AMCG00020581


Basic Information

Item Value
gene id AMCG00020581
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25111110 ~ 25119596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020581
CTGCAGACTCTCCACACTGAGaaactcctctcctctccatctctccagaGCCGCTGAGAATGAACGCCCTGACCTGCGCCCTGCTCCTCACTCTGCTCTGCACAGTGCATTGGGCTTCCTCTCAGCCTCAAAGCACAAACGCTGGCAATCCATGTTGCCCAGAATTCATCAAACACAGAATCCCTAGGGATGTGATTGTATCCTACTGGAAGaccagcagcagctgcagcaaatCTGCAGTCGTCTTTGTGACATCCCAAAAACAGATGTGTGTGGACCCCAGCCTGCACTGGGTAAAACATCATATGAAATATGTGGACCAGAAGATGAAAACATCCCCCACAGCCAGGCCCTCCACTGCCACGAAACAGTGATGTTGAACTTGAAATTCAATGTATCTGCAGTCTGTTTCCAAACAGAAGTCTATATTAGTTAAGATCTTCTCAGGTTCTGATTCTTTCTTAACACAGTAGCATTAAGAGCAATTTAGGCCAGAAAACTCAATCCATTGCCGTGTATcaattgtacatattttatttattttacttttattttatttgcatggatttggttttgttcaggtgcatattttcaaaaagaatatttaattaagtgattcttcaaaacatttatagATAGCTAAAATAAGACAAATTGTATAATTCTCCAAATTGTATAGTTtttcatatgtttatttttataattggttatccttgtttttcattaggaataatgtattgtatttgtattttc
>TU80345
CAGTGACTTCCTGTTATTCCTCTATAAAACAAGCACAAGTGTGGAGGGAGGAAAGAGCCCAGAGCTGCAGACTCTCCACACTGAGaaactcctctcctctccatctctccagaGCCGCTGAGAATGAACGCCCTGACCTGCGCCCTGCTCCTCACTCTGCTCTGCACAGTGCATTGGGCTTCCTCTCAGCCTCAAAGCACAAACGCTGGCAATCCATGTTGCCCAGAATTCATCAAACACAGAATCCCTAGGGATGTGATTGTATCCTACTGGAAGaccagcagcagctgcagcaaatCTGCAGTCGTCTTTGTGACATCCCAAAAACAGATGTGTGTGGACCCCAGCCTGCACTGGGTAAAACATCATATGAAATATGTGGACCAGAAGATGAAAACATCCCCCACAGCCAGGCCCTCCACTGCCACGAAACAGTGATGTTGAACTTGAAATTCAATGTATCTGCAGTCTGTTTCCAAATCAGGTTCTGATTCTTTCTTAACACAGTAGCATTAAGAGCAATTTAGGCCAGAAAACTCAATCCATTGCCGTGTATcaattgtacatattttatttattttacttttattttatttgcatggatttggttttgttcaggtgcatattttcaaaaagaatatttaattaagtgattcttcaaaacatttatagATAGCTAAAATAAGACAAATTGTATAATTCTCCAAATTGTATAGTTtttcatatgtttatttttataattggttatccttgtttttcattaggaataatgtattgtatttgtattttct
>TU80346
TCAGCAAGAGAACCAATTGCTGGCAATCCATGTTGCTCAGATTTCATCAAACACAGAATCCCTAGGGATGTGATTGTATCCTACTGGAAGaccagcagcagctgcagcaaatCTGCAGTCGTCTTTGTGACATCCCAAAAACAGATGTGTGTGGACCCCAGCCTGCACTGGGTAAAACATCATATGAAATATGTGGACCAGAAGATGAAAACATCCCCCACAGCCAGGCCCTCCACTGCCACGAAACAGTGATGTTGAACTTGAAATTCAATGTATCTGCAGTCTGTTTCCAAATCAGGTTCTGATTCTTTCTTAACACAGTAGCATTAAGAGCAATTTAGGCCAGAAAACTCAATCCATTGCCGTGTATcaattgtacatattttatttattttacttttattttatttgcatggatttggttttgttcaggtgcatattttcaaaaagaatatttaattaagtgattcttcaaaacatttatagATAGCTAAAATAAGACAAATTGTATAATTCTCCAAATTGTATAGTTtttcatatgtttatttttataattggttatccttgtttttcattaggaataatgtattgtatttgtattttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020581 False 753 mRNA 0.39 3 25111111 25112487
TU80345 True 791 TUCP 0.40 4 25111110 25112551
TU80346 False 605 lncRNA 0.35 4 25111110 25119596

Neighbor

gene id symbol gene type direction distance location
AMCG00020574 NA coding downstream 109982 24972749 ~ 25001128 (-)
AMCG00020575 NA coding downstream 160237 24947221 ~ 24950873 (-)
AMCG00020566 znrf1,LOC106573647 coding downstream 264682 24843010 ~ 24846428 (-)
AMCG00020564 NA coding downstream 290049 24814766 ~ 24821061 (-)
AMCG00020565 NA coding downstream 310327 24791942 ~ 24800783 (-)
AMCG00020592 polr2c coding upstream 206197 25325793 ~ 25329845 (-)
AMCG00020591 LOC102778684,LOC107573013 coding upstream 211477 25331073 ~ 25348318 (-)
AMCG00020594 gabarapl2,LOC107560072 coding upstream 353659 25473255 ~ 25479762 (-)
AMCG00020597 NA coding upstream 431994 25551590 ~ 25552969 (-)
AMCG00020595 chmp1a,LOC106573671 coding upstream 445987 25565583 ~ 25574610 (-)
G64238 NA non-coding downstream 10023 25100037 ~ 25101087 (-)
G64235 NA non-coding downstream 16784 25094031 ~ 25094326 (-)
G64221 NA non-coding downstream 46768 25064136 ~ 25064342 (-)
G64218 NA non-coding downstream 58658 25052204 ~ 25052452 (-)
G64213 NA non-coding downstream 109453 25001347 ~ 25001657 (-)
G64258 NA non-coding upstream 83528 25203124 ~ 25216693 (-)
G64274 NA non-coding upstream 142330 25261926 ~ 25264235 (-)
G64340 NA non-coding upstream 341831 25461427 ~ 25461642 (-)
G64341 NA non-coding upstream 343944 25463540 ~ 25464116 (-)
G64342 NA non-coding upstream 345281 25464877 ~ 25465350 (-)
AMCG00020560 NA other downstream 334701 24753882 ~ 24776409 (-)
AMCG00020559 NA other downstream 412163 24691893 ~ 24698947 (-)
AMCG00020561 NA other downstream 433300 24648003 ~ 24677810 (-)
G63819 NA other downstream 1949210 23154692 ~ 23161900 (-)
G63679 NA other downstream 2566421 22543842 ~ 22544689 (-)
G64247 NA other upstream 1502 25121098 ~ 25139385 (-)
G64260 NA other upstream 89463 25209059 ~ 25211063 (-)
G64271 NA other upstream 122573 25242169 ~ 25242511 (-)
AMCG00020589 NA other upstream 152997 25272593 ~ 25284209 (-)
AMCG00020590 LOC108250636 other upstream 169906 25289502 ~ 25302981 (-)

Expression


Co-expression Network