AMCG00020639 (LOC107583916)


Basic Information

Item Value
gene id AMCG00020639
gene name LOC107583916
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27246014 ~ 27249676 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020639
ATGGTTCAGATCCTCATCACAAGGCCTGTCCTTGTGCTGTGTGACAGTCCTGGCAGCCCTGCCGAGTGGATGCTGATGGAGCTGCAGGGAGAGGTTGTGTCTCGTCAGAATATCGGACTGGCTGGAGGTCAAATGGGAGACCTGCATTACACTAAAGAGGGGATTCCTGTGCTCCTAATCGGACACCACATATTGTACGGGAAGGTGGTGAAACTGGAGAAACCCTTTGCCGTTCTTGTGAAACACTCGGGCCTTCCAGAAGGGACTGAGGACGATATGGAGACGGGAGAGGAGAAGCCCACGTCATACCAGGTGTCGGCGCTCATCAAGAGAAAAATCATCTTCAAAACGCGGCCGAAGCCAATCATCACCAACGTGCCAAAGAAAGTGTAG
>TU80934
TGAGCAATTTTCCTTTGCActacttctttattttctcagttttcGGACTTCCATAGCCCCGCAGTCCACAAACACGCCAGCCCGGGCCACACAGGAGCACCACGTTGGAGACCTCCGACCCGGATGTGGAAACGCTTGCGCCGGAAACACGTGATCCGAGAGCGCTGGCGGGAACTTTGATCAGCTGGCAGAGACGAGCGCGGCTGCGACGGAGAGGAAGGGGGTCGTGTAAGACTGGTCAGAAGCTGTGGAGATGGTTCAGATCCTCATCACAAGTCCTGGCAGCCCTGCCGAGTGGATGCTGATGGAGCTGCAGGGAGAGGTTGTGTCTCGTCAGAATATCGGACTGGCTGGAGGTCAAATGGGAGACCTGCATTACACTAAAGAGGGGATTCCTGTGCTCCTAATCGGACACCACATATTGTACGGGAAGGTGGTGAAACTGGAGAAACCCTTTGCCGTTCTTGTGAAACACTCGGGCCTTCCAGAAGGGACTGAGGACGATATGGAGACGGGAGAGGAGAAGCCCACGTCATACCAGGTGTCGGCGCTCATCAAGAGAAAAATCATCTTCAAAACGCGGCCGAAGCCAATCATCACCAACGTGCCAAAGAAAGTGTAGCCCGCCTGGCCTGCACAGCGTGGATTGGGCTTTCCTGTAGCCTGGGCCTTTGTGTCCTGAAGTTTTGCCTCTGGTTCACAAGGATGCGTTTCTCCAGTTGATCTCCTTTTGAAAAGCAGTTTTTGATCAACTGAAAACTTGAGGCGTCTCATACATGGTCAGTCCCAGCCACGAGGGCCCTGCAGGCTTTGCTGTGTTTTACCTTCATATTGCATTAGGTCCCACAGACTTTGAAATAGGCGTTTACACTCATTCATTGTTGAAAATTGTTCTGTTAATTTACctgaatatataataatttaaatttcctAAAGTCTTAATTAAACCAACACCAGAAGTGGGAAAGGAAGTCCAAGTTAATTCCCTCTATTCATGGACCAGagtacattgttatttttattgcaggATAAACCATTTGTATGGATTACAGCCTTGTGAtcagtattttagttttattggcATTTCAGGACGATGATGAACTGCCATTCCCGAGGCTGTGACAAGGGGGTGGTAATGTACGGCACATTCATATCTTAGCTGCTGACGCTGTTAACACAGCTGACCTGGCAGTGCACTGGCTGCTGGCGTCTGGCTGATACTGTAGAGAGGGAGACGGGACACACAGGGGAAGAAGGTAGAATTTCCTTTATGTTCAAGATTTTGACAGTAACTGGCCAAATAAACACGGATTAATGGGACAGACAGGGTGTGCAGACAAGATTCATTGTCGTGGCCAAAGtttccaacaaaacaaaccgttgaggcaattcaaaataaatgtgttcatttgtgCCTTAACTTTGGAATTTGGGTTTTGTGACAAATTCAGTCTTCAATCCCAATTGAATTATGCATGACtgatattgaaatacaaagttAATTTGGTTTTATGGCCAACAGTTGGAGAAATCGTCATACAGAGACATACTACGACGCAATAAGAAAACCGTGACGGATTCAAGTTCAgagttttattgaaaaacattttgcacgACTGTTCAGAAAGGCTGTTAAAAGgtctccaaaaataaatacataatttgaaataatatacatgtaaaactTTTAGAAAGCCCTTTGCATATCTACACACAACCATacttgtatatatgtgtatttgtgtgtgtgtgtgtaatatatatatatatatatatatatacacacacacacacacgcacaaacacaaatgtatataaatgttaatatattaacattccCAACAATACAAAGATAcatatttatcttaaaatacacctacattTACTTATGTCAGTTAACTTATTTTGATGCATCTCGatcattaaatacacaaatacttttaaaatatttgaatagaaaaatatatttatttacaactttttcttttcacattgtCCCTTATGTAAACCTATAACTTGTGCATCTGTGCTGGGGATTTTTGAAGGTTGTTTATCAACTAAAGTGTGTTTTGCCTGTATATAACTAAGCACCATAGCCAGTCTTGCCATTGGCATCCTGTTATTTTTGTGTACAAAAGTATTACTAAAGAGCATCTTTACTGAAGATAAAGCTAGTGACAAGAAAATGTATCAGTCACTACCTTTACGACAGCCCAGATTCACAGTTAAAAGGTTTGTAGTATAGTCTCACAAAAAAAgagcagaaatgtaattaacatacCTTTGTCCAGAAATACATCTGAACCATTGCTTGTAGTTATTTAGTTGCTTTCTCTCATTCCTCATATAACCCTAACGGAAGGTACATTCTAGATTGACTATTCACTAATTCCTCTGCTATTCACTatattattgtgtaaatattgccattgtgtatttgtaagtatttttaatattaaactgaTTTTCAAAGACCAAAGTAGTCAATCATGTCCATGTTTTCAGGG

