AMCG00020590 (LOC108250636)


Basic Information

Item Value
gene id AMCG00020590
gene name LOC108250636
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25289502 ~ 25302981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020590
GCCGCGTCCTGCCTGCATCAGCGGCTGTTCCCCCGGATCCCTCCAGCCGCCGCCTCCGCCGCCCTGCGAAACACGCCATGCAGTAGAAAACACAGCGGATCCGCAAACCACAGCCAGGTGGCTTGTCGTGGGGGGAGAGTGGCCAGGCTGCCGTGATGGTGCTGGACCCTGGCGGGGGCTTGGTGGAGAGAGCGGCAGGAAGGGGTACCCTGTCCGCAGAGCGGCCGGGTACCAGCAAGAGAGAGACGCCACGCAACGGCATGAGGCCCCATCCTTGGTCTGCCTCGGCATCCTTCAGCAATTCCAAAGGGATGGTGGGCTCCCGGGGGGCTGGTGGGGAGGAAGGGAAGGCAGCGGGGGCGGAGGTCAAGCGCCCCATGAGCCTGGAAGTGAAGCAAccgaaggaggagaagaaggggCCAAGCTGGCGGAGTGGCCGTGCGCCGGGGCCCCCCTCCCGCAGCCTCACCAGCCCAGTGTTCACCAGCCATGGCAGCTGGATGCGGCGCAGTGAGAGCACTATTGCCATGAAcggggggctggggggtggcCGGGGGCATATGAGACCAGCCACCTCTCTCCCCCATATCGCCCGTGGGGGGGCCACGCCACTGGCTGCCTCCCCCTCAGGGCCCCGGGGGACCTGCCTGCTCGTGGCCCTACGCCCCATCAACATTGACCGTGAGAGGGATACCTTCTTCAGATCGGATTTCCAGTACGATCCCCAGTTTGAGTACACAGAGCCCCAGCCCACCAGTGTGCTGGAGAAGTACTGCGAAGGTTCGGGACAGTTTCTATCACAGGCCGTGCGGATCATGCAGTGCGTCCTGAGGAAGTACGGCTCCTATGAGAGTTTCGAAGTGGCCACTGGGGGCAGCATCCTTCCCAAGAGCCGTGTCTGGGCATCCGTGCGCAAGTACCTGCAGAAGGAGCGCTGTGTGGGGGAGGTGGTGGTGCGCCTGTCGGAGGAGCTGCTGTCCCAGGCTGTGATGATGGTGGAGAGCTGCCGGCCGACCCTCACCATCAACTTGGCCGGGGCGCGCCAGCACTGGCTGGAGGGCATGCTGCGCCACGAAATTGGGACGCACTACATCCGAGGGGTGAACAATGGCCGCCAGCCCTGGCACAGTGCAGCTGGGCGCAAGCAGTTTGGGCTGAAGCCTGCCAACCCCACGGAGGAGGGCCTGGCCAGCCTGCACAGCGTGCTGTTCCGCAAAAACCCGTTCCTGTGGCGCGCCGCCCTGCTCTACTTCACGGTCTACCACGCCGGACACATGAGCTTCAGCCAGCTCTTCCACAGCATTGGGCAGTTCGTCCAGGACCCCGCTGTACGCTGGGAGTACTGCGTGAGGGCCAAGAGGGGCCAGACCGACACCTCCCGCCCAGGATGCTTCAGTAAGGACCAGGTGTATCTGGACGGCGTGCTGAGGATCCTACGCCATCGGAGGAACATTGACTTCAAAATGCTGGCCTCTCTGGGCAAGGTGTCATATGAGGACGTGGAGCACTTAAGAAAGTTCGCAGTCCTGGAGAGGACCCGCATCCCTCACTTCATGGAAGACCAGGAGCGATACCTCCAGCAGCTGGATCACATCATCACCATCAACGAGCTGGATGACGAGGAGCTGAGACAGCTCATACCATAGAGGAGCCCAGCCCTGCTGCCACTCTGCTACCACCTTGCCACCCTGCAACACGCGCAGCCAATGCCACCTGGCCCTCACTGCTAGGTTTCAAAACGAGAGAATCCAAAATGAAACCAAACGCAGCCTTTGCCAAAGTAATTATGCTGCTCCACTGGGAGATTTCCAATGTCCACCTTGAGTTTTCACCTGCTTTTGAAAACTAAATACGTATTTATCAATgactgtttgtatttatttgtattgtttttaatgacaatgaaaacaagaaTCCAGAAATATGAAATTGAGGATTTGCCTTATTTTGTAGCTGCTTTGATTTGAGAATGCTTACAAGAGCATGGTGgtgtgaaaaacaagaaattgaCAGAGATTGCCCCCATGGTCCAGTATAATTACCTTGGCTACTCttcttgctttattttattttttcattgattttgaatgtaagagaaaacacacacagactcatcCAGATCAGATGAGTCATTGCTGCAGTGTGGCCCTGGCCTCAGTTTAAGGGACTTCATGCCTTAACCCTTTGAGGAAAGTTTctgagggaaagaaaaagcatATCTTCTTAACTTTTGCCAAACCACTGCTTTACAGCTATTAGAGCTCAGCTGATTGGTTCCTCTCAATGCCCTGAAGAATCCATTGAAGTGGCAAGCAGGTAGCTGCAACTGGAAGCATCTTCATCGAGAAACTCCCATTGTGGACTGTGGAAACCATTAAGATTCCTCAGAGAGCTTGTTCTGAGGTGgtccttttttttaaagcccataaacaatacataaaaggTGAAATGTGTACAGCCttgttttaaacagatgttAAGTACCTCAGATGATTTAAGTTGAGctctaatttaaatatatacctCTTGTTGTTTGGTTACAGTAAGCATACTGTGCCTTTTTAGTGTTTAGAGAAtgaccctttttatttttttattttgtaaatgtcatCATTTGGCTTCACAAGCAATATTAtactttgattgttttttgttttttcttgtaagTCAGGGGAAAAGACAAATCTGGCAATTGTAGCATATCGAGATGTACAATTCCGATCAAGGCTTAATTGGCAGGCCAGGTTATAACTGGTTCTGTTGGAGCTCAATCCTCCAGGGTTTGCAGGAAGTTGTTCTGGCCAGGTTGAGAAGTAGATTAGCTTGGGTGGCACAATCACTTGCCATTGCAGTGATTGTCACCTTAGTATGGCGACTGAGTTAGAAATTGCATGTTTTCACTGAGGGGAAAATATTCTAAATGGCTTGACCAGCAGGTAACACTTAGTTGGGGATGGTGTTGCAAAATTATTAGAGATATTATGGATTGATGGATGGACCTCAAATGGAAACTGGAGGAGAACTGGAGGGAAGGCATTTTAATgatagtatttcatttttttccccttcaagggactaaagaaaatgtagtttgtgatagaaagaagaaaagtcTTAAAACCCAGGGGTCTTAAATGGTGTCTTGGGATGCTTGAATTGTGCTCTCTTAACCTATACTTGACAGAACCATGGACAGTGTTTCTAAAACATAAGCCTATCTTGCAGACATATGGGAATGGCATGGATGTCAACTTATTCTAGTGTTTATATGTGGATTAGTAATTATATCAAATggtgcaggaaaaaaaacaacctctaaGAACATCTAAGACAAGATAATGACTGGAAACAATAGCTCTTGTCCTGgagttgctgtttttgttttaggtcaACCTTAAGTCATCTTTGGCCTTGGCCCACTTTGGGCCTTCACATCTTCAATTAAGTACATGGAGAGATCATGTGCATCACAAATATCAGCACTCCTGCAGGCCTCAGTGACCAGAGTGGGCTGCCCtcaaaaatagatttttgcaGTAAGGAGAGATTGGACCACAGAGCAGAGAAGTGCAGCTTATACAAAGGAGTGCATTACACAGAAACTTTTAacaaatactattattatttggagATTTATGCAGCTGTTATTCCTTACTGTGGCGGTAATAGGAGTACATTTCCATTTGTGCACGACTAAGCACATTCTGATATAGGGGTAGCTTCACACAaagactgggagagagagagtgtgaagAAGTGTATAGGACGGGCAGACTTAATACATGTTGACTCTTTAAGAATGGTTTCCCTTCCTCAAAAATATATCGATCGCATTTCATATCAAAGGCTGAGGGTCAGTTGGAGATGGGCAGCAGTTTTTATCACAAGGATAGTTGCTTCCCTGGTGCTCTCAATTGCACTGTTTCACATCACGTAAAGAGAGATTCAGTGCGTTTACTGGCAACCTCGGAGATcaacagtgttttgtttctttgtttttgctttctgtgAAGTTACTCTAGTGCTACTGAGCTGCACATGCATTTTTGCCAGAGTTTGCCTGTGTTGCCTAATCCATATGTAAACGTGTCTGTTTGGAGTAGGACTGTGAAGTTAATTGGAGAGGGTGACGTTAAACTAAGGAGGACCACTTTATCTGGGCACCTGTAAACAAAGAGATACGTTTATGTGGTAGCAGTAGAGAAAATATACAAgctatactctctctctctctctttttttacaCAGGAAATTCACTGTTTTTGCTGGAGTTTATTTCTGGGGACAATTTGGTAACAACAGGGCCCAGTGTAgctctttaattaaaacaaaaaaacttagTAGTATAATTTGCACATCAAACATGCTGAAACAATCAACATATTCCAAAGGACAATAGGCAGACGATTAAATTCtccagtaaaaaataaaactactgtgggggaagaaaaaaaattccTTCAAAATAGGGGTTACTGTGCCTGTCAGGTGTAGAGAAACAGAGATCGTGGGAGGAGTGCCTAGTCTTAAAGACAGGCTCTGTGTGAGCTTGTGAGTAGTATTTaaaatttgtaatgaaaaaaatgatatatacatgtatgtatatcacTGTAACAAAGTGAGTCTGTCGAGACTGAACTGTAGATAACAACACCTTGTATTTTTTTGCACGACtatgtacttttaatttctttgtatttattataaagccACTGTAAACCTGAATTTATGTATGTGCCTTTTATTTGCATGTGCTGGTGTGAGCGTCTGGGCAGAAACAATACTGTCGATCGCTAGAGGACGAGGAATTTCAGACGCATTCTGCTTCACCTCTGACGTCACCTGACGGGAGATTATACCCTATGCAGCTACACGTATAGGGACAATAGAAAAaatgacaatacattttttgggcTGAGAtctgaacaacaaaaaatgtgttcaaatagTGAAAGTGAACATGTTCTCTACAACTCTACTT
>TU80419
GGGTGTCCGGCCGCGTCCTGCCTGCATCAGCGGCTGTTCCCCCGGATCCCTCCAGCCGCCGCCTCCGCCGCCCTGCGAAACACGCCATGCAGTAGAAAACACAGCGGATCCGCAAACCACAGCCAGGTGGCTTGTCGTGGGGGGAGAGTGGCCAGGCTGCCGTGATGGTGCTGGACCCTGGCGGGGGCTTGGTGGAGAGAGCGGCAGGAAGGGGTACCCTGTCCGCAGAGCGGCCGGGTACCAGCAAGAGAGAGACGCCACGCAACGGCATGAGGCCCCATCCTTGGTCTGCCTCGGCATCCTTCAGCAATTCCAAAGGGATGGTGGGCTCCCGGGGGGCTGGTGGGGAGGAAGGGAAGGCAGCGGGGGCGGAGGTCAAGCGCCCCATGAGCCTGGAAGTGAAGCAAccgaaggaggagaagaaggggCCAAGCTGGCGGAGTGGCCGTGCGCCGGGGCCCCCCTCCCGCAGCCTCACCAGCCC

