AMCG00020612


Basic Information

Item Value
gene id AMCG00020612
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25861755 ~ 25867205 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020612
GTTTGGCACTtttgctgtagtgtgctgtaacCGAAGGCTCTCTTCTGTTCCCAAACGCCGCTGCTTGTTAGTCCTGTTTCTAAGTAGCACTTGCCGTATTACGCGCTTCGTCGCAAAGCTGGTTGTTGCTTTACGTGAACTGTCGCAGGCGCATGTCTAAGATGGCGCTGCACATTTGAGCATTTGGCCATGAGCGGACAGTCACGGGCAGTGCCAGCAGACTGAAAACTTGCGATTTTTATACTCtttgCTGAGCTCCGTCCTACACGTAAATGACATCAAAGACTGCATCAAGGTTATTGTGCCTTGCTCAGTGGAGTTTGGCCCCCAAAAGACACTTTCCTGTCTCTCAGGTCTGCATGCCCATCGCAACAGCATGCAGCGCCAGCAGTGCCCAGGTCCGGCCGCACTCTTCTGAGGTCAAGCACAGGACATACTGGCAATACCTGAAGCGGAAGGTGATCAAGCCCTCCTCCCCCCCGTATAAACATGTCTGCCAGGTGGGTGACCCCATCCTTCGCTCCAAAGCGTCCCAGGTGGACCCCACTCAGATCAACAGCCCGGAGATCCAGAAGGTGATCCGTACACTGGTGAAAGTGATGCGGAAGCTGGACTGCGTGGGGCTCAGTGCCCCTCAGGTGGGCGTTCCCCTGCAGATCCTGGTGGCGGAGTACAGCGAGCGCATGCTGTATGAGAACAGGCCGAGCGAGAGGGAAGCCAAGGGCCTGCAGCCTTTTCCCCTGAAGGTGTTCGTGAACCCCAGCCTGAGGGTGCTGGACTCCAGGACCGCCTCCTTCCCCGAGGCCTGTGAGAGCATCTCTGGCTTCTGTGCTTGTGTTCCTAGATACCACTCAGTGGAGATTGCAGGGCTGAACGAGAGAGGGGAGCCCGTCACCTGGGAGGCCAGTGGGTGGCCGGCCCGCATCATCCAGCACGAAATGGACCATCTGAGCGGAGTGCTGTACATTGACAAGATGGACAGCAAAACCTTCATTAACTTTGTCTGGATGGAAGAAAATGAGTAAACCAACACCGACATTTTGGGGGGTTTATAAAACTCAAGTCTTTTGTTTGATGCCAAAGGAATCATTTCAACAATGGCATTTCTTGGGCAAACTGAACATTTGCACAATGTAGAAAAGCAAACTTCAGTTCTACCAGTCATTTCCCCTAGATATACAGTGAATCTCTCCTATCTCCACGAAAAGTGTAGTCACCATGGGGAGGATatgtacaatattgtttttgtgagTTTGGCATTGTCTGTGTGCTCATCTTACACAAGTCAAGTcctttgaaaaaacatttcaaattgtaatatcaatacattgattttaaagtTATGTAAAAGAGGATTATTCAATGATACAAATCTGTGCAATCTAACTGAAAAGGAAAATCTCTTCCCCCACTATGATCATCCACTGTTCTAAGTGTgagtttaataaaacattttatgtgCTGATGTAACTGACTTGCTTACTTTATTTGTAAAGGTCACTTTTcaaagattaaattattttcattcttgTCACATAAATACACTGAgtttgtagttatttatttagatgcATATGATGATCTGTGAATGTACTCTAAATCTGGTGACCCATAAGGATGATATATTGcagaacatattttatatgtataaagcTTTTAAATGTTGTACATCCAGGTTAACATAAAATGGAAGGTGACATGCAATCAAATCCTTCAGTTACAAAActtcaaatggaaaattaaaataaaccacacagtTGCATTGACCAATGTcaattttctgtgttttgagaCTAGTGCTATTCTATGACAATGTGAAATGATTATAATcgataaaatatttgtattgacatGCTCTGTAATGTACAGCAGTATGGAGTGCAATACAAGTGATGAATATTGTCAAATAAATGAACTGTCACagctttataatatattgaGTTTAATAGCATCAAATAACTTTAATCAAGTCATCAACAGTTCTAGCAGAGTGACACTGTATTTCAGTGGATAACAGACTGATGGAAGTAGCAGTGTTAGATGCATTGTATGGTTATATTTGAAGTACAGAGATCTCAACaagaactttaaaaaacaaaaataaaattaatttcatcACATAAATCACTAAGatccagaaacaaaaaacaaattaaatatagctCCTTTACTACTGATTCATAattgtttcatatttcattCAAACTATTTTCCACTGGTTGGGTGTACTTTATCAATCCTAACATGCAGGTTATCCCACAAATTATACTATGTATGAAGCTGTACAGGTATACATTGTAAGTTTGATGGTACATGtaaggaaatttaaaaaataaataaataaataaatgatactaCTGTTGAAATGTAAGTACCTTTTGCAATCACAGTTTCAATATCTGGAATTGGACCTACATGGTAAATCAGTATTTTCCTTACTTTTTCTGCTACATATTAAAGTGCCTTGCTTCAGAATAAATAAGCTGCATTTTTCCTTTGTCCTGCACTTGAAAACCCACCAAGAACATTGTCAatcttaacaaaaacaaacaaaaaaacatgtgtgGAGCTCCATGGATGAAACTAGTGTTACAATGCAGCTGCTCAGTTTCAGCATGCTGACTCAACTGTAGAAACCGCAAGTTGCATTCTGGCAGAGAATGAGACTCGGCTTGACCGGACCATTCACTGCACCGGTTTGGCCTCCAGATTGGGTCCACAAGGTTCAAAATGAAAGCAAGCTTTGCTCAGATACAAAGGCAATCAGAATGACAAGGTGGTAAATGTTGGGGTGACTGGAGTTAAAAGCTGCCTGGAAGACAGTTTGGAGAGCGGCCTTCTACAGTCGAAGTCTATACATCTGTACCCTCAATCAGCAAAACGGATACTTCTCCAAGAATCAAACAGCAAGACACCAAACTGACCTTGTGAAGGAGACAGAATTACAAACCTGGAGTGGTGGCGTCTCACTGGGGATCACCACTGTGTGactgaaaacatttgaataaacagAGCGAGAATGTTGACAAAAATGTTACAGGGACAACCTGTACTTGCAAGCAGACAGTTAAAGAACTCCATTCATCGTATTGATCTTAAACTCGATACTTTGAGTTTTCTATGTTTTGTagcatgaattaataaatacacaaataaataaatttactCAACCTCTGCTCAGATATTGCATTCAATTTGCAGAATTCAATCAATATCTTTTAGTTGGTCAGAAACTTTGAAATGGTGTAGACCATCTAATAATGCACTGTGCATTAACACATACAGTACCACATACTGTACATTCAGAGTGCAGCATCAACCACAAAACCTGTCATTCTGCTGTCAACTGATGAACCCTGGGGGTCTCCAGTGCCTGGAGAATGAATACATAGGCAAAGGAACAATTCAATAACATCTTggggaaaatgaataaataagcatCTAATTTCCAgctatgtaaaaataaacactatacaTTAACAAGGGGTGGGGGGAATCACATTAAGTCTAAAATACTTATGACCAGAATTGACAAAATGAAATGGACTTCTCTTTGGAAAGTAGAGAACCCCTTACATCTGATCTTAAAGGTTGGAAGAACAATAGAATACATTAAAGCTCCTTGGTGACACCTATATCTGAAATACACACATCTGCCATGACTGCCGGATCGCCCTCCTGGTCTGCCTACTGTGAAAATACAGCAACTCGAAAAAAGCCTGAAACTGAACATGTTTGATGacctattatatatatatatat