Function

NR:

description
PREDICTED: chromosome transmission fidelity protein 8 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020639 False 393 mRNA 0.53 3 27247899 27248945
TU80934 True 2507 TUCP 0.41 4 27246014 27249676

Neighbor

gene id symbol gene type direction distance location
AMCG00020635 NA coding downstream 137734 27102401 ~ 27108280 (-)
AMCG00020627 NA coding downstream 803561 26415975 ~ 26442453 (-)
AMCG00020628 NA coding downstream 852963 26372786 ~ 26393051 (-)
AMCG00020625 NA coding downstream 1029201 26199871 ~ 26216813 (-)
AMCG00020623 cmip,LOC106573687,LOC106560887 coding downstream 1066679 26178949 ~ 26179335 (-)
AMCG00020647 NA coding upstream 10176 27259852 ~ 27269443 (-)
AMCG00020644 NA coding upstream 31939 27281615 ~ 27286072 (-)
AMCG00020643 si:dkey-246g23.2,LOC107684666,LOC107749300,LOC107553994,LOC107670153,LOC107738383 coding upstream 157279 27406955 ~ 27408112 (-)
AMCG00020645 zgc:173742,LOC107684664,LOC107749320,LOC107553995,LOC108415671 coding upstream 171372 27421048 ~ 27425477 (-)
AMCG00020646 zgc:173742,LOC108415671,LOC107553995,LOC107684664,LOC107749320,LOC108264272 coding upstream 185993 27435669 ~ 27474732 (-)
G64708 NA non-coding downstream 9692 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 500191 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 513726 26731435 ~ 26732288 (-)
G64629 NA non-coding downstream 515903 26729855 ~ 26730111 (-)
G64627 NA non-coding downstream 610226 26635588 ~ 26635788 (-)
G64745 NA non-coding upstream 170690 27420366 ~ 27420646 (-)
G64847 NA non-coding upstream 1067093 28316769 ~ 28323164 (-)
G64886 NA non-coding upstream 1608313 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 1746716 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 2009881 29259557 ~ 29314059 (-)
AMCG00020613 NA other downstream 1297671 25934901 ~ 25948343 (-)
G64470 NA other downstream 1327384 25898428 ~ 25918630 (-)
AMCG00020614 NA other downstream 1340416 25886050 ~ 25905598 (-)
AMCG00020604 NA other downstream 1530557 25687275 ~ 25715457 (-)
G64298 NA other downstream 1915444 25330084 ~ 25330570 (-)
AMCG00020657 NA other upstream 911926 28161602 ~ 28239074 (-)
G64811 NA other upstream 976859 28226535 ~ 28229647 (-)
AMCG00020661 ss18l2 other upstream 1075361 28325037 ~ 28328312 (-)
G64882 NA other upstream 1538904 28788580 ~ 28796956 (-)
G65000 NA other upstream 2131639 29381315 ~ 29405636 (-)

Expression


Co-expression Network