AMCG00020589


Basic Information

Item Value
gene id AMCG00020589
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25272593 ~ 25284209 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020589
ATGGACTTCAGGCTTGGTATGTCCCTGCTGCTcagccccccagccccccagccccccgaGGAGACTTTGCCCCGGGGCAGCGCGTGGAGGCTCTCGAGCCCCGGTCCCGCCTCCCGCGCGCCTCCCGCACAGCCCGCGCCAGGCTCGAGCTCAGACTGCGCGTTAACCGTCTCCTCGCAGGACAGGGCAGCAATGGGGCACACTCTGAGCTGCCATCGCTCCTCCCGCAAGCCCACCCTCCGCCCACTCAAGGTGAAGCATCAGCTGAGCGCCGCCTGCAACTTCGCAGACCTACAGTCTCCCACTGAGCGTCTGGACCTCAACGTGGCCTCCGAGGAGGAGCTGATGACCCTGCAGGGGGTGGACCGCATTCTGGCCCGGGATATCGTGGCATATCGGGCCCGCATCGGTGGCTTCCGCAAAGTGGAAGACGTGGCACTGGTGACGGGGGTGGGGGCAGCCAGGATGGCGCGGATGAAGTCGGAGGTGTGTGTGACCGAGCCGGGGTCGGTGCCCAACCTCTTCAGCCTGGACCTGCTGTCCACCACCCGTGTGGACGTCAACACCACCTCCACCAGTCACCTGCAGAGTATGACTATGGTGACACCAGAGCTGGCCCAGGCTGTAGTGCTCCACCGGACAGTGCATGGACCCTTTCACAGATCTGAGGAGCTGGGCCATGTCAAGGGCCTGGAGCCCCACCTGCTCACACGTCTCCTCCCCCAGGTCAACACCAGCCGCCCGCGGCCGGCCTCCACCTACACAGACCTGCGCAACGACGGGCTGGCCCGGCCCTGCGCTGCCTTCTCCTTCCATAGCCTCCAGGAGGTGGACTTGGGCCTCCCTCCACGGTGGGCCACTCCCATGCGGCCGCTCTCCCAGCCTTTCTCCGGGGTCTTCAATGAGAGACCTGTGCTTCGGGTGGCCACCTGGAACCTGAAAGAGTTCAGCACAGAGAAGGCCCAGAACCCCGGGGTGAGGGAGGTGGTGTGCCTCACGCTGCTGGAGAATGGCTTTTCCCAGCCAGTGGTGTATCAGTACTTCAGTATAGTTTGTAGCATTCATGGCTATGGTTTGCCAGGTAAATTGGTGTGTCTGGAGCTGGAGAGCCCTAGCACAGCAGCGGTGCGCGAGTGGCCAGGAGACAGAGGGACGTGGCGCTATGTCCTAATGGACCCGCCGCAGGGACAGGAAGGACAGGAAGTGGAGAGGGTGGCCTTTCTGTGGGACTGCAGCTCTGGGCTGGAGCTGGTGCGGGCTGTTACTGTGGAGACGCGTAGTGAGGGGAACGCAAGTCCTCAAAGCCAACCTCTACTGGGCAGCTTTAAGATGGAAGCTCTGGAGTTCAGTGTGTTCAACTTGCACCTCAGACTTGACGCTCCAGTGAGGAGAGGACAGCCCCCCTCCAACCCACAACCTCTGGCCACACTGACGCCTTTCCTTAAAGAGCTGTGTGAGAAGAAGCTTCTAGCCCTTGGTCACATGGGGGCCGGGCCAGAGGCAGGGGGGCTGGCGGAGCTGCGTGACCAAGCCCTGGAGCCCCTAGTCCTCTCCGACTGCCCCACTGAGCTGCCCACACGCGGGACTGAGAGGAAGGGCTGCCTGCAGAACATCTGGGCCAGCCACATGGCCCGGGACACCTACACAGGGCGCTGGGGGGTGATCCAAACTGGACTGTCCAGTCCTTGGATTCCTGATGGATGGTCCTGGGGGGGCAGCGTGTCCAATCATTGCCCGGTGTGGGTGGAGCTGTACATGAAATAGCCAGTTAACATCACAAGTCCTGACGCAGGCAACCTGACAGCTGGGTTGCAGAAAGTTGGTTGAAACCTACAAAAAGGATGTCTTTCCCTAGGAAAGGCCCTTGATTTTGTTCTACTATAGACAACTTTGAGGCTGAAGATATGTCTTCTGTACTGTCCTGGTTTAAGGGACTTGCATGACAATTTATAATGAAGCAACATACCTCCAGCTGCCATGTGGCACATTGCTACTGCATGAAGCAGAGATGCATTCTTTTCTAAGGCTGCTAAAtggatataaaaacatttagccacatatacacaattaaaGAAACTGACTGACTGTTTGAAATAAGACAACATTGACAGTCATGCAAGAAAACCATATGGAATTTCTATCCACAGTTCTGTTCACATTGACTTTGAGAGGAATCTTCAGTGTTTCCTCAGGATCAAACCTGTTGCCACTTTAAAGAGGGACCCTCCCACTTCAGAAACATGTAATAAGTGAGCAAAGATGTGCAAACAGACAGTTCCATTCTACTTCAGAAAACCATCAAACATTACTTTCCTTCATAGGATCTAGGAAGAAGACGTTTCCAGCATCAGATCATAGACACAAATACATATGGCTACCAGGGAGTCTGGTCTACTTGGAATGCAAAATATGCTTGAATTATCTGAGCTCTGGCATGTCTTGTGGTTAGACAGTGAAGTGGTTTTATGCATTATTTCTGAGGGTGatatctattttctttttttgtttctttaaaaatgtcctgCATTGTCTGTGTGAAGATTTTAGTCTCCAGTCAGAGAAACGCTTCCTTAAATAGTTCCCCACAGTGATTGTCCTCTCTCCGCTGACTGGCTCAGTCCGTGCACATGTTTGCAGTGCGCTTTCAGGCACACTTGACTGTGGGCAGGCAGAAAGACATGCTGGGAGGAGGGACCAGTATGTTGGTGAAAACGGGCCGGTACCCTGGCGGCAGAGGTGGGGCGCTCTGCTCCAGCATATCCAGGACTGTCCCGCGCACTTCCCTCGGGACATCTCCCCTAATGTCCATCAACACAGAGATGTGCTCCTCACTGTGGGAtagaggagagacagacacagccAACATAAACACGTCCTTTAAGTCTCTGGGGGAATAAACTGTGTGACAGAATTTTTGGGGATAATTTCTCTTCAgacaagtacatttttaaaagtattaagaTAATTCCCAGATAATGTGGACAATTAGATTGGATGTGAAAACAACATTTCTTTGCCAAACCCTAGaacaaaattattttactttttatgttttattgaatttcatttcagatttatatgtgtgtatatatatatattacaacatAATCTGAACTTTAACTCAGGTTCCCATATGGTTCAACCAGTCTGCATGTTGAGTTTGGGCCTTGAAGTCCAGATATTGTGGGTAGAGGTTTAACTGTCATGAGAACAACTGCCTGAGAACTTGTAACGAGTGACATGGAAACGTTTGAGTGCCAGGATTGGCTGGGTTTGCACTGGGCCAAAGTTTCCTGCAGGACGGCTGCAAAACTGGCTCCCTGTGGCTGACCTAGACCTGCCAGCCTGCAGTGCATCTGTCACTGGCGTTCTGTTCAATGCTACCTTCTGTTCTAGGGCTAAATGTCTGTGGACTTGCCATCTAGAAAAAGCAGGTAGACGAAAAGGACACATTTCAGGGTACATGTATGTTGTCTTCAGTTATCCTCTGCTGCTATGagtgtttcagtattttattaataatttgtgcGTGAAAGGCAAAGGCAAAATTGGTGATTTAAAATAGTTGGGAGCAGGAGTCTTAAGTATTTTAGTGTAAgtgatttatgaaaataaaacctcatGGGCTCCTGTGGAACTGGAGAAAGATGGGAGGGATTACCTGATGTCGGGGTATTTGGCCACTAGTCCAGATACTTCTAGGGTCAGCATGGAGGGGTCCTTAAGGTGGATAATCTCGGCTAGTGCAGGTAGCAGCGCTGTCAGCGTCTCGGTGCCTGGCCTCGCCTGGGGGCTGCTGCTCCTTTGCTCGTCATCCTGCGCACAGACACAGGTGCTTTTCATTGAcacacgctctctctccctgtgggCATGTGTGTCGCAGTGCAGAACCGGACATGTGTCTGTAGCCGTGATATCAATAGTGACCGTGCTGTTCTGTGCGGTGCGGTGTGGTGTAGTGTCGTTACACTGACACTGTGCAATACTGTCATTGTCTGTCTCAGCCACATATGGATTTCAAATCTTCCACTATGTATGCTGTTGTCTCTTTTTACCGTTGTCTGGAAGAGCTCCTGCAGCTGCAGGGCGTCCTGCGCCATCCTGTTGGCCAGCTTGCCACGCTCCTCAGCGCTGCGGCACACCATCCGTTTCTGCATGAGGGCTCGCACGTACTCCACCACCAGGACCCACTGACTCTCCACTctcagcagctgcaggagggggagaggggacaGAGGAGCTGCTGAAATGGAAAAGTACGCCCTAGCCTTGTTTGGTCTCTGTcttgcacacacgcacacacacacacaggcactaaCAAGGCCTCCATGGCTCAGAGGACAGGAGTGCTGTGCCGTGTCTCACCTCTTGGCAGGGTTCTCGGACGTGGCTGTACAGATCACACTGCTGCTCCACGGCTCCACACAGCATGTCTAAGGGCTTGCCGTCCTCCAGCCAGGAGCGACAGAGAACCAGCAGGAACTGGGGCtgcaaagacacaaacacacacacacacaatggaaacTCCTTTCTTCATCACAATGATAGTTCaattacaaagaaaactaaAGTTAGACTACTACTACATACTACTGTTAATGTCCATGTGCTGCAGCTGCAGTGCCTCATGGTGCGAGTCGGTTGTATATTAAGCTGTAAGGACTGCAGTGTCGCTGTCACTGTGAAATCAGGCTGTAGTGCCCCTGTCTCTATGGGCTGGGTGTGTGGAGATCTTGTAATAAACCTCATACAGGTGTTTTGCATCCTGTATACAAA
>TU80414
CAAACCCATTTAACTTCAAATGGTCAACATGTCGCTTGTTTCAGAGCTGTGTGAGAAGAAGCTTCTAGCCCTTGGTCACATGGGGGCCGGGCCAGAGGCAGGGGGGCTGGCGGAGCTGCGTGACCAAGCCCTGGAGCCCCTAGTCCTCTCCGACTGCCCCACTGAGCTGCCCACACGCGGGACTGAGAGGAAGGGCTGCCTGCAGAACATCTGGGCCAGCCACATGGCCCGGGACACCTACACAGGGCGCTGGGGGGTGATCCAAACTGGACTGTCCAGTCCTTGGATTCCTGATGGATGGTCCTGGGGGGGCAGCGTGTCCAATCATTGCCCGGTGTGGGTGGAGCTGTACATGAAATAGCCAGTTAACATCACAAGTCCTGACGCAGGCAACCTGACAGCTGGGTTGCAGAAAGTTGGTTGAAACCTACAAAAAGGATGTCTTTCCCTAGGAAAGGCCCTTGATTTTGTTCTACTATAGACAACTTTGAGGCTGAAGATATGTCTTCTGTACTGTCCTGGTTTAAGGGACTTGCATGACAATTTATAATGAAGCAACATACCTCCAGCTGCCATGTGGCACATTGCTACTGCATGAAGCAGAGATGCATTCTTTTCTAAGGCTGCTAAAtggatataaaaacatttagccacatatacacaattaaaGAAACTGACTGACTGTTTGAAATAAGACAACATTGACAGTCATGCAAGAAAACCATATGGAATTTCTATCCACAGTTCTGTTCACATTGACTTTGAGAGGAATCTTCAGTGTTTCCTCAGGATCAAACCTGTTGCCACTTTAAAGAGGGACCCTCCCACTTCAGAAACATGTAATAAGTGAGCAAAGATGTGCAAACAGACAGTTCCATTCTACTTCAGAAAACCATCAAACATTACTTTCCTTCATAGGATCTAGGAAGAAGACGTTTCCAGCATCAGATCATAGACACAAATACATATGGCTACCAGGGAGTCTGGTCTACTTGGAATGCAAAATATGCTTGAATTATCTGAGCTCTGGCATGTCTTGTGGTTAGACAGTGAAGTGGTTTTATGCATTATTTCTGAGGGTGatatctattttctttttttgtttctttaaaaatgtcctgCATTGTCTGTGTGAAGATTTTAGTCTCCAGTCAGAGAAACGCTTCCTTAAATAGTTCCCCACAGTGATTGTCCTCTCTCCGCTGACTGGCTCAGTCCGTGCACATGTTTGCAGTGCGCTTTCAGGCACACTTGACTGTGGGCAGGCAGAAAGACATGCTGGGAGGAGGGACCAGTATGTTGGTGAAAACGGGCCGGTACCCTGGCGGCAGAGGTGGGGCGCTCTGCTCCAGCATATCCAGGACTGTCCCGCGCACTTCCCTCGGGACATCTCCCCTAATGTCCATCAACACAGAGATGTGCTCC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020589 True 4776 mRNA 0.52 9 25272593 25284209