Function

GO:

id name namespace
GO:0018206 peptidyl-methionine modification biological_process
GO:0031365 N-terminal protein amino acid modification biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0042586 peptide deformylase activity molecular_function

KEGG:

id description
K01462 PDF, def; peptide deformylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020612 True 3762 mRNA 0.41 3 25861755 25867205

Neighbor

gene id symbol gene type direction distance location
AMCG00020605 NA coding downstream 124280 25728979 ~ 25737475 (-)
AMCG00020602 NA coding downstream 180599 25643747 ~ 25681156 (-)
AMCG00020601 NA coding downstream 266487 25590014 ~ 25595268 (-)
AMCG00020595 chmp1a,LOC106573671 coding downstream 287145 25565583 ~ 25574610 (-)
AMCG00020597 NA coding downstream 308786 25551590 ~ 25552969 (-)
AMCG00020615 NA coding upstream 43357 25910562 ~ 25917773 (-)
AMCG00020620 NA coding upstream 93173 25960378 ~ 25965307 (-)
AMCG00020618 NA coding upstream 98935 25966140 ~ 25971800 (-)
AMCG00020619 NA coding upstream 154537 26021742 ~ 26053728 (-)
AMCG00020622 cmip coding upstream 241814 26109019 ~ 26129019 (-)
G64418 NA non-coding downstream 82544 25691408 ~ 25779211 (-)
G64412 NA non-coding downstream 218382 25640570 ~ 25643373 (-)
G64342 NA non-coding downstream 396405 25464877 ~ 25465350 (-)
G64341 NA non-coding downstream 397639 25463540 ~ 25464116 (-)
G64340 NA non-coding downstream 400113 25461427 ~ 25461642 (-)
G64477 NA non-coding upstream 64494 25931699 ~ 25932142 (-)
G64510 NA non-coding upstream 118243 25985448 ~ 25989689 (-)
G64562 NA non-coding upstream 324356 26191561 ~ 26192678 (-)
G64608 NA non-coding upstream 559945 26427150 ~ 26428274 (-)
G64625 NA non-coding upstream 704297 26571502 ~ 26571716 (-)
AMCG00020604 NA other downstream 146298 25687275 ~ 25715457 (-)
G64298 NA other downstream 531185 25330084 ~ 25330570 (-)
AMCG00020590 LOC108250636 other downstream 558774 25289502 ~ 25302981 (-)
AMCG00020589 NA other downstream 577546 25272593 ~ 25284209 (-)
G64271 NA other downstream 619244 25242169 ~ 25242511 (-)
AMCG00020614 NA other upstream 18845 25886050 ~ 25905598 (-)
G64470 NA other upstream 31223 25898428 ~ 25918630 (-)
AMCG00020613 NA other upstream 67696 25934901 ~ 25948343 (-)
AMCG00020639 LOC107583916 other upstream 1378809 27246014 ~ 27249676 (-)
AMCG00020657 NA other upstream 2294397 28161602 ~ 28239074 (-)

Expression


Co-expression Network