AMCG00020657


Basic Information

Item Value
gene id AMCG00020657
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28161602 ~ 28239074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020657
cactgcTACAtagatttattaattaatacaaagtacaaataaaacaccttttcGAAGACACGCTAACTATTATGTAGCTATTCAATGATTTTGTGTTACTTATTTGGTCAGAAAATCGTTGGAACAAGCAGTACTTTTCAAAGAACAGAAAACTAATGAAATACTCTAAATGACTTATGGTACATTATGAAGTTTTCAGGAATTTCAGAAAAAGCCTTGAAATAAAAGTTTCCAAATGTGTCCTTTTCCACTGAATCAGTTGTACTTAATctcaagatgtttttttccccctaagtCTACACACAgatttcaggaaaacaaaatattctgGCTTCTAACATGTCCTgatttgcctttttaaaaagacTGAAATATGTTACCCCTTTTATGTTCTTTAATTTGTATCAACATTGTACAGAGTACCGCTTGGAGTAATGATCAAAGCCGTAGCACAGAGTATGGATTACCTGCTGCTGCAGTTAAGATAATTCgaggtttttaattaattatgcttaagaaataattaattactctAGTCCTAGTGATGTGTCAGattgcacaaaaaacaaatcatggtagattttgtttttaaaaaactttaaaactcgttgtttatatttaacactacagtattttagtatttttaggattttttttggTTATGCAGTGCAATTATATTTGGCTGTATTCTGCAAAACTAGTTTAAtgtttactaaaaataaatgatcaattgTCAAACATATCATAAACAATACCTTTCTGCTATGACAATTTCTTCCTGTCTTGAGCACAGTAGCATTTCAATTTCTAAAGACCATTATTTCCACATTACAGACTGGCTTCACAATCCATTTACCGACCAGTTGTTTGGTTTCACAAAGCAGATTAGCTGCTTTTGGAAATCTAATAACAAGGAAACACTCTTTTAAGACATTAAGCTGCTGTTTCAGACACAGTGCTACGATCATGAGAAGACTGTACCACCAAAAAAGGGTTTTTATAATGCTTAAATTAGAGTTTAGAAGTGTTCCTGAGAAATATGTCTTCCCTTGCTTTCTTCAGCTGTTTATGTAACCTAaccttcatgttttatttttaattccaacGTTTGAGATATAGGTAGAATCTGAACACTTTAAATATGATAACtcgcacatacatacatacgtttGTGCAAAGGTGGACCCGATAAGAGAGGGCTGCTCGAGAACAGtgaactacaggcactttttcAGAACTGAACAATTTGCtttcagatttaaaacattaatgtattatttccttgatctAATATAAGGGCAATGAGAATACAAACTTTCTCCCGAGGATGCAAGGATCTTGAAACTGTAATTTATAAAGAAatgagtttttaattaaaaaaataatacaattcttcGCTGGTTAATGTGGTTACGTGCCCACAACTGGAAGAAACGAGAAGATCACAGCAACAAATGCAATTACGAGCAGAATATCCTGCAGCAGATGCTTAAATGAGGAAGATTTAGGCTTCCTCCCATGGCCcctttttttaaaccactgaaCTACTTCATCCAAGCTGTACTTTTGGGGTTCATAGCCCAGGTTTCTCTTTGCCTTGGCCATGCTGAAGTAATGTGTGACCCCTGTCTTGTAGACCTCTGTGCGAGTAAGCAGAGGCTGGAAGTTATAGAGGCGGCCAACAAGGGAATGAACCATTTCGGTGAGGAAGGCGAAGAGGTAGATGAGGGTGAGGGGCAGGCGCACTTTGGGGAAAGGGTGGCCCAAGCCTTCCACCAGAGGGCGGAAAAACTCAAAGTTGTTGATGGGTTGTCCATCGGAGATAAAGTAGGCTTGGCCGGATGCTCGGTACCCTTTGTTCGCAGTCAGGGCCTCAGCAGCCAGCACGTGCGCTGCAGCCAGGTTGTCCACGTGGACGAACTCCACCAGGCTGCTGGCTTCTCCATACACGAAGCAGAAGAGGCCCCTTTCGATGTACCCGACAATCCTTGGAAGGTGCCTCTGCTCGCCGGGTCCGTAGATGCCTGCCGGACGCAGGGCCGAGGTTCTCAGAACGCCCACGCCGTTTTCCAAGGCTGTACCGTTGGCCTCCATCACGGCCATCTCAGCCAGGGCCTTGGTCTTGGAGTAGTGATCAGGGTGGAGGTGGAGCGGCAAGTAGGGAAGAGTCTCGTCTCCGTTTTCAATTACTTGGCCACCGAAGACCACGTTGAAGGTGCTGGTGTAGATGAGCCGGGGCACTGCGCTGGCCACACAGGCCCGGATCACGTGCTCTGTCCCGCGCACGTTCACCTCTTCGATCAGGGTCTGGTTCAGCTGCTCTCGGCCTGACATGCCGTATGAAGCGATGTGGAAGACGCAGTCGATTCCTCGTGTTGCACTCTCCACCTCGGCGTATTCCCTGATATCTCCGTGCACGAACACCATCCCTTCTGGAATTTCCTGGCTAGGTGGACGGACGTCAAAGAGCACAACCTTGGCCCCCTTCTCATGCAGAGCACATGCAAGGCGGTAGCCAAAATAGCCTCCGCCGCCAGTAATGAGGAAAGTATCTTTCAATTCCTTACGGTCTACTTGATCCATATCTCTCTCGTTAGGTGTTAAAGGAATCGCTTCCTGTATGCAGGAGGAGCTTCCCCGGTCTTCTGCTTGCCTTCTTGCTGCGCAAATTTACGCAGTTGTTCGCacatctgcgctgctccaccaatgggatcggtggaattctgcaacactgcggaaatctgcgctgcaCGTACATAAACCAGGCGGCGCTGCACGGCTGTGCGCACTCTGAGTGACGTCCTACGTTTTACGCTTTCATTTGCACAACAGAGATGGCGGGGAAACTCAAAGCTGAAGAAATGAAAGATATAATACAGCGGTTAAATACTATCAACCATTCCTTAGAGTCCGCTGTGGCATCACTGGCGCAGAGCAAGAAGGAGCTGGGAAAGGCAGCCGAGAGCCAGACATACCTCAATCAGAATTCAGTTACCACTTGGCACATGCTGAAGACGTACTAAACAGGGTGGTAAAAAAACACCTGTACacctgtagaaaaaaaataatctcagGTCGAAggaaattcaaaaacaaaaccaaaaacaacctCACCCGTGGTTCTGAAAGAATGGAGAGCCCTCTCGACGAATCTTTGTATTTCCCTGCGCTTTATGCCACAGTCACAGCACTGTACATAGGGGCAGTGATACTCCGAGTAAAAGGGGGACTGAAGTTTGGGTCTTGGTATTTTATTGTGACTTTGGTGCTGACTGTTCTGGGTGGGCCCCTGTGCTTTCTGAGTTTGCCGGGCTACACTGGACTACTCCTGCTCACCTTCAGCTTTTTCGTCTGCTCTTTGCTACTTGGAAAACCAGTAGAACTGCTGCCAGTGAACAACAGAGCCGTGCTGATTACCGGCTGTGATTCAGGGTTCGGTCACGCCTTGGTCCAGCACTTGGACAGCCTGGGTTTCACTGTGTTTGCCGGAGTGCTGAACGAGAGAGGCGTCGGTGCGGACAAGCTGAGGAGATGCGGCTCAGAGAGGCTCTCGGTACTTCAGCTGGATGTAACCGACAGTGCTCAGATCCAGACGGCTTACCTGCGAGTGAATGCTGATGTTGGGGAAACGGGGCTTTGGGGGATAGTAAATAATGCAGGATTCCTGGGATGTGTAGCAGATGGAGAGATCCTGCCCATGAAGCTGTACAGGAAGTGCATGGCAGTCAACTTCCTTGGGGCAGTGGAGCTGACACAAACATTCCTGCCTCTCATTCGCAGAGCCAGAGGCAGGATGGTCAATATTTCTAGTTTTGCAGGAGAAGTCCCCATCCCTGGGTTTGCAGCCTATGGGGCTTCCAAAGCAGCCCTCAGCATGTTTTCCGAAGCCATGAGGCAGGAGCTGTCCAGATGGGGCATCAAAGTAGCTATCGTCCAGCCATCGGGTTTCAAAACAAATATCCGTGGCCAGAAAAAAGAATGGGAGAGCTGTAAGGAAGAGATCTTATCTCAGCTTCCACAAGATGTGAAGGAGGACTATGGCGAGGGATACATCTCCTCCATCCTCGgccatttcttccaaattatGTCCGTCTCCCAGGAGGACCTGCGGCCAGTGATGGACGACATTTATCAAGCCCTGATGGCTGCCAGCCCACAGACCCTCTATACGCCTGGCCAGTTGGCCTGGATCATCCCATTTATGCACCGCTTCTTCCCCGTACGTTTCAGTGACTTTGTGATTGCCACCCTATTTGGCTTCTACAAGCATGTCCCAGCGAGGCTGCAGGGGACTTCCAGTCCAGTCAACAAGCGTACAGGATAACATGTGCAGCTAGGTATTGTATTTCTGCCCTTAAGGTTTCTTAAAACTGTCACACTACGACCTGAGGCTTCTTAACTAACCAGTCTCACTCCACATTCCCCAATGCAGTGTATTCTGGAAGCATTTTTAGAGTGTATGCATCTCCCATAACATCTCATAGGGCTGTATTTGGTTCCATACACTATATGGAGAATATCATATTGATTTATGTGCGGCAGATATCTTGTGGCAGCCGAGTTTGTTCCCTTTTATGGTGAGTTTGCACTTATTCCACAGTAGGTGGACAATTTTTACGGTTCCATCTGCATTTCTGTCTTCCAGACTCGAACCTACTACTCTTGATGCCTTATCTCTGTTAGAGTTTTTAACATACACCTACACAAGTGCCGTTCTGTCTTTGCCACAGcgttgctttattgtttttatctgcGTGAAGGCAGCAGGATGTGAAATGAAGTGACAGATGCTTTATCTACCCGAGAAGAAACCATGACCCTATGCTTGTGTAACAGTGATCTAGGCTTCATCTCCTGCAGgtagattattattgttattattatgttattttttaatcatgccaagtttccctttttttcttattttgaagcATGTATGAATCATTAGAGTTACACAGACCTTTCCAGCTGTCTCCTATCTGCAAGTAATGTATGTTTGTGCAATATTGTCTTccttttttctaaaataaataaatgtttgtatcAAATCATTTGAATGTAATTCTATTCAGCTTTACTGTATTTGACTGTGACACTTGACTGGGTTGACCTTGATTATAAAGAGGATTAAATGGCTTTTACTGTCCACTGTAGAGATAGGACAGAAGATTTAATTGAGGACTACTTCAAGTATGAGCCCTTTTCTCTTAACTAAGACAGTATTTCGGTGGGGTTCTACTCCTCAATTAGCTTTGCCACCTGTTGCTACCCCGGCACTACAGCCCAGAGCATCTAATTTGTGTCAATGTAATGACAAAAGCCATGCCTTGACTCACTTCAGAGATCCTGTGAGATTGTGAGACTGCAGACAACACAGCCACTGTGTGCTATAGTACTGGAGAATAGAAACATAGAAGTTGTCTATGAGCAGTACAATAAAAAGCAGATGTTTCCAGTAACCCTGACACATAATAAAAATACGACTTTACAACTGTTTGTTGATCAGACTATCCTTCATGCATGCATCCTTGATGCATCTAATTCACTGATAGTTTGAGTGTAATTATCATATGATTAAATTACCCAGCCATACATAAAATAGGCCCAGAATTATCTGCTTGTTACAAAgatgtaaaaaactaaacaaattagcCTTTTGTTCTTGACTGATTACAGGACACAAAGCAACATTCAAGGTCAGGGAAGAACAATTGCTCAAGCATGGCAGAAATGTATTGTTACTAAGTTAAGAAGTCATGATGGGATAATAATAACCAATGTGCAAGCTCTATTAATTTGGGGAGTCCCAAAG
>TU81047
CCTACGTTTTACGCTTTCATTTGCACAACAGAGATGGCGGGGAAACTCAAAGCTGAAGAAATGAAAGATATAATACAGCGGTTAAATACTATCAACCATTCCTTAGAGTCCGCTGTGGCATCACTGGCGCAGAGCAAGAAGGAGCTGGGAAAGGCAGCCGAGAGCCAGACATACCTCAATCAGAGTCTGCAGCCTCTTTACACAGCGTTTGTGCCACAAGAAGATGTTGCTTCACTGTCTGGGGATAGTCCTGTGTGAATCTGCACCTTTGTGTCTTCACTTTGTATGTGTATCTCACTGAATTCACAGGGGATATTGATGTGCTTGTTCATCTGTGTTGATGTTGcgagtttaaataaatgtactgctCTCTACTCATGCCATGACACAAGCATCAGTGATACTGCAGTGTTCATGGAGagaagtgtaaatatatataaatatatatatatatagccaataTCATAGATTATGCATTTCTGTTGCAAATGGTATCCTTTAATGAAATCTTGTGTGGGGTTAAGTAATGTATTTACATGAGGCactaaagaaaatatacatagttATACAGTACTTACTGACTAGGCTGTTGAGTTGTCAGTCACACAAGAATGTCATCTatgtttctaaattaaattgccTTGTTTGTACTTGCAATAGATGCAGTAGCTAtctgtttttaagtgttattgGAGCCACTGTTAAAAAGAAttgcatggggggggggggggggaaatcccTGCAACTAAAATGTATACCTCCCCCTGAAAAGGAAAGCAGATTTGTaactttgaatttgtatttgaatattgTGAGGTGTATTGACTTTGGCATTAAACATCTCCTATAC
>TU81049
tatatatatatatatatatatatatatatatatatatatttatccaataTCATAGATTATGCATTTCTGTTGCAAATGGTATCCTTTAATGAAATCTTGTGTGGGGTTAAGTAATGTATTTACATGAGGCactaaagaaaatatacatagttATACAGTACTTACTGACTAGGCTGTTGAGTTGTCAGTCACACAAGAATGTCATCTatgtttctaaattaaattgccTTGTTTGTACTTGCAATAGATGCAGTAGCTAtctgtttttaagtgttattgGAGCCACTGTTAAAAAGAAttgcatggggggggggggggggaaatcccTGCAACTAAAATGTATACCTCCCCCTGAAAAGGAAAGCAGATTTGTaactttgaatttgtatttgaatattgTGAGGTGTATTGACTTTGGCATTAAACATCTCCTATAC
>TU81054
CCTACGTTTTACGCTTTCATTTGCACAACAGAGATGGCGGGGAAACTCAAAGCTGAAGAAATGAAAGATATAATACAGCGGTTAAATACTATCAACCATTCCTTAGAGTCCGCTGTGGCATCACTGGCGCAGAGCAAGAAGGAGCTGGGAAAGGCAGCCGAGAGCCAGACATACCTCAATCAGAGTCTGCAGCCTCTTTACACAGCGTTTGTGCCACAAGAAGATGTTGCTTCACTGTCTGGGGATAGTCCTGTGTGAATCTGCACCTTTGTGTCTTCACTTTGTATGTGTATCTCACTGAATTCACAGGGGATATTGATGTGCTTGTTCATCTGTGTTGATGTTGcgagtttaaataaatgtactgctCTCTACTCATGCCATGACACAAGCATCAGTGATACTGCAGTGTTCATGGAGagaagtgtaaatatatataaatatatatatatatatatatatatatatatatatatatagt

