AMCG00020601


Basic Information

Item Value
gene id AMCG00020601
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25590014 ~ 25595268 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020601
CACGCACGGAAACGGCTTGTATTGAGACGCGCTGTGCCGTCACTGTCCGCCTAGCGCAGCCGAAAATTAGTTACACTTACAGGAGGAAGTTCGTGTCAAAGGTTCAACACCgtacactaaaataaattacttatcTTCATATCATAAACCGGATTTGTACCGTTTATTTTGCCTGGGGAAAACGAAACCCAGTTTTGAGCTGAAGCGTTCAAACGACTAGTTTCGATTCCGCGCTGCTGTCTGAAAGTTTGTCAGTTAACACATCAGAAAGCACAAGGACTAAAGGATGAGCAAGCGAGGAAAGAGGGACTTATGTGAGGAGTACCGTGTGGCCGTGCAGCGCAGGGTGGAGGAGGGCCTGTCTGAGCTGGTGTGTCAGGATGCCTCCTTGATCGACACCACCCAGAAACTGCTGCTACAGGGGGAGGGCCAGGAGCTCCACAGCTACCTGAAGAACGATGCCTTCCAGCTGATCAGCACCACCCTCCTGAGCGCACCCAGTCTGCATCTCGGCCTGAACAGACTCCGCAAGGCCTTCGAGGTGCTGGAGCTGGCCACCCTCAACCTCTACTTGTGCCCCTGGAGGCAGGAGTTCAAGATCATTAAGACTTTCTCAGGAGTTTACACCCACTACCTGAAGCCCACCTTCTCAGTGGACTCCCTGCTGCAGTTGTTCCAGAAGATGGGCTACAGGGAGCGGGACAGGCACCAGCTGGAGTTGGCCTCCATGCCGCCCCCTGACACTCTGCTCCGGGTGGCCTGTGGCTTCTTTGTAGCCCGTTGTGAGTGTGACCTCCTGCAGGGCATGGCCAAGAAACTGATTGGGGTGAAAGTGAGTGCTGACGACCTGATCCAGGAGAGACGGAAGTCCAGGAGCCTGGATGAGGCCGTGAGTAACCTTAAGCACAGGATGGCCTCCTCGAGAAAAGCCGAACACAGTGACTGGAGCACTGGAGGCAAACTAGGACCTGACACTGAGATAGATCTCTACACTGCTGAGGGGATGCTCCTGAATGGAGAGGACCACCAACACGGGATTGCTAGCCAGATCTCCACTTCATCCCTTACACCAAGGAAAGAACGGGAGTCACTGCAAAGTCAGGGTGAACACAGCACAACAGCCAGGTCTACAGGAGGCAATCACTCCCTCAAAGTGAAATCCTCTCCTGGAAACGCACACGCTGCCGATCATTACCTGAGCACTGTGACCTGGCAGCTGCAGAACACTTCTCTAACTAACGCAGAAGCAAGCCCTCCCTCCAGCAGGGGGGACCGTCACAGTGACGGCAAGGGAAATGACACAATTGAAGTCtgcaaatgtgtgaaaaaaagaAGTGCCTATCTTTATAAATGCCTCAAGTGCCAGAGGATTCATTGCCGTGATTGCAACATTTTAGAGCAGTGTGATGGAAGTAAACATGCAATTAATTTGACGGACGTGGAAGACGAGAGACTGATCAGCGCAGTACTGGAGGAATTAGGTTCTGTTAAAAGGTCCAGTCTGATTTCCACCGAGTCCTGTCCTAAGACAGAAAAGGGTGTTGAGAAGAGTTTGCTGCCAGGCTATGGTAATTCTGTAGAACAGGCTCCGGAGTGGGTAAAGCACAGCTGTATAACTGATGGTCGTCAGCCTCACTTGGCATGCATAACATGTTGCCTCTACCATGACCACCTCTGTGAAGAAGGGAAAGCCTGCCTTCAGAGGCACCAAACAACTTTTCTTGAATCTGATCATACTAAGAGGAAGGAATTGACTAGGAAAGAGCCGCAGTACCGCAGGCACTCATGTAATTCAGATAGAGAGCTCCCTAGCTTGGCATGCACATCTTGCTTTGAGTTCCACAGTTTCCTATGTCTCAAGGCAGAAGGCTGTTTAAAGATGCACGATGTGAAATCCATTGACAAGTGTTCAGCCACTGCTGGGTGCACAAGTTCAGGATATTACGTATGCATGAACTGTTGCACTGTGCATTGCAAAAATTGTTGGTTTAAAAGGCCCATGGAATGCACTTGCGGCTACCAGTGTACACATGAATCCTCTGAGGTTTAAAATGCCTCTTTCAGGTATAGAAAGGAAAAGGGATTTCCTCATATACTCTGCTTTGGcttaaataatataatcaacAAGTCTAATATTTGCACTGAAGTCTCCTGAACTGGAATAAAAGCCGGCCTCTTAAATGTGTGCAGAAGTGTCACTATTAACAGACCTCAAATTATAACTTTGGGTTCCTGAGtaacacatttattacaataaaagcAATGGGTCACTCAAAGTATAGCAATCACATTTGATACTCCTTATTTAATATATGCTACAGATGTGTGGATGcctggaaaagaaaatattagTTTCTCATACAAAATATGGCCTAATTAGTCCTCCCTTACAGGTTTCTGTAGGAAATGTAAATCCTTCTAAAACTATTCAAGGTCACATTATTGGCCAATTGTAGAATTTTAGGTACcagttttctgctttttctttttttcctacAATTCAGGGGAAATGTTCTTGACTTCAGATATTCTTTgcttacttaaaaacaaattctagTTATGAAAGGTAGGTAGGAAgatgaaacatttatataatactCATGCCTTTAAGATGTTTTAGTTCTGGGATGCCACTGAAACAAGTTTAAGACATCAGGGTGTATGGTCTTCCAAAATAATTGAAGTCTGATTTGAACACTCTTGGGACAATTAAAGGAGCACTTAGAACACACCATGAAGAGACTGAGGGAAGGGGATAGTCATGTGAAAAaggtataatatataaaatgcatacaaatcagATAAACCTCACTGCCTTAACACACAGCATTGCACAAACTACTATTGTAATTCAGTCAGTTAGTCTGATACTGAAAAGGGGTGCCATTTCAACACTGTCTTCCTGGAAACAGGATTGCACTGATTTGGATTTTAAATATGCTTGAAAAGGGTACTAATAAAGTCCAAGAAATATCTAACACAGAAAAGATTGATTGTCATTTTGTTATCTATCTCCTGTCTTTTTCGCACTAGTAACTAGGTCTTATGAAATGCAGCTGCTTTGTCCATGGCTGCTGGATATTAAATTCTTGAAATTAATGTACCACACGCTGCACTTTATTAACC

