTTGTCCCTGCCAGTCTACCAGAGGCTGCACCATGTTGCGGATTGGCCTGCGGAGATCCCTGCTGAGTGTGTGCGTGCTGGCAGTGGTCATGATTGCTTTCGGTCTAATGCAGGTCAACCTGCTCGACAGAAAGCCTCTCAAACCACTGCTACAAAGAAGAGATCCCCCAGTCTCCATTCAAGAGCTCCTACACCCCAGGCAGCCAAGGAAACCAGACCCCCTGAGGGTAGACCCTGGTAGAGATGGCCAGGCCAgGGGGCACAAAGGCTCAGAAGATGCCCAGAGGAAGGGGTCAGGAGAAGCACAGGGGTGCCTGACCTCCGGAAGGCCATCCCAAGAGAAACTGGGAAGGCTGCTTGGCTCAGGCAGAAAGCCAGACTGGCTGAGTCCTCGAGATCAGGAGACAATTATGTGGTTGAGAGAGGGCTCTGTCCGCAAGGTGGATCGCCTGTACCCCCGGAGAAAGATGGCTAGGGTTGTGCTGGAGCTGGACACCTCTCAGTTGGTGGAGGACAACAGGGATTACTGCGGCCAAGGTAGCTGTGCCTTGGTGAGGGAGACGGGAAACCTGGACGCCATGCTGAGGTTCCACCTGGACCGGCTGCTGGGACTGGAAGTGGTTCCTCCTACCACCGCTCGCGTGCTCTCCACCTGGCTGCTGCCTTTCCACTACACAGACGGGCGACCCCACGCACTGAGCTGGTCGAACCCCTTCCCAGGCTGGGACTGTGAGGGGGGACCGCCCTGTGAGGGAGGAGAAGGCGGCAGTGCCCAGCGCCTCCTGGATTATCTGTTGCAGGGACCAGATGGAGGAGTAATGACTTCTGACAGGCAGGATGAACTTGTCACGGGGATGACTGAACAATTTGAGCACGGCCGAGCTCGCATTGACGTCAACCAGCCAGCCAGCTCTGTGAGCGGATCTGAGAGCAGCAGACAACACTGCAGAGGAGCGGAGCGCACCGCACCGccccgcaccgcaccgcaccgcaccgcaccgccccgcaccgcaccgcacagCACCCCCAGCATCCCGCACACACAGCACCAGGGCATGCCCGGCACAGCGGCTGCACAGACACACGCTTCCCCGGCTCTGAGCTGcgcacacacagcactgacagcagCTCCCTCTCCTCCCGACGACAAGCAA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020565 True 1260 mRNA 0.60 5 24791942 24800783

Neighbor

gene id symbol gene type direction distance location
AMCG00020554 NA coding downstream 155591 24631379 ~ 24636351 (-)
AMCG00020555 NA coding downstream 181869 24596511 ~ 24610073 (-)
AMCG00020548 sae2,uba2,LOC107583129,LOC106560931,LOC107707412 coding downstream 205423 24578382 ~ 24586519 (-)
AMCG00020547 ca5a,LOC102795873 coding downstream 215041 24557613 ~ 24576901 (-)
AMCG00020549 slc7a5,LOC107707523,LOC107583127,LOC107654150,LOC107581836,LOC107714008 coding downstream 237948 24545936 ~ 24553994 (-)
AMCG00020564 NA coding upstream 13983 24814766 ~ 24821061 (-)
AMCG00020566 znrf1,LOC106573647 coding upstream 42227 24843010 ~ 24846428 (-)
AMCG00020575 NA coding upstream 146438 24947221 ~ 24950873 (-)
AMCG00020574 NA coding upstream 171966 24972749 ~ 25001128 (-)
AMCG00020592 polr2c coding upstream 525010 25325793 ~ 25329845 (-)
G64126 NA non-coding downstream 90606 24701133 ~ 24701336 (-)
G64120 NA non-coding downstream 104182 24685524 ~ 24687760 (-)
G64028 NA non-coding downstream 487007 24304484 ~ 24304935 (-)
G64013 NA non-coding downstream 556815 24233642 ~ 24235127 (-)
G64012 NA non-coding downstream 558544 24232716 ~ 24233398 (-)
G64170 NA non-coding upstream 54153 24854936 ~ 24856624 (-)
G64186 NA non-coding upstream 144515 24945298 ~ 24946210 (-)
G64213 NA non-coding upstream 200564 25001347 ~ 25001657 (-)
G64218 NA non-coding upstream 251421 25052204 ~ 25052452 (-)
G64221 NA non-coding upstream 263353 25064136 ~ 25064342 (-)
AMCG00020560 NA other downstream 15533 24753882 ~ 24776409 (-)
AMCG00020559 NA other downstream 92995 24691893 ~ 24698947 (-)
AMCG00020561 NA other downstream 114132 24648003 ~ 24677810 (-)
G63819 NA other downstream 1630042 23154692 ~ 23161900 (-)
G63679 NA other downstream 2247253 22543842 ~ 22544689 (-)
AMCG00020581 NA other upstream 310327 25111110 ~ 25119596 (-)
G64247 NA other upstream 320315 25121098 ~ 25139385 (-)
G64260 NA other upstream 408276 25209059 ~ 25211063 (-)
G64271 NA other upstream 441386 25242169 ~ 25242511 (-)
AMCG00020589 NA other upstream 471810 25272593 ~ 25284209 (-)

Expression


Co-expression Network