TU80414 False 1425 TUCP 0.48 2 25274541 25276417

Neighbor

gene id symbol gene type direction distance location
AMCG00020574 NA coding downstream 271465 24972749 ~ 25001128 (-)
AMCG00020575 NA coding downstream 321720 24947221 ~ 24950873 (-)
AMCG00020566 znrf1,LOC106573647 coding downstream 426165 24843010 ~ 24846428 (-)
AMCG00020564 NA coding downstream 451532 24814766 ~ 24821061 (-)
AMCG00020565 NA coding downstream 471810 24791942 ~ 24800783 (-)
AMCG00020592 polr2c coding upstream 41584 25325793 ~ 25329845 (-)
AMCG00020591 LOC102778684,LOC107573013 coding upstream 46864 25331073 ~ 25348318 (-)
AMCG00020594 gabarapl2,LOC107560072 coding upstream 189046 25473255 ~ 25479762 (-)
AMCG00020597 NA coding upstream 267381 25551590 ~ 25552969 (-)
AMCG00020595 chmp1a,LOC106573671 coding upstream 281374 25565583 ~ 25574610 (-)
G64274 NA non-coding downstream 8358 25261926 ~ 25264235 (-)
G64258 NA non-coding downstream 55900 25203124 ~ 25216693 (-)
G64238 NA non-coding downstream 171506 25100037 ~ 25101087 (-)
G64235 NA non-coding downstream 178267 25094031 ~ 25094326 (-)
G64221 NA non-coding downstream 208251 25064136 ~ 25064342 (-)
G64340 NA non-coding upstream 177218 25461427 ~ 25461642 (-)
G64341 NA non-coding upstream 179331 25463540 ~ 25464116 (-)
G64342 NA non-coding upstream 180668 25464877 ~ 25465350 (-)
G64412 NA non-coding upstream 356361 25640570 ~ 25643373 (-)
G64418 NA non-coding upstream 407199 25691408 ~ 25779211 (-)
G64271 NA other downstream 30082 25242169 ~ 25242511 (-)
G64260 NA other downstream 61530 25209059 ~ 25211063 (-)
G64247 NA other downstream 133208 25121098 ~ 25139385 (-)
AMCG00020581 NA other downstream 152997 25111110 ~ 25119596 (-)
AMCG00020560 NA other downstream 496184 24753882 ~ 24776409 (-)
AMCG00020590 LOC108250636 other upstream 5293 25289502 ~ 25302981 (-)
G64298 NA other upstream 45875 25330084 ~ 25330570 (-)
AMCG00020604 NA other upstream 403066 25687275 ~ 25715457 (-)
AMCG00020614 NA other upstream 601841 25886050 ~ 25905598 (-)
G64470 NA other upstream 614219 25898428 ~ 25918630 (-)

Expression


Co-expression Network