Function

GO: NA

KEGG:

id description
K17595 SPATA2; spermatogenesis-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020601 True 3126 mRNA 0.45 3 25590014 25595268

Neighbor

gene id symbol gene type direction distance location
AMCG00020595 chmp1a,LOC106573671 coding downstream 15404 25565583 ~ 25574610 (-)
AMCG00020597 NA coding downstream 37045 25551590 ~ 25552969 (-)
AMCG00020594 gabarapl2,LOC107560072 coding downstream 110252 25473255 ~ 25479762 (-)
AMCG00020591 LOC102778684,LOC107573013 coding downstream 241696 25331073 ~ 25348318 (-)
AMCG00020592 polr2c coding downstream 260169 25325793 ~ 25329845 (-)
AMCG00020602 NA coding upstream 48479 25643747 ~ 25681156 (-)
AMCG00020605 NA coding upstream 133711 25728979 ~ 25737475 (-)
AMCG00020612 NA coding upstream 266487 25861755 ~ 25867205 (-)
AMCG00020615 NA coding upstream 315294 25910562 ~ 25917773 (-)
AMCG00020620 NA coding upstream 365110 25960378 ~ 25965307 (-)
G64342 NA non-coding downstream 124664 25464877 ~ 25465350 (-)
G64341 NA non-coding downstream 125898 25463540 ~ 25464116 (-)
G64340 NA non-coding downstream 128372 25461427 ~ 25461642 (-)
G64274 NA non-coding downstream 325779 25261926 ~ 25264235 (-)
G64258 NA non-coding downstream 373321 25203124 ~ 25216693 (-)
G64412 NA non-coding upstream 45302 25640570 ~ 25643373 (-)
G64418 NA non-coding upstream 96140 25691408 ~ 25779211 (-)
G64477 NA non-coding upstream 336431 25931699 ~ 25932142 (-)
G64510 NA non-coding upstream 390180 25985448 ~ 25989689 (-)
G64562 NA non-coding upstream 596293 26191561 ~ 26192678 (-)
G64298 NA other downstream 259444 25330084 ~ 25330570 (-)
AMCG00020590 LOC108250636 other downstream 287033 25289502 ~ 25302981 (-)
AMCG00020589 NA other downstream 305805 25272593 ~ 25284209 (-)
G64271 NA other downstream 347503 25242169 ~ 25242511 (-)
G64260 NA other downstream 378951 25209059 ~ 25211063 (-)
AMCG00020604 NA other upstream 92007 25687275 ~ 25715457 (-)
AMCG00020614 NA other upstream 290782 25886050 ~ 25905598 (-)
G64470 NA other upstream 303160 25898428 ~ 25918630 (-)
AMCG00020613 NA other upstream 339633 25934901 ~ 25948343 (-)
AMCG00020639 LOC107583916 other upstream 1650746 27246014 ~ 27249676 (-)

Expression


Co-expression Network