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020657 True 5812 mRNA 0.44 9 28178721 28191734
TU81047 False 850 lncRNA 0.39 3 28185609 28187431
TU81049 False 437 lncRNA 0.32 2 28185609 28239074
TU81054 False 481 lncRNA 0.40 4 28161602 28187431

Neighbor

gene id symbol gene type direction distance location
AMCG00020658 NA coding downstream 13755 28137230 ~ 28147847 (-)
AMCG00020653 NA coding downstream 126193 27863475 ~ 28035409 (-)
AMCG00020652 NA coding downstream 303984 27795256 ~ 27857618 (-)
AMCG00020651 NA coding downstream 375577 27752194 ~ 27786025 (-)
AMCG00020650 NA coding downstream 449898 27599214 ~ 27711704 (-)
AMCG00020659 gpib,LOC108428767,LOC100196524,LOC103130839 coding upstream 11799 28250873 ~ 28265191 (-)
AMCG00020662 NA coding upstream 89911 28328985 ~ 28342177 (-)
AMCG00020664 kctd15,LOC107668486 coding upstream 192705 28431779 ~ 28450361 (-)
AMCG00020666 NA coding upstream 242408 28481482 ~ 28487871 (-)
AMCG00020669 cebpg coding upstream 565127 28804201 ~ 28804674 (-)
G64745 NA non-coding downstream 740956 27420366 ~ 27420646 (-)
G64708 NA non-coding downstream 925280 27236083 ~ 27236322 (-)
G64632 NA non-coding downstream 1415779 26745549 ~ 26745823 (-)
G64630 NA non-coding downstream 1429314 26731435 ~ 26732288 (-)
G64629 NA non-coding downstream 1431491 26729855 ~ 26730111 (-)
G64847 NA non-coding upstream 77695 28316769 ~ 28323164 (-)
G64886 NA non-coding upstream 618915 28857989 ~ 28858354 (-)
G64912 NA non-coding upstream 757318 28996392 ~ 29001633 (-)
G64991 LOC103376870 non-coding upstream 1020483 29259557 ~ 29314059 (-)
G65023 NA non-coding upstream 1646527 29885601 ~ 29885899 (-)
AMCG00020639 LOC107583916 other downstream 911926 27246014 ~ 27249676 (-)
AMCG00020613 NA other downstream 2213259 25934901 ~ 25948343 (-)
G64470 NA other downstream 2242972 25898428 ~ 25918630 (-)
AMCG00020614 NA other downstream 2256004 25886050 ~ 25905598 (-)
AMCG00020604 NA other downstream 2446145 25687275 ~ 25715457 (-)
AMCG00020661 ss18l2 other upstream 85963 28325037 ~ 28328312 (-)
G64882 NA other upstream 549506 28788580 ~ 28796956 (-)
G65000 NA other upstream 1142241 29381315 ~ 29405636 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other upstream 1281117 29520191 ~ 29533117 (-)
AMCG00020694 wwox other upstream 2210671 30449745 ~ 30531136 (-)

Expression


Co-expression Network