Function

NR:

description
PREDICTED: uncharacterized protein KIAA0895-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020590 True 4981 mRNA 0.47 7 25289502 25302972
TU80419 False 484 TUCP 0.69 2 25298802 25302981

Neighbor

gene id symbol gene type direction distance location
AMCG00020574 NA coding downstream 288374 24972749 ~ 25001128 (-)
AMCG00020575 NA coding downstream 338629 24947221 ~ 24950873 (-)
AMCG00020566 znrf1,LOC106573647 coding downstream 443074 24843010 ~ 24846428 (-)
AMCG00020564 NA coding downstream 468441 24814766 ~ 24821061 (-)
AMCG00020565 NA coding downstream 488719 24791942 ~ 24800783 (-)
AMCG00020592 polr2c coding upstream 22812 25325793 ~ 25329845 (-)
AMCG00020591 LOC102778684,LOC107573013 coding upstream 28092 25331073 ~ 25348318 (-)
AMCG00020594 gabarapl2,LOC107560072 coding upstream 170274 25473255 ~ 25479762 (-)
AMCG00020597 NA coding upstream 248609 25551590 ~ 25552969 (-)
AMCG00020595 chmp1a,LOC106573671 coding upstream 262602 25565583 ~ 25574610 (-)
G64274 NA non-coding downstream 25267 25261926 ~ 25264235 (-)
G64258 NA non-coding downstream 72809 25203124 ~ 25216693 (-)
G64238 NA non-coding downstream 188415 25100037 ~ 25101087 (-)
G64235 NA non-coding downstream 195176 25094031 ~ 25094326 (-)
G64221 NA non-coding downstream 225160 25064136 ~ 25064342 (-)
G64340 NA non-coding upstream 158446 25461427 ~ 25461642 (-)
G64341 NA non-coding upstream 160559 25463540 ~ 25464116 (-)
G64342 NA non-coding upstream 161896 25464877 ~ 25465350 (-)
G64412 NA non-coding upstream 337589 25640570 ~ 25643373 (-)
G64418 NA non-coding upstream 388427 25691408 ~ 25779211 (-)
AMCG00020589 NA other downstream 5293 25272593 ~ 25284209 (-)
G64271 NA other downstream 46991 25242169 ~ 25242511 (-)
G64260 NA other downstream 78439 25209059 ~ 25211063 (-)
G64247 NA other downstream 150117 25121098 ~ 25139385 (-)
AMCG00020581 NA other downstream 169906 25111110 ~ 25119596 (-)
G64298 NA other upstream 27103 25330084 ~ 25330570 (-)
AMCG00020604 NA other upstream 384294 25687275 ~ 25715457 (-)
AMCG00020614 NA other upstream 583069 25886050 ~ 25905598 (-)
G64470 NA other upstream 595447 25898428 ~ 25918630 (-)
AMCG00020613 NA other upstream 631920 25934901 ~ 25948343 (-)

Expression


Co-